Wall clock time and date at job start Tue Mar 31 2020 11:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47072 * 2 1 4 4 C 1.33639 * 126.03986 * 89.99724 * 3 2 1 5 5 N 1.31785 * 114.50388 * 179.97438 * 4 3 2 6 6 C 1.29024 * 117.12134 * 0.02562 * 5 4 3 7 7 C 1.50699 * 124.91290 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47062 * 90.02783 * 7 6 5 9 9 C 1.46901 * 111.00407 * 66.04151 * 8 7 6 10 10 C 1.50702 * 109.46516 * 62.95490 * 9 8 7 11 11 H 1.07998 * 120.00756 * 4.96158 * 10 9 8 12 12 C 1.37886 * 119.99493 * 184.96769 * 10 9 8 13 13 N 1.31511 * 120.00224 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99572 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47576 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47054 * 119.99672 * 14 12 10 17 17 H 1.48507 * 109.46964 * 239.99542 * 14 12 10 18 18 C 1.46901 * 111.00168 * 190.00020 * 8 7 6 19 19 C 1.50697 * 109.47238 * 163.94894 * 18 8 7 20 20 C 1.38675 * 120.41679 * 275.60360 * 19 18 8 21 21 C 1.38630 * 118.41863 * 179.78312 * 20 19 18 22 22 C 1.38235 * 119.15792 * 0.51875 * 21 20 19 23 23 N 1.31846 * 120.76335 * 359.71973 * 22 21 20 24 24 C 1.31883 * 121.72820 * 0.02562 * 23 22 21 25 25 S 1.70976 * 110.16727 * 0.22789 * 6 5 4 26 26 H 1.08999 * 109.47113 * 299.99927 * 1 2 3 27 27 H 1.09000 * 109.47543 * 60.00065 * 1 2 3 28 28 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47113 * 240.00073 * 2 1 3 30 30 H 1.09000 * 109.46840 * 119.99680 * 2 1 3 31 31 H 1.08001 * 122.74765 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47363 * 330.02770 * 7 6 5 33 33 H 1.08998 * 109.46985 * 210.02646 * 7 6 5 34 34 H 1.08991 * 109.47198 * 182.94981 * 9 8 7 35 35 H 1.09000 * 109.46753 * 302.95987 * 9 8 7 36 36 H 0.97000 * 120.00212 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.47064 * 283.95284 * 18 8 7 38 38 H 1.09007 * 109.47150 * 43.94741 * 18 8 7 39 39 H 1.07999 * 120.79249 * 0.02562 * 20 19 18 40 40 H 1.07998 * 120.42135 * 180.22256 * 21 20 19 41 41 H 1.07996 * 119.61733 * 179.75083 * 22 21 20 42 42 H 1.08007 * 119.61863 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2943 2.1621 1.0806 5 7 2.7252 3.3793 0.8171 6 6 2.8408 3.7061 -0.4257 7 6 3.3148 5.0469 -0.9245 8 7 4.7745 5.0206 -1.0872 9 6 5.1688 4.0913 -2.1544 10 6 4.6050 4.5674 -3.4685 11 1 4.0816 5.5106 -3.5216 12 6 4.7574 3.7987 -4.6029 13 7 5.3951 2.6503 -4.5384 14 14 4.0593 4.3891 -6.2319 15 1 3.3930 5.7021 -6.0382 16 1 5.1594 4.5327 -7.2189 17 1 3.0699 3.4017 -6.7334 18 6 5.3002 6.3685 -1.3420 19 6 6.7898 6.3782 -1.1139 20 6 7.3035 6.5541 0.1621 21 6 8.6802 6.5515 0.3253 22 6 9.4894 6.3857 -0.7831 23 7 8.9658 6.2259 -1.9826 24 6 7.6610 6.2180 -2.1743 25 16 2.3716 2.4003 -1.4247 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1644 1.7936 2.0875 32 1 3.0433 5.8191 -0.2047 33 1 2.8461 5.2639 -1.8843 34 1 6.2561 4.0519 -2.2186 35 1 4.7814 3.0971 -1.9318 36 1 5.5020 2.1093 -5.3364 37 1 5.0887 6.6521 -2.3730 38 1 4.8243 7.0781 -0.6651 39 1 6.6467 6.6861 1.0092 40 1 9.1150 6.6822 1.3052 41 1 10.5629 6.3866 -0.6651 42 1 7.2689 6.0849 -3.1719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346187842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:52 Heat of formation + Delta-G solvation = 60.225263 kcal Electronic energy + Delta-G solvation = -23920.217085 eV Core-core repulsion = 20605.121456 eV Total energy + Delta-G solvation = -3315.095629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06919 -40.54425 -38.50051 -35.23126 -34.62227 -33.54515 -32.53150 -30.66013 -29.04605 -28.00584 -26.24890 -25.20879 -24.33206 -23.76526 -23.14002 -21.68368 -19.89394 -19.03895 -18.40818 -17.79779 -17.25221 -16.73508 -16.69250 -16.26836 -15.85521 -15.68497 -15.17113 -14.89560 -14.75489 -14.68257 -14.32115 -14.18286 -13.87993 -13.78007 -13.41943 -13.11833 -12.87077 -12.83739 -12.55586 -12.54296 -12.42899 -12.29036 -12.16509 -11.92278 -11.68109 -11.56425 -10.62483 -10.57417 -10.43108 -10.26451 -9.95503 -9.85091 -9.58452 -9.02108 -8.08795 -6.25646 -0.14856 0.30808 0.49255 0.58030 1.05020 1.36810 1.41211 1.48734 1.96901 2.40400 2.92636 3.18941 3.33403 3.56692 3.68451 3.93796 4.02252 4.08477 4.16319 4.23074 4.26688 4.28722 4.42663 4.54159 4.62393 4.66980 4.68084 4.76199 4.85393 4.99733 5.00311 5.03020 5.16583 5.24218 5.30605 5.32939 5.42845 5.43408 5.52369 5.81364 5.92740 6.04008 6.23551 6.40666 6.90548 6.92201 7.15704 7.44801 8.94112 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.005067 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.176135 B = 5524.595229 C = 7410.957484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.233 4.233 4 C 0.015 3.985 5 N -0.484 5.484 6 C 0.054 3.946 7 C 0.137 3.863 8 N -0.531 5.531 9 C 0.197 3.803 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.935 3.065 15 H -0.263 1.263 16 H -0.286 1.286 17 H -0.281 1.281 18 C 0.102 3.898 19 C -0.120 4.120 20 C -0.064 4.064 21 C -0.170 4.170 22 C 0.076 3.924 23 N -0.520 5.520 24 C 0.095 3.905 25 S 0.126 5.874 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.107 0.893 33 H 0.056 0.944 34 H -0.002 1.002 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 1.738 11.637 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.355 4.355 4 C -0.136 4.136 5 N -0.199 5.199 6 C -0.224 4.224 7 C 0.006 3.994 8 N -0.255 5.255 9 C 0.071 3.929 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.172 4.172 13 N -0.554 5.554 14 Si 0.762 3.238 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.207 1.207 18 C -0.026 4.026 19 C -0.122 4.122 20 C -0.090 4.090 21 C -0.189 4.189 22 C -0.081 4.081 23 N -0.230 5.230 24 C -0.061 4.061 25 S 0.382 5.618 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.212 0.788 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.017 0.983 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.170 0.830 40 H 0.186 0.814 41 H 0.196 0.804 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.035 1.602 10.563 11.420 hybrid contribution -0.959 -0.023 -0.709 1.193 sum -4.994 1.579 9.854 11.160 Atomic orbital electron populations 1.21760 0.93087 1.03038 1.02007 1.20087 0.96988 0.87327 1.03988 1.26507 1.10181 1.03766 0.95013 1.21993 1.02136 0.88578 1.00921 1.66266 1.16262 1.18679 1.18741 1.26824 1.02909 1.01505 0.91114 1.20480 0.89139 0.89948 0.99787 1.62417 1.08826 1.08428 1.45784 1.19525 0.94544 0.91838 0.87015 1.21802 1.36299 1.05584 0.94643 0.92005 1.25541 0.95255 0.94799 1.01644 1.70065 1.42477 1.13138 1.29769 0.85851 0.78250 0.78838 0.80905 1.18684 1.21247 1.20738 1.20888 0.90212 0.90483 1.01005 1.20794 0.96798 1.00078 0.94569 1.21755 0.96130 0.94652 0.96462 1.22458 0.93839 1.01213 1.01418 1.23266 1.01849 0.95399 0.87607 1.67634 1.14450 1.13600 1.27282 1.22599 0.88808 0.95280 0.99459 1.84880 1.58016 1.07450 1.11470 0.91888 0.93755 0.89993 0.91240 0.87919 0.78832 0.87520 0.92551 0.98343 0.96430 0.92994 0.93500 0.88397 0.82964 0.81364 0.80419 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.89 71.98 0.71 -1.89 16 2 C -0.04 -0.99 6.47 29.85 0.19 -0.80 16 3 C -0.23 -7.09 5.85 24.64 0.14 -6.94 16 4 C 0.01 0.46 11.25 83.66 0.94 1.40 16 5 N -0.48 -17.62 10.54 -191.45 -2.02 -19.64 16 6 C 0.05 2.06 6.17 88.52 0.55 2.61 16 7 C 0.14 5.07 5.36 85.56 0.46 5.53 16 8 N -0.53 -21.45 4.65 -909.95 -4.23 -25.68 16 9 C 0.20 9.77 4.68 85.56 0.40 10.17 16 10 C -0.54 -27.58 7.34 25.60 0.19 -27.39 16 11 H 0.06 3.04 5.95 -2.91 -0.02 3.03 16 12 C 0.03 1.50 5.46 84.66 0.46 1.97 16 13 N -0.92 -52.41 13.29 21.45 0.28 -52.12 16 14 Si 0.94 42.27 29.54 68.60 2.03 44.29 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.10 3.59 4.97 85.56 0.43 4.02 16 19 C -0.12 -4.22 4.91 -19.78 -0.10 -4.32 16 20 C -0.06 -1.83 9.88 22.47 0.22 -1.60 16 21 C -0.17 -4.25 10.11 22.36 0.23 -4.03 16 22 C 0.08 2.20 11.18 84.69 0.95 3.15 16 23 N -0.52 -19.66 10.36 -195.84 -2.03 -21.69 16 24 C 0.09 3.79 9.70 84.67 0.82 4.61 16 25 S 0.13 4.79 21.60 -56.49 -1.22 3.57 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.19 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.11 3.36 7.86 -2.39 -0.02 3.34 16 33 H 0.06 2.19 6.59 -2.39 -0.02 2.17 16 34 H 0.00 -0.09 6.62 -2.39 -0.02 -0.10 16 35 H 0.02 0.96 5.88 -2.39 -0.01 0.94 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.05 1.81 6.06 -2.39 -0.01 1.79 16 38 H 0.10 2.78 7.79 -2.38 -0.02 2.76 16 39 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.13 5.80 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -65.60 360.58 0.43 -65.17 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.02 Total: 19.63 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 6.59 Total: -13.53 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -7.99 Total: -119.13 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.22 Total: 3.57 kcal Total: -65.60 0.43 -65.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346187842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.395 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds