Wall clock time and date at job start Tue Mar 31 2020 12:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 H 1.08999 * 109.47078 * 305.27717 * 3 2 1 5 5 N 1.46900 * 109.46967 * 65.27863 * 3 2 1 6 6 C 1.46897 * 111.00054 * 202.31442 * 5 3 2 7 7 C 1.52997 * 109.47048 * 174.78687 * 6 5 3 8 8 C 1.50701 * 109.46993 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00512 * 359.97438 * 8 7 6 10 10 C 1.37885 * 120.00145 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99608 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47011 * 59.99754 * 12 10 8 14 14 H 1.48497 * 109.46906 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46762 * 299.99805 * 12 10 8 16 16 C 1.50704 * 109.47164 * 185.27719 * 3 2 1 17 17 C 1.38263 * 119.94309 * 279.72727 * 16 3 2 18 18 C 1.38144 * 120.05225 * 179.72620 * 17 16 3 19 19 C 1.38737 * 119.94329 * 0.54840 * 18 17 16 20 20 O 1.35901 * 120.05385 * 179.74918 * 19 18 17 21 21 C 1.42904 * 117.00195 * 359.97438 * 20 19 18 22 22 F 1.39899 * 109.46893 * 59.99986 * 21 20 19 23 23 F 1.39893 * 109.47395 * 180.02562 * 21 20 19 24 24 F 1.39899 * 109.47175 * 300.00360 * 21 20 19 25 25 C 1.38725 * 119.89147 * 359.72700 * 19 18 17 26 26 C 1.38146 * 119.94162 * 359.97438 * 25 19 18 27 27 H 1.08997 * 109.46606 * 174.85992 * 1 2 3 28 28 H 1.08991 * 109.46726 * 294.85727 * 1 2 3 29 29 H 1.08999 * 109.46797 * 54.86207 * 1 2 3 30 30 H 1.09000 * 109.47368 * 240.00411 * 2 1 3 31 31 H 1.08997 * 109.47391 * 120.00405 * 2 1 3 32 32 H 1.00903 * 111.00004 * 78.35654 * 5 3 2 33 33 H 1.09001 * 109.47189 * 54.78691 * 6 5 3 34 34 H 1.09002 * 109.46793 * 294.78450 * 6 5 3 35 35 H 1.09002 * 109.47130 * 299.99557 * 7 6 5 36 36 H 1.09001 * 109.47122 * 59.99963 * 7 6 5 37 37 H 0.97003 * 120.00056 * 180.02562 * 11 10 8 38 38 H 1.08000 * 119.97513 * 0.02562 * 17 16 3 39 39 H 1.08005 * 120.02938 * 180.27287 * 18 17 16 40 40 H 1.07994 * 120.02901 * 179.97438 * 25 19 18 41 41 H 1.07994 * 119.97469 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6015 1.9829 -0.8389 5 7 1.6571 2.0972 1.2581 6 6 1.6394 3.5583 1.1070 7 6 1.1128 4.1976 2.3934 8 6 1.0941 5.6965 2.2383 9 1 1.4250 6.1480 1.3147 10 6 0.6553 6.4916 3.2758 11 7 0.2528 5.9419 4.4006 12 14 0.6327 8.3496 3.0837 13 1 -0.2517 8.7192 1.9497 14 1 0.1227 8.9701 4.3327 15 1 2.0100 8.8363 2.8164 16 6 3.5414 1.4446 -0.1307 17 6 4.3310 1.2070 0.9791 18 6 5.7074 1.2027 0.8608 19 6 6.2973 1.4484 -0.3707 20 8 7.6512 1.4498 -0.4886 21 6 8.4060 1.1913 0.6970 22 9 8.0733 -0.0730 1.1951 23 9 9.7720 1.2306 0.3980 24 9 8.1114 2.1637 1.6587 25 6 5.5029 1.6922 -1.4815 26 6 4.1269 1.6892 -1.3592 27 1 -0.3632 -1.0235 -0.0921 28 1 -0.3632 0.4320 0.9324 29 1 -0.3633 0.5915 -0.8404 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.2683 1.8189 2.0112 33 1 0.9904 3.8297 0.2744 34 1 2.6504 3.9156 0.9112 35 1 0.1018 3.8404 2.5893 36 1 1.7618 3.9263 3.2261 37 1 -0.0562 6.5012 5.1305 38 1 3.8714 1.0198 1.9383 39 1 6.3238 1.0127 1.7271 40 1 5.9597 1.8841 -2.4410 41 1 3.5079 1.8785 -2.2237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353672178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:34 Heat of formation + Delta-G solvation = -184.440609 kcal Electronic energy + Delta-G solvation = -26535.215214 eV Core-core repulsion = 22192.607714 eV Total energy + Delta-G solvation = -4342.607500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.68499 -48.42018 -48.26572 -40.54640 -38.71890 -36.22171 -33.67987 -32.11382 -31.29137 -30.57810 -28.65290 -26.44190 -25.23787 -23.86364 -23.07937 -22.38815 -20.60840 -20.31166 -19.83485 -19.39025 -19.24540 -17.12040 -16.42599 -16.16547 -15.53286 -15.46623 -15.11173 -14.95760 -14.74311 -14.67406 -14.61751 -14.49096 -14.38821 -14.38078 -14.02440 -13.61258 -13.46609 -13.36647 -12.86558 -12.71973 -12.33048 -12.06400 -11.88634 -11.28392 -11.25091 -11.02703 -10.93806 -10.86628 -10.64181 -10.51784 -10.00137 -9.39141 -9.24135 -9.16366 -8.54976 -8.34356 -7.90012 -5.99280 -4.01730 1.02665 1.11501 1.24785 2.60324 3.33719 3.38110 3.40391 3.41917 3.52782 3.76884 4.42370 4.45047 4.54167 4.63618 4.71545 4.96269 5.11282 5.23280 5.30644 5.34163 5.36836 5.62033 5.68037 5.83596 5.86249 6.00134 6.06543 6.12301 6.22072 6.28857 6.30917 6.40436 6.47705 6.61857 6.75031 6.98070 7.44571 7.71375 7.78996 7.92972 8.07989 8.43792 9.05289 9.62000 11.12078 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.003455 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.233634 B = 8102.984272 C = 9831.331856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C 0.123 3.877 4 H 0.086 0.914 5 N -0.677 5.677 6 C 0.066 3.934 7 C 0.028 3.972 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.116 4.116 17 C -0.073 4.073 18 C -0.183 4.183 19 C 0.092 3.908 20 O -0.312 6.312 21 C 0.603 3.397 22 F -0.166 7.166 23 F -0.134 7.134 24 F -0.163 7.163 25 C -0.121 4.121 26 C -0.078 4.078 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.335 0.665 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.261 0.739 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.166 -14.366 -10.803 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C 0.012 3.988 4 H 0.104 0.896 5 N -0.307 5.307 6 C -0.062 4.062 7 C -0.010 4.010 8 C -0.561 4.561 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.118 4.118 17 C -0.092 4.092 18 C -0.201 4.201 19 C 0.050 3.950 20 O -0.233 6.233 21 C 0.512 3.488 22 F -0.148 7.148 23 F -0.116 7.116 24 F -0.145 7.145 25 C -0.139 4.139 26 C -0.097 4.097 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.524 -14.353 -10.842 21.919 hybrid contribution 1.318 1.286 0.301 1.866 sum 13.842 -13.067 -10.541 21.759 Atomic orbital electron populations 1.21645 0.94946 1.00274 1.03115 1.21480 0.96788 0.94623 1.01300 1.20749 0.86937 0.96103 0.94982 0.89601 1.60828 1.56190 1.09531 1.04194 1.22190 0.98251 0.84066 1.01716 1.19031 0.96916 0.94294 0.90729 1.21138 1.43308 0.91708 0.99935 0.92894 1.24985 0.95349 0.98613 0.95295 1.69957 1.43654 1.35330 1.04299 0.86670 0.78359 0.85675 0.77363 1.20218 1.21261 1.20319 1.21025 0.98490 0.99049 0.93285 1.20802 0.92099 0.97170 0.99114 1.21466 0.97056 1.05771 0.95819 1.18673 0.78256 1.02239 0.95792 1.86387 1.18866 1.86804 1.31200 1.19356 0.77345 0.74900 0.77151 1.93298 1.92227 1.41642 1.87650 1.93296 1.28691 1.96270 1.93320 1.93330 1.93023 1.63531 1.64591 1.20380 0.92749 1.03874 0.96939 1.20934 0.93082 0.98000 0.97682 0.93779 0.91028 0.93261 0.92404 0.92052 0.84547 0.92356 0.96556 0.95675 0.96928 0.92953 0.84816 0.85012 0.84607 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.74 37.16 0.36 -1.32 16 2 C -0.10 -1.18 5.59 -26.73 -0.15 -1.33 16 3 C 0.12 1.62 2.21 -68.86 -0.15 1.46 16 4 H 0.09 1.14 7.62 -51.93 -0.40 0.74 16 5 N -0.68 -11.13 5.75 -107.95 -0.62 -11.75 16 6 C 0.07 1.34 5.43 -3.83 -0.02 1.32 16 7 C 0.03 0.71 5.28 -27.88 -0.15 0.57 16 8 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 12 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.12 -1.46 4.65 -104.60 -0.49 -1.95 16 17 C -0.07 -0.93 9.15 -39.61 -0.36 -1.30 16 18 C -0.18 -2.27 8.26 -39.43 -0.33 -2.60 16 19 C 0.09 1.13 6.48 -39.22 -0.25 0.87 16 20 O -0.31 -3.64 10.37 -19.43 -0.20 -3.84 16 21 C 0.60 6.40 3.42 101.05 0.35 6.74 16 22 F -0.17 -1.72 15.56 2.25 0.04 -1.68 16 23 F -0.13 -1.33 17.53 2.25 0.04 -1.29 16 24 F -0.16 -1.87 15.56 2.25 0.04 -1.83 16 25 C -0.12 -1.34 9.99 -39.44 -0.39 -1.73 16 26 C -0.08 -0.87 9.66 -39.60 -0.38 -1.26 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.33 5.35 6.46 -39.29 -0.25 5.10 16 33 H 0.06 1.19 7.94 -51.93 -0.41 0.77 16 34 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.13 1.61 6.48 -52.49 -0.34 1.27 16 39 H 0.13 1.52 5.10 -52.48 -0.27 1.26 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -29.85 353.85 -7.46 -37.31 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.42 Total: 1.17 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.38 Total: -13.99 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.12 Total: -37.88 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -0.20 Total: -3.84 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.85 -7.46 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353672178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.127 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds