Wall clock time and date at job start Tue Mar 31 2020 12:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46728 * 2 1 4 4 H 1.09002 * 109.47238 * 54.38716 * 3 2 1 5 5 N 1.46904 * 109.47537 * 294.38211 * 3 2 1 6 6 C 1.46899 * 110.99759 * 154.14917 * 5 3 2 7 7 C 1.53002 * 109.46586 * 174.81523 * 6 5 3 8 8 C 1.50699 * 109.46994 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00333 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00242 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00116 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00143 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47092 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46840 * 120.00002 * 12 10 8 15 15 H 1.48497 * 109.47164 * 239.99981 * 12 10 8 16 16 C 1.50710 * 109.47173 * 174.38374 * 3 2 1 17 17 C 1.38268 * 119.94265 * 260.00373 * 16 3 2 18 18 C 1.38147 * 120.05407 * 180.02562 * 17 16 3 19 19 C 1.38735 * 119.94210 * 0.25569 * 18 17 16 20 20 O 1.35898 * 120.05338 * 179.74704 * 19 18 17 21 21 C 1.42904 * 116.99883 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47222 * 59.99517 * 21 20 19 23 23 F 1.39897 * 109.47023 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.46795 * 299.99272 * 21 20 19 25 25 C 1.38736 * 119.88909 * 359.46694 * 19 18 17 26 26 C 1.38147 * 119.94183 * 0.55371 * 25 19 18 27 27 H 1.08998 * 109.47387 * 306.23335 * 1 2 3 28 28 H 1.09000 * 109.47290 * 66.23531 * 1 2 3 29 29 H 1.09000 * 109.46960 * 186.23256 * 1 2 3 30 30 H 1.09005 * 109.46925 * 240.00717 * 2 1 3 31 31 H 1.08994 * 109.47098 * 120.00141 * 2 1 3 32 32 H 1.00893 * 110.99299 * 30.19600 * 5 3 2 33 33 H 1.08998 * 109.47336 * 294.81334 * 6 5 3 34 34 H 1.09004 * 109.47398 * 54.82148 * 6 5 3 35 35 H 1.08999 * 109.47493 * 299.99542 * 7 6 5 36 36 H 1.08995 * 109.47291 * 60.00049 * 7 6 5 37 37 H 0.96993 * 120.00453 * 179.97438 * 11 10 8 38 38 H 1.07994 * 119.97073 * 359.97438 * 17 16 3 39 39 H 1.07998 * 120.02654 * 179.97438 * 18 17 16 40 40 H 1.07994 * 120.02846 * 180.25035 * 25 19 18 41 41 H 1.07996 * 119.97083 * 179.71713 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 0.8355 5 7 1.6640 2.0948 -1.2615 6 6 1.5638 3.5505 -1.0918 7 6 1.2989 4.2050 -2.4492 8 6 1.1967 5.6984 -2.2754 9 1 1.3098 6.1371 -1.2949 10 6 0.9598 6.5051 -3.3682 11 7 0.8226 5.9712 -4.5622 12 14 0.8324 8.3563 -3.1525 13 1 1.0218 8.7021 -1.7208 14 1 1.8816 9.0226 -3.9652 15 1 -0.5068 8.8158 -3.6003 16 6 3.5405 1.4449 0.1391 17 6 4.1192 1.6923 1.3702 18 6 5.4945 1.6956 1.5002 19 6 6.2953 1.4556 0.3930 20 8 7.6485 1.4633 0.5172 21 6 8.4100 1.2089 -0.6650 22 9 8.1152 2.1802 -1.6276 23 9 9.7745 1.2546 -0.3596 24 9 8.0857 -0.0568 -1.1650 25 6 5.7121 1.2019 -0.8400 26 6 4.3363 1.2001 -0.9648 27 1 -0.3634 0.6074 0.8289 28 1 -0.3634 0.4141 -0.9405 29 1 -0.3633 -1.0216 0.1116 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 0.8033 1.7128 -1.6235 33 1 0.7445 3.7815 -0.4111 34 1 2.4975 3.9335 -0.6799 35 1 2.1182 3.9742 -3.1300 36 1 0.3653 3.8221 -2.8612 37 1 0.6556 6.5386 -5.3309 38 1 3.4954 1.8840 2.2307 39 1 5.9460 1.8893 2.4620 40 1 6.3332 1.0107 -1.7026 41 1 3.8819 1.0072 -1.9254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353672181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:37 Heat of formation + Delta-G solvation = -201.841516 kcal Electronic energy + Delta-G solvation = -26540.734067 eV Core-core repulsion = 22197.372007 eV Total energy + Delta-G solvation = -4343.362060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.49932 -49.21736 -49.09536 -41.33758 -39.58904 -37.54166 -35.51654 -33.68332 -32.08355 -31.61427 -30.34581 -27.52757 -26.46521 -25.39383 -24.01268 -23.31218 -22.32824 -21.33610 -20.65308 -20.20968 -20.06643 -18.51190 -17.83107 -17.01183 -16.82034 -16.54123 -16.30142 -16.19901 -15.87170 -15.64028 -15.55104 -15.49174 -15.36356 -15.20169 -15.05351 -14.90978 -14.45185 -14.36578 -14.24137 -13.89082 -13.61557 -13.49499 -13.17762 -12.93137 -12.82995 -12.53335 -12.21217 -12.06833 -11.97283 -11.79573 -11.61113 -11.34325 -11.17531 -10.55985 -10.02675 -9.39164 -9.27011 -8.19658 -6.30459 0.18495 0.34813 0.43226 1.39695 1.40527 1.53299 1.78734 2.40558 2.60055 2.72885 2.94938 3.14159 3.33606 3.68188 3.77460 3.82281 4.09882 4.19587 4.25278 4.41838 4.43487 4.54029 4.60303 4.63433 4.76297 4.92912 5.00773 5.09740 5.11353 5.14333 5.23178 5.27167 5.40318 5.45347 5.46501 5.62267 5.71910 5.83333 5.95289 6.18339 6.32878 6.61324 6.87559 7.38811 8.92538 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003561 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.468050 B = 7860.493300 C = 9680.247518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C 0.125 3.875 4 H 0.057 0.943 5 N -0.689 5.689 6 C 0.090 3.910 7 C 0.034 3.966 8 C -0.542 4.542 9 H 0.058 0.942 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.280 1.280 15 H -0.276 1.276 16 C -0.092 4.092 17 C -0.080 4.080 18 C -0.124 4.124 19 C 0.081 3.919 20 O -0.315 6.315 21 C 0.607 3.393 22 F -0.170 7.170 23 F -0.129 7.129 24 F -0.165 7.165 25 C -0.203 4.203 26 C -0.058 4.058 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.344 0.656 33 H 0.021 0.979 34 H 0.050 0.950 35 H -0.009 1.009 36 H -0.008 1.008 37 H 0.263 0.737 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.199 -14.622 13.544 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.075 0.925 5 N -0.322 5.322 6 C -0.039 4.039 7 C -0.003 4.003 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.787 3.213 13 H -0.186 1.186 14 H -0.206 1.206 15 H -0.202 1.202 16 C -0.093 4.093 17 C -0.099 4.099 18 C -0.142 4.142 19 C 0.039 3.961 20 O -0.235 6.235 21 C 0.516 3.484 22 F -0.152 7.152 23 F -0.111 7.111 24 F -0.147 7.147 25 C -0.221 4.221 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.010 0.990 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.177 0.823 39 H 0.177 0.823 40 H 0.147 0.853 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.929 -14.542 13.261 22.512 hybrid contribution -0.561 1.086 -0.511 1.325 sum 10.368 -13.456 12.750 21.240 Atomic orbital electron populations 1.21830 0.95044 1.02733 1.01656 1.21647 0.96191 0.93869 1.03370 1.20517 0.90570 0.95901 0.91429 0.92464 1.60434 1.39804 1.04060 1.27934 1.21721 0.98366 0.86648 0.97146 1.18883 0.94700 0.93914 0.92808 1.21650 1.48799 0.93452 0.94166 0.92345 1.25927 0.94829 1.03939 0.94868 1.70106 1.50203 1.37139 0.99679 0.85433 0.77812 0.79361 0.78649 1.18586 1.20579 1.20208 1.20120 0.96011 0.99789 0.93414 1.21173 0.93548 0.97345 0.97787 1.20616 0.92502 1.03584 0.97520 1.18901 0.78476 1.02575 0.96136 1.86360 1.18687 1.86935 1.31526 1.19290 0.77446 0.74773 0.76899 1.93319 1.93114 1.63936 1.64820 1.93304 1.28378 1.96234 1.93136 1.93296 1.92445 1.41359 1.87563 1.21595 0.97351 1.07022 0.96159 1.20876 0.91582 0.95585 0.99567 0.92523 0.93361 0.90871 0.91414 0.89692 0.83539 0.96095 0.93180 0.99033 0.98952 0.92820 0.82256 0.82307 0.85258 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.64 71.98 0.69 -2.13 16 2 C -0.11 -2.21 5.49 30.59 0.17 -2.04 16 3 C 0.13 3.15 2.23 44.17 0.10 3.24 16 4 H 0.06 1.39 7.70 -2.39 -0.02 1.38 16 5 N -0.69 -22.59 5.52 -495.42 -2.73 -25.33 16 6 C 0.09 3.69 5.39 86.30 0.47 4.15 16 7 C 0.03 1.82 5.28 29.85 0.16 1.98 16 8 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 9 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 10 C 0.00 0.13 5.46 84.65 0.46 0.59 16 11 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 12 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 13 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 C -0.09 -2.37 4.70 -19.85 -0.09 -2.46 16 17 C -0.08 -1.71 9.66 22.26 0.22 -1.49 16 18 C -0.12 -2.64 9.99 22.37 0.22 -2.42 16 19 C 0.08 2.03 6.48 22.51 0.15 2.18 16 20 O -0.31 -7.48 10.37 -92.40 -0.96 -8.44 16 21 C 0.61 13.45 3.42 113.37 0.39 13.84 16 22 F -0.17 -4.21 15.58 44.97 0.70 -3.51 16 23 F -0.13 -2.60 17.53 44.97 0.79 -1.81 16 24 F -0.16 -3.58 15.54 44.97 0.70 -2.88 16 25 C -0.20 -5.50 8.26 22.37 0.18 -5.32 16 26 C -0.06 -1.64 9.32 22.25 0.21 -1.43 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.99 6.67 -2.39 -0.02 0.98 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.34 10.84 6.65 -89.70 -0.60 10.24 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 2.12 7.95 -2.38 -0.02 2.10 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.16 2.46 8.03 -2.91 -0.02 2.44 16 39 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.13 3.39 5.10 -2.91 -0.01 3.38 16 41 H 0.13 3.91 7.71 -2.91 -0.02 3.89 16 Total: -1.00 -64.54 354.04 4.81 -59.73 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.46 Total: 14.55 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.55 Total: -22.10 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.45 Total: -82.07 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.96 Total: -8.44 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 2.19 Total: -8.19 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.54 4.81 -59.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353672181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.116 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds