Wall clock time and date at job start Tue Mar 31 2020 12:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46728 * 2 1 4 4 H 1.09002 * 109.47238 * 54.38716 * 3 2 1 5 5 N 1.46904 * 109.47537 * 294.38211 * 3 2 1 6 6 C 1.46899 * 110.99759 * 154.14917 * 5 3 2 7 7 C 1.53002 * 109.46586 * 174.81523 * 6 5 3 8 8 C 1.50699 * 109.46994 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00333 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00242 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00116 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00143 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47092 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46840 * 120.00002 * 12 10 8 15 15 H 1.48497 * 109.47164 * 239.99981 * 12 10 8 16 16 C 1.50710 * 109.47173 * 174.38374 * 3 2 1 17 17 C 1.38268 * 119.94265 * 260.00373 * 16 3 2 18 18 C 1.38147 * 120.05407 * 180.02562 * 17 16 3 19 19 C 1.38735 * 119.94210 * 0.25569 * 18 17 16 20 20 O 1.35898 * 120.05338 * 179.74704 * 19 18 17 21 21 C 1.42904 * 116.99883 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47222 * 59.99517 * 21 20 19 23 23 F 1.39897 * 109.47023 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.46795 * 299.99272 * 21 20 19 25 25 C 1.38736 * 119.88909 * 359.46694 * 19 18 17 26 26 C 1.38147 * 119.94183 * 0.55371 * 25 19 18 27 27 H 1.08998 * 109.47387 * 306.23335 * 1 2 3 28 28 H 1.09000 * 109.47290 * 66.23531 * 1 2 3 29 29 H 1.09000 * 109.46960 * 186.23256 * 1 2 3 30 30 H 1.09005 * 109.46925 * 240.00717 * 2 1 3 31 31 H 1.08994 * 109.47098 * 120.00141 * 2 1 3 32 32 H 1.00893 * 110.99299 * 30.19600 * 5 3 2 33 33 H 1.08998 * 109.47336 * 294.81334 * 6 5 3 34 34 H 1.09004 * 109.47398 * 54.82148 * 6 5 3 35 35 H 1.08999 * 109.47493 * 299.99542 * 7 6 5 36 36 H 1.08995 * 109.47291 * 60.00049 * 7 6 5 37 37 H 0.96993 * 120.00453 * 179.97438 * 11 10 8 38 38 H 1.07994 * 119.97073 * 359.97438 * 17 16 3 39 39 H 1.07998 * 120.02654 * 179.97438 * 18 17 16 40 40 H 1.07994 * 120.02846 * 180.25035 * 25 19 18 41 41 H 1.07996 * 119.97083 * 179.71713 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 0.8355 5 7 1.6640 2.0948 -1.2615 6 6 1.5638 3.5505 -1.0918 7 6 1.2989 4.2050 -2.4492 8 6 1.1967 5.6984 -2.2754 9 1 1.3098 6.1371 -1.2949 10 6 0.9598 6.5051 -3.3682 11 7 0.8226 5.9712 -4.5622 12 14 0.8324 8.3563 -3.1525 13 1 1.0218 8.7021 -1.7208 14 1 1.8816 9.0226 -3.9652 15 1 -0.5068 8.8158 -3.6003 16 6 3.5405 1.4449 0.1391 17 6 4.1192 1.6923 1.3702 18 6 5.4945 1.6956 1.5002 19 6 6.2953 1.4556 0.3930 20 8 7.6485 1.4633 0.5172 21 6 8.4100 1.2089 -0.6650 22 9 8.1152 2.1802 -1.6276 23 9 9.7745 1.2546 -0.3596 24 9 8.0857 -0.0568 -1.1650 25 6 5.7121 1.2019 -0.8400 26 6 4.3363 1.2001 -0.9648 27 1 -0.3634 0.6074 0.8289 28 1 -0.3634 0.4141 -0.9405 29 1 -0.3633 -1.0216 0.1116 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 0.8033 1.7128 -1.6235 33 1 0.7445 3.7815 -0.4111 34 1 2.4975 3.9335 -0.6799 35 1 2.1182 3.9742 -3.1300 36 1 0.3653 3.8221 -2.8612 37 1 0.6556 6.5386 -5.3309 38 1 3.4954 1.8840 2.2307 39 1 5.9460 1.8893 2.4620 40 1 6.3332 1.0107 -1.7026 41 1 3.8819 1.0072 -1.9254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353672181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:38 Heat of formation + Delta-G solvation = -185.165839 kcal Electronic energy + Delta-G solvation = -26540.010955 eV Core-core repulsion = 22197.372007 eV Total energy + Delta-G solvation = -4342.638948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.57754 -48.32022 -48.15303 -40.35409 -38.53914 -36.36501 -33.69384 -32.03776 -31.09426 -30.60809 -28.65213 -26.44565 -25.21409 -23.75630 -22.99940 -22.36385 -20.53850 -20.29121 -19.68435 -19.27984 -19.13788 -16.86251 -16.40463 -15.91930 -15.61900 -15.35044 -15.13582 -14.95802 -14.64236 -14.60667 -14.53817 -14.50159 -14.32166 -14.26054 -14.05647 -13.52708 -13.29134 -13.27098 -12.92881 -12.69209 -12.28959 -12.16242 -11.93369 -11.38652 -11.12178 -11.06355 -10.96657 -10.90149 -10.69079 -10.49996 -9.99836 -9.39195 -9.13354 -9.04066 -8.38247 -8.34503 -7.91033 -5.99813 -4.02086 1.19079 1.33819 1.36806 2.72032 3.31145 3.38701 3.42582 3.59162 3.64163 3.89165 4.41065 4.55849 4.66992 4.78512 4.83490 5.04408 5.10027 5.17353 5.32485 5.36530 5.38782 5.54251 5.67425 5.75817 5.91398 5.96053 6.07000 6.13802 6.24001 6.26954 6.31011 6.38030 6.44481 6.68785 6.94133 6.99250 7.45668 7.72073 7.80022 7.94930 8.08143 8.43696 9.05368 9.61854 11.11621 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003561 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.468050 B = 7860.493300 C = 9680.247518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C 0.123 3.877 4 H 0.051 0.949 5 N -0.685 5.685 6 C 0.067 3.933 7 C 0.027 3.973 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.080 4.080 17 C -0.085 4.085 18 C -0.127 4.127 19 C 0.092 3.908 20 O -0.314 6.314 21 C 0.603 3.397 22 F -0.162 7.162 23 F -0.136 7.136 24 F -0.167 7.167 25 C -0.193 4.193 26 C -0.041 4.041 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.340 0.660 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.185 -14.817 11.371 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C 0.013 3.987 4 H 0.069 0.931 5 N -0.318 5.318 6 C -0.061 4.061 7 C -0.010 4.010 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.081 4.081 17 C -0.103 4.103 18 C -0.146 4.146 19 C 0.050 3.950 20 O -0.234 6.234 21 C 0.512 3.488 22 F -0.144 7.144 23 F -0.117 7.117 24 F -0.149 7.149 25 C -0.211 4.211 26 C -0.059 4.059 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.911 -14.718 11.075 21.409 hybrid contribution -0.594 1.211 0.172 1.360 sum 10.317 -13.507 11.247 20.381 Atomic orbital electron populations 1.21837 0.95642 1.01692 1.02235 1.21693 0.95791 0.95674 1.02695 1.20430 0.90475 0.94646 0.93158 0.93135 1.60584 1.39464 1.06206 1.25530 1.22187 0.98812 0.84453 1.00608 1.19038 0.97163 0.94219 0.90585 1.21214 1.48890 0.91993 0.93839 0.92796 1.24987 0.95383 0.98640 0.95269 1.69976 1.49382 1.35127 0.98753 0.86560 0.77611 0.85786 0.78186 1.19781 1.20982 1.21030 1.20001 0.96042 0.99240 0.92849 1.20870 0.93183 0.98606 0.97641 1.20260 0.92530 1.04924 0.96884 1.18696 0.78103 1.02311 0.95887 1.86370 1.18910 1.86891 1.31223 1.19355 0.77309 0.74903 0.77189 1.93333 1.93010 1.63570 1.64510 1.93288 1.28967 1.96269 1.93220 1.93293 1.92421 1.41554 1.87602 1.21555 0.97471 1.06494 0.95591 1.20906 0.91101 0.94268 0.99601 0.92781 0.92131 0.92529 0.90903 0.91591 0.83993 0.96605 0.92426 0.95716 0.96858 0.93070 0.85022 0.84869 0.85221 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.64 37.16 0.36 -1.21 16 2 C -0.12 -1.29 5.49 -26.73 -0.15 -1.44 16 3 C 0.12 1.63 2.23 -68.86 -0.15 1.47 16 4 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 5 N -0.69 -11.21 5.52 -107.94 -0.60 -11.80 16 6 C 0.07 1.37 5.39 -3.82 -0.02 1.35 16 7 C 0.03 0.70 5.28 -27.88 -0.15 0.56 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 9 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 12 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.08 -1.08 4.70 -104.60 -0.49 -1.57 16 17 C -0.08 -1.00 9.66 -39.60 -0.38 -1.39 16 18 C -0.13 -1.51 9.99 -39.43 -0.39 -1.90 16 19 C 0.09 1.20 6.48 -39.21 -0.25 0.95 16 20 O -0.31 -3.91 10.37 -19.42 -0.20 -4.11 16 21 C 0.60 6.87 3.42 101.05 0.35 7.22 16 22 F -0.16 -2.02 15.58 2.25 0.04 -1.98 16 23 F -0.14 -1.43 17.53 2.25 0.04 -1.39 16 24 F -0.17 -1.85 15.54 2.25 0.04 -1.81 16 25 C -0.19 -2.62 8.26 -39.43 -0.33 -2.94 16 26 C -0.04 -0.57 9.32 -39.61 -0.37 -0.94 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.65 6.67 -51.93 -0.35 0.30 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.34 5.31 6.65 -39.30 -0.26 5.05 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.27 8.03 -52.49 -0.42 0.85 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.66 5.10 -52.49 -0.27 1.39 16 41 H 0.14 2.06 7.71 -52.49 -0.40 1.66 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -29.89 354.04 -7.47 -37.36 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.44 Total: 1.12 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.39 Total: -13.30 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.14 Total: -37.93 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.89 -7.47 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353672181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.809 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds