Wall clock time and date at job start Tue Mar 31 2020 11:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47072 * 2 1 4 4 C 1.33639 * 126.03986 * 89.99724 * 3 2 1 5 5 N 1.31785 * 114.50388 * 179.97438 * 4 3 2 6 6 C 1.29024 * 117.12134 * 0.02562 * 5 4 3 7 7 C 1.50699 * 124.91290 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47062 * 90.02783 * 7 6 5 9 9 C 1.46901 * 111.00407 * 66.04151 * 8 7 6 10 10 C 1.50702 * 109.46516 * 62.95490 * 9 8 7 11 11 H 1.07998 * 120.00756 * 4.96158 * 10 9 8 12 12 C 1.37886 * 119.99493 * 184.96769 * 10 9 8 13 13 N 1.31511 * 120.00224 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99572 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47576 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47054 * 119.99672 * 14 12 10 17 17 H 1.48507 * 109.46964 * 239.99542 * 14 12 10 18 18 C 1.46901 * 111.00168 * 190.00020 * 8 7 6 19 19 C 1.50697 * 109.47238 * 163.94894 * 18 8 7 20 20 C 1.38675 * 120.41679 * 275.60360 * 19 18 8 21 21 C 1.38630 * 118.41863 * 179.78312 * 20 19 18 22 22 C 1.38235 * 119.15792 * 0.51875 * 21 20 19 23 23 N 1.31846 * 120.76335 * 359.71973 * 22 21 20 24 24 C 1.31883 * 121.72820 * 0.02562 * 23 22 21 25 25 S 1.70976 * 110.16727 * 0.22789 * 6 5 4 26 26 H 1.08999 * 109.47113 * 299.99927 * 1 2 3 27 27 H 1.09000 * 109.47543 * 60.00065 * 1 2 3 28 28 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47113 * 240.00073 * 2 1 3 30 30 H 1.09000 * 109.46840 * 119.99680 * 2 1 3 31 31 H 1.08001 * 122.74765 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47363 * 330.02770 * 7 6 5 33 33 H 1.08998 * 109.46985 * 210.02646 * 7 6 5 34 34 H 1.08991 * 109.47198 * 182.94981 * 9 8 7 35 35 H 1.09000 * 109.46753 * 302.95987 * 9 8 7 36 36 H 0.97000 * 120.00212 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.47064 * 283.95284 * 18 8 7 38 38 H 1.09007 * 109.47150 * 43.94741 * 18 8 7 39 39 H 1.07999 * 120.79249 * 0.02562 * 20 19 18 40 40 H 1.07998 * 120.42135 * 180.22256 * 21 20 19 41 41 H 1.07996 * 119.61733 * 179.75083 * 22 21 20 42 42 H 1.08007 * 119.61863 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2943 2.1621 1.0806 5 7 2.7252 3.3793 0.8171 6 6 2.8408 3.7061 -0.4257 7 6 3.3148 5.0469 -0.9245 8 7 4.7745 5.0206 -1.0872 9 6 5.1688 4.0913 -2.1544 10 6 4.6050 4.5674 -3.4685 11 1 4.0816 5.5106 -3.5216 12 6 4.7574 3.7987 -4.6029 13 7 5.3951 2.6503 -4.5384 14 14 4.0593 4.3891 -6.2319 15 1 3.3930 5.7021 -6.0382 16 1 5.1594 4.5327 -7.2189 17 1 3.0699 3.4017 -6.7334 18 6 5.3002 6.3685 -1.3420 19 6 6.7898 6.3782 -1.1139 20 6 7.3035 6.5541 0.1621 21 6 8.6802 6.5515 0.3253 22 6 9.4894 6.3857 -0.7831 23 7 8.9658 6.2259 -1.9826 24 6 7.6610 6.2180 -2.1743 25 16 2.3716 2.4003 -1.4247 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1644 1.7936 2.0875 32 1 3.0433 5.8191 -0.2047 33 1 2.8461 5.2639 -1.8843 34 1 6.2561 4.0519 -2.2186 35 1 4.7814 3.0971 -1.9318 36 1 5.5020 2.1093 -5.3364 37 1 5.0887 6.6521 -2.3730 38 1 4.8243 7.0781 -0.6651 39 1 6.6467 6.6861 1.0092 40 1 9.1150 6.6822 1.3052 41 1 10.5629 6.3866 -0.6651 42 1 7.2689 6.0849 -3.1719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346187842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:53 Heat of formation + Delta-G solvation = 77.704367 kcal Electronic energy + Delta-G solvation = -23919.459135 eV Core-core repulsion = 20605.121456 eV Total energy + Delta-G solvation = -3314.337678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.75011 -39.19464 -36.94177 -34.13144 -32.76694 -32.13119 -31.26977 -29.28243 -27.29597 -26.71758 -24.68952 -23.68853 -23.04202 -22.54058 -21.82990 -20.14952 -18.51853 -17.59249 -16.72991 -16.41222 -15.86368 -15.22297 -15.13440 -14.74446 -14.61969 -14.24856 -13.92701 -13.63478 -13.42917 -13.31259 -12.98537 -12.59719 -12.50335 -12.37813 -12.25512 -11.75413 -11.41547 -11.35313 -11.18237 -11.04802 -10.92255 -10.86699 -10.56289 -10.32586 -10.11346 -9.76581 -9.34068 -9.03837 -8.95293 -8.65333 -8.52240 -8.44563 -8.21205 -7.34226 -6.10607 -4.21503 1.21224 1.58395 1.75395 1.94344 2.41768 3.21079 3.30930 3.31586 3.31935 4.24295 4.32938 4.67367 4.89884 4.99731 5.11020 5.11596 5.19854 5.20545 5.33342 5.40225 5.43898 5.56910 5.61139 5.69993 5.79109 5.85412 5.86863 5.94400 6.05164 6.14111 6.16738 6.27513 6.28822 6.43186 6.51866 6.68034 6.82621 7.05755 7.21428 7.44085 7.80100 7.85230 8.04415 8.15812 8.29688 8.45367 8.87597 9.46113 10.93982 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.005067 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.176135 B = 5524.595229 C = 7410.957484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.256 4.256 4 C 0.029 3.971 5 N -0.476 5.476 6 C 0.068 3.932 7 C 0.134 3.866 8 N -0.530 5.530 9 C 0.176 3.824 10 C -0.558 4.558 11 H 0.059 0.941 12 C 0.075 3.925 13 N -0.878 5.878 14 Si 0.880 3.120 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.099 3.901 19 C -0.107 4.107 20 C -0.062 4.062 21 C -0.185 4.185 22 C 0.083 3.917 23 N -0.490 5.490 24 C 0.121 3.879 25 S 0.185 5.815 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 1.376 9.092 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.378 4.378 4 C -0.124 4.124 5 N -0.191 5.191 6 C -0.209 4.209 7 C 0.003 3.997 8 N -0.254 5.254 9 C 0.050 3.950 10 C -0.597 4.597 11 H 0.077 0.923 12 C -0.129 4.129 13 N -0.515 5.515 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.029 4.029 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.205 4.205 22 C -0.074 4.074 23 N -0.199 5.199 24 C -0.037 4.037 25 S 0.442 5.558 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.179 0.821 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.466 1.217 8.006 8.808 hybrid contribution -1.181 0.113 -0.061 1.188 sum -4.647 1.330 7.945 9.300 Atomic orbital electron populations 1.21789 0.94762 1.01556 1.02286 1.19881 0.95644 0.89619 1.02999 1.26136 1.11844 1.02736 0.97098 1.21493 1.02265 0.89253 0.99401 1.66264 1.16305 1.17432 1.19110 1.26816 1.01707 1.01384 0.90990 1.20460 0.90454 0.89137 0.99604 1.62507 1.07609 1.07692 1.47598 1.19986 0.97052 0.91853 0.86094 1.21634 1.37675 1.06035 0.94318 0.92334 1.24876 0.94745 0.94653 0.98660 1.69946 1.40593 1.11828 1.29174 0.86732 0.79091 0.78950 0.84486 1.19748 1.20822 1.20877 1.20849 0.89626 0.91295 1.01160 1.20803 0.97241 0.99131 0.93802 1.21430 0.94879 0.95555 0.96995 1.22017 0.94590 1.03849 1.00005 1.22630 0.99983 0.96511 0.88270 1.67709 1.14682 1.12446 1.25018 1.22926 0.87876 0.92867 0.99990 1.84707 1.56846 1.05569 1.08665 0.92536 0.92529 0.92329 0.90823 0.90425 0.82092 0.89987 0.91507 0.94864 0.94174 0.92729 0.91732 0.91601 0.85318 0.85625 0.83678 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 37.16 0.37 -1.15 16 2 C -0.04 -0.51 6.47 -27.89 -0.18 -0.69 16 3 C -0.26 -4.04 5.85 -35.92 -0.21 -4.25 16 4 C 0.03 0.47 11.25 -19.18 -0.22 0.25 16 5 N -0.48 -8.94 10.54 -11.86 -0.13 -9.07 16 6 C 0.07 1.31 6.17 -13.46 -0.08 1.23 16 7 C 0.13 2.50 5.36 -4.98 -0.03 2.47 16 8 N -0.53 -10.62 4.65 -238.97 -1.11 -11.73 16 9 C 0.18 4.18 4.68 -4.97 -0.02 4.15 16 10 C -0.56 -13.64 7.34 -34.44 -0.25 -13.89 16 11 H 0.06 1.40 5.95 -52.49 -0.31 1.09 16 12 C 0.08 1.93 5.46 -17.82 -0.10 1.84 16 13 N -0.88 -24.12 13.29 55.43 0.74 -23.38 16 14 Si 0.88 20.05 29.54 -169.99 -5.02 15.03 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.10 1.75 4.97 -4.98 -0.02 1.72 16 19 C -0.11 -1.89 4.91 -104.48 -0.51 -2.40 16 20 C -0.06 -0.96 9.88 -39.28 -0.39 -1.35 16 21 C -0.18 -2.61 10.11 -39.44 -0.40 -3.01 16 22 C 0.08 1.28 11.18 -17.55 -0.20 1.08 16 23 N -0.49 -9.12 10.36 -13.25 -0.14 -9.25 16 24 C 0.12 2.30 9.70 -17.55 -0.17 2.13 16 25 S 0.19 3.45 21.60 -107.50 -2.32 1.12 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.08 1.35 7.86 -51.93 -0.41 0.95 16 33 H 0.07 1.28 6.59 -51.93 -0.34 0.93 16 34 H 0.03 0.88 6.62 -51.93 -0.34 0.54 16 35 H 0.04 1.04 5.88 -51.93 -0.31 0.74 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.06 1.21 6.06 -51.93 -0.31 0.89 16 38 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.16 3.25 8.06 -52.48 -0.42 2.83 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -29.01 360.58 -10.75 -39.76 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.79 Total: 3.95 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.41 Total: -11.86 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.64 Total: -53.44 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.32 Total: 1.12 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.01 -10.75 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346187842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.468 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds