Wall clock time and date at job start Tue Mar 31 2020 11:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47567 * 2 1 4 4 C 1.33635 * 126.04303 * 85.46137 * 3 2 1 5 5 N 1.31782 * 114.50267 * 179.97438 * 4 3 2 6 6 C 1.29021 * 117.12759 * 0.02562 * 5 4 3 7 7 C 1.50693 * 124.91954 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47577 * 95.28638 * 7 6 5 9 9 C 1.46892 * 111.00322 * 160.78449 * 8 7 6 10 10 C 1.50700 * 109.47411 * 288.52630 * 9 8 7 11 11 H 1.07996 * 119.99685 * 3.26174 * 10 9 8 12 12 C 1.37876 * 120.00096 * 183.25711 * 10 9 8 13 13 N 1.31519 * 120.00019 * 5.27057 * 12 10 9 14 14 Si 1.86801 * 119.99812 * 185.26764 * 12 10 9 15 15 H 1.48496 * 109.47039 * 65.00351 * 14 12 10 16 16 H 1.48508 * 109.46972 * 184.99930 * 14 12 10 17 17 H 1.48494 * 109.47084 * 304.99920 * 14 12 10 18 18 C 1.46905 * 110.99709 * 284.74224 * 8 7 6 19 19 C 1.50701 * 109.47029 * 169.99665 * 18 8 7 20 20 C 1.38223 * 119.61596 * 94.97552 * 19 18 8 21 21 C 1.38628 * 119.15976 * 179.78951 * 20 19 18 22 22 C 1.38672 * 118.41929 * 0.47107 * 21 20 19 23 23 C 1.38182 * 119.16202 * 359.51312 * 22 21 20 24 24 N 1.31855 * 119.61641 * 274.99565 * 19 18 8 25 25 S 1.70978 * 110.16349 * 0.22909 * 6 5 4 26 26 H 1.09007 * 109.46543 * 300.00711 * 1 2 3 27 27 H 1.09000 * 109.46917 * 59.99819 * 1 2 3 28 28 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46830 * 239.99548 * 2 1 3 30 30 H 1.09008 * 109.46761 * 119.99865 * 2 1 3 31 31 H 1.07999 * 122.74852 * 0.02916 * 4 3 2 32 32 H 1.09005 * 109.47113 * 335.27932 * 7 6 5 33 33 H 1.09010 * 109.47138 * 215.28731 * 7 6 5 34 34 H 1.09005 * 109.47486 * 48.53001 * 9 8 7 35 35 H 1.09008 * 109.47076 * 168.52903 * 9 8 7 36 36 H 0.96998 * 119.99795 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47264 * 49.99731 * 18 8 7 38 38 H 1.08999 * 109.46854 * 289.99531 * 18 8 7 39 39 H 1.07998 * 120.42593 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.79017 * 180.23748 * 21 20 19 41 41 H 1.08003 * 120.42269 * 179.77893 * 22 21 20 42 42 H 1.08003 * 119.61779 * 180.25105 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2140 2.1905 1.0772 5 7 2.6646 3.4007 0.8144 6 6 2.8729 3.6948 -0.4245 7 6 3.3842 5.0222 -0.9218 8 7 4.8413 4.9523 -1.0944 9 6 5.3183 6.0213 -1.9818 10 6 4.8931 5.7265 -3.3972 11 1 4.2808 4.8623 -3.6081 12 6 5.2858 6.5601 -4.4228 13 7 6.1153 7.5521 -4.1829 14 14 4.6398 6.2803 -6.1530 15 1 3.1722 6.5055 -6.1758 16 1 5.3004 7.2271 -7.0872 17 1 4.9333 4.8862 -6.5716 18 6 5.5280 4.9997 0.2034 19 6 6.9883 4.6810 0.0110 20 6 7.8981 5.7107 -0.1391 21 6 9.2397 5.4069 -0.3111 22 6 9.6164 4.0726 -0.3358 23 6 8.6502 3.0972 -0.1789 24 7 7.3832 3.4232 -0.0127 25 16 2.4780 2.3626 -1.4209 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0090 1.8486 2.0809 32 1 3.1409 5.7997 -0.1975 33 1 2.9159 5.2569 -1.8778 34 1 4.8923 6.9734 -1.6653 35 1 6.4059 6.0758 -1.9330 36 1 6.3918 8.1383 -4.9045 37 1 5.0822 4.2681 0.8773 38 1 5.4271 5.9970 0.6316 39 1 7.5687 6.7390 -0.1187 40 1 9.9736 6.1908 -0.4270 41 1 10.6524 3.7992 -0.4715 42 1 8.9359 2.0558 -0.1928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346140739.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:48 Heat of formation + Delta-G solvation = 60.637305 kcal Electronic energy + Delta-G solvation = -23711.799995 eV Core-core repulsion = 20396.722233 eV Total energy + Delta-G solvation = -3315.077762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16838 -40.61074 -38.32877 -35.25204 -34.69415 -33.36863 -32.83582 -30.88241 -29.26359 -28.22478 -26.33023 -24.97121 -24.36069 -23.66968 -23.27189 -21.83254 -20.07948 -18.99370 -18.50128 -17.68438 -17.27338 -16.71413 -16.66836 -16.36567 -16.04873 -15.71408 -15.28755 -14.98967 -14.91345 -14.59425 -14.39677 -14.07607 -13.95220 -13.79494 -13.47280 -13.23929 -13.07094 -12.89081 -12.61743 -12.52671 -12.47025 -12.41530 -12.31191 -11.91251 -11.64762 -11.37506 -10.74156 -10.57578 -10.51452 -10.29172 -10.10650 -9.87493 -9.62934 -9.12503 -8.18353 -6.25751 -0.19735 0.23438 0.45199 0.49927 0.96242 1.41561 1.43196 1.50926 1.91262 2.40983 2.81934 3.13430 3.20616 3.41686 3.58938 3.89022 3.94319 4.05083 4.09768 4.19184 4.20778 4.29912 4.37827 4.44672 4.53539 4.54626 4.64465 4.66821 4.80802 4.84473 4.90720 5.05918 5.12366 5.16956 5.22391 5.27618 5.32418 5.33694 5.41335 5.65753 5.85733 6.03545 6.22896 6.49811 6.85261 6.86704 7.17088 7.41856 8.91999 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.005163 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.915008 B = 5422.310044 C = 7616.993740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.219 4.219 4 C 0.017 3.983 5 N -0.493 5.493 6 C 0.050 3.950 7 C 0.138 3.862 8 N -0.525 5.525 9 C 0.205 3.795 10 C -0.522 4.522 11 H 0.058 0.942 12 C 0.012 3.988 13 N -0.926 5.926 14 Si 0.956 3.044 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.108 3.892 19 C 0.128 3.872 20 C -0.172 4.172 21 C -0.080 4.080 22 C -0.171 4.171 23 C 0.082 3.918 24 N -0.499 5.499 25 S 0.136 5.864 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.194 0.806 32 H 0.056 0.944 33 H 0.093 0.907 34 H -0.031 1.031 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -12.236 9.454 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.341 4.341 4 C -0.133 4.133 5 N -0.209 5.209 6 C -0.227 4.227 7 C 0.007 3.993 8 N -0.250 5.250 9 C 0.079 3.921 10 C -0.560 4.560 11 H 0.076 0.924 12 C -0.187 4.187 13 N -0.566 5.566 14 Si 0.781 3.219 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.020 4.020 19 C -0.009 4.009 20 C -0.193 4.193 21 C -0.106 4.106 22 C -0.191 4.191 23 C -0.075 4.075 24 N -0.209 5.209 25 S 0.391 5.609 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.210 0.790 32 H 0.074 0.926 33 H 0.111 0.889 34 H -0.013 1.013 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.143 0.857 40 H 0.175 0.825 41 H 0.188 0.812 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.864 -12.912 8.566 15.758 hybrid contribution 0.184 1.706 0.125 1.720 sum -2.680 -11.207 8.691 14.433 Atomic orbital electron populations 1.21776 0.93267 1.03054 1.02007 1.20113 0.96759 0.86987 1.04395 1.26436 1.09507 1.03596 0.94512 1.21954 1.02116 0.88121 1.01156 1.66282 1.15690 1.20166 1.18734 1.26712 1.03018 1.01423 0.91587 1.20422 0.89024 0.89241 1.00625 1.61907 1.02607 1.49533 1.10987 1.19553 0.95669 0.85995 0.90848 1.21338 1.32101 1.10183 0.92413 0.92400 1.25723 0.95032 0.95041 1.02897 1.70054 1.33806 1.18674 1.34076 0.85629 0.78970 0.78005 0.79256 1.19187 1.20801 1.19731 1.20872 0.89547 0.99712 0.91882 1.21008 0.95775 0.88941 0.95220 1.22092 0.95126 1.00332 1.01723 1.21900 0.95483 0.98229 0.94995 1.22469 1.02558 0.93030 1.01002 1.23268 0.87632 1.01581 0.95066 1.67406 1.19842 1.20745 1.12921 1.84076 1.58116 1.06548 1.12194 0.92284 0.93504 0.89976 0.90315 0.88002 0.78964 0.92568 0.88872 1.01316 0.95416 0.92749 0.90005 0.93886 0.85671 0.82463 0.81241 0.80373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.90 71.98 0.71 -1.41 16 2 C -0.04 -0.75 6.47 29.85 0.19 -0.56 16 3 C -0.22 -5.69 5.85 24.64 0.14 -5.54 16 4 C 0.02 0.48 11.25 83.66 0.94 1.42 16 5 N -0.49 -17.24 10.02 -191.46 -1.92 -19.16 16 6 C 0.05 1.84 6.27 88.52 0.55 2.39 16 7 C 0.14 5.63 5.40 85.56 0.46 6.10 16 8 N -0.53 -23.71 4.37 -909.93 -3.97 -27.69 16 9 C 0.20 10.72 4.58 85.56 0.39 11.11 16 10 C -0.52 -29.19 8.38 25.60 0.21 -28.97 16 11 H 0.06 3.22 7.56 -2.91 -0.02 3.19 16 12 C 0.01 0.67 5.45 84.65 0.46 1.13 16 13 N -0.93 -54.20 13.30 21.45 0.29 -53.91 16 14 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 C 0.11 4.44 5.11 85.56 0.44 4.88 16 19 C 0.13 5.14 5.69 42.55 0.24 5.38 16 20 C -0.17 -6.34 8.03 22.36 0.18 -6.16 16 21 C -0.08 -2.40 10.18 22.47 0.23 -2.17 16 22 C -0.17 -4.52 10.11 22.36 0.23 -4.29 16 23 C 0.08 2.49 11.18 84.67 0.95 3.44 16 24 N -0.50 -19.40 10.27 -183.89 -1.89 -21.29 16 25 S 0.14 4.40 23.18 -56.49 -1.31 3.09 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.06 2.23 8.01 -2.38 -0.02 2.21 16 33 H 0.09 3.99 6.95 -2.38 -0.02 3.98 16 34 H -0.03 -1.71 8.06 -2.38 -0.02 -1.73 16 35 H 0.03 1.55 5.57 -2.38 -0.01 1.54 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.08 3.37 7.00 -2.39 -0.02 3.36 16 38 H 0.04 1.70 8.02 -2.39 -0.02 1.68 16 39 H 0.13 4.61 8.01 -2.91 -0.02 4.59 16 40 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -68.73 366.27 0.57 -68.17 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.01 Total: 18.17 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 6.34 Total: -13.26 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -7.50 Total: -122.05 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.31 Total: 3.09 kcal Total: -68.73 0.57 -68.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346140739.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.803 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds