Wall clock time and date at job start Tue Mar 31 2020 12:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 H 1.09001 * 109.47249 * 180.48959 * 3 2 1 5 5 C 1.50704 * 109.47063 * 300.48871 * 3 2 1 6 6 H 1.08003 * 120.00061 * 120.00340 * 5 3 2 7 7 C 1.37874 * 119.99984 * 299.99946 * 5 3 2 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00246 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.46996 * 59.99966 * 9 7 5 11 11 H 1.48496 * 109.46878 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46635 * 299.99796 * 9 7 5 13 13 N 1.46902 * 109.47629 * 60.48602 * 3 2 1 14 14 C 1.46905 * 110.99976 * 86.21319 * 13 3 2 15 15 C 1.50691 * 109.46872 * 175.26630 * 14 13 3 16 16 C 1.38165 * 120.02847 * 259.99947 * 15 14 13 17 17 C 1.38249 * 120.05871 * 180.02562 * 16 15 14 18 18 C 1.38290 * 120.10632 * 359.95310 * 17 16 15 19 19 C 1.38120 * 120.05979 * 0.02863 * 18 17 16 20 20 C 1.38714 * 120.03002 * 80.02867 * 15 14 13 21 21 O 1.35900 * 120.05039 * 359.95180 * 20 15 14 22 22 C 1.42901 * 116.99676 * 180.02562 * 21 20 15 23 23 C 1.52997 * 109.47309 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.47250 * 59.99677 * 23 22 21 25 25 F 1.39896 * 109.47584 * 179.97438 * 23 22 21 26 26 F 1.39901 * 109.47003 * 299.99786 * 23 22 21 27 27 H 1.09000 * 109.47264 * 295.67801 * 1 2 3 28 28 H 1.09002 * 109.47160 * 55.68075 * 1 2 3 29 29 H 1.09005 * 109.47364 * 175.67740 * 1 2 3 30 30 H 1.09000 * 109.47339 * 240.00012 * 2 1 3 31 31 H 1.08994 * 109.46881 * 119.99292 * 2 1 3 32 32 H 0.96997 * 120.00008 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00108 * 210.17381 * 13 3 2 34 34 H 1.09001 * 109.46713 * 55.26591 * 14 13 3 35 35 H 1.08997 * 109.46696 * 295.27169 * 14 13 3 36 36 H 1.08006 * 119.97382 * 0.02651 * 16 15 14 37 37 H 1.07995 * 119.94911 * 179.97438 * 17 16 15 38 38 H 1.08001 * 119.96961 * 179.74863 * 18 17 16 39 39 H 1.07995 * 120.02895 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47038 * 299.99779 * 22 21 20 41 41 H 1.08998 * 109.47433 * 59.99911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0088 5 6 1.5277 2.1564 -1.2244 6 1 0.9076 3.0342 -1.1178 7 6 1.8507 1.6889 -2.4806 8 7 2.6055 0.6197 -2.6104 9 14 1.2164 2.5742 -3.9983 10 1 1.7119 3.9740 -3.9981 11 1 1.7021 1.8778 -5.2167 12 1 -0.2685 2.5746 -3.9866 13 7 1.5599 2.1317 1.2052 14 6 2.4682 1.9062 2.3376 15 6 2.0084 2.7194 3.5200 16 6 2.6262 3.9191 3.8163 17 6 2.2052 4.6655 4.9013 18 6 1.1643 4.2139 5.6919 19 6 0.5431 3.0154 5.3996 20 6 0.9648 2.2639 4.3122 21 8 0.3552 1.0843 4.0225 22 6 -0.7124 0.6778 4.8810 23 6 -1.2710 -0.6630 4.4004 24 9 -0.2576 -1.6272 4.4279 25 9 -2.3158 -1.0613 5.2412 26 9 -1.7500 -0.5270 3.0930 27 1 -0.3634 0.4453 0.9262 28 1 -0.3633 0.5794 -0.8488 29 1 -0.3634 -1.0248 -0.0775 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.8330 0.2910 -3.4941 33 1 1.4353 3.1179 1.0324 34 1 3.4778 2.2084 2.0593 35 1 2.4652 0.8485 2.6007 36 1 3.4389 4.2743 3.1999 37 1 2.6897 5.6028 5.1315 38 1 0.8399 4.7967 6.5413 39 1 -0.2694 2.6630 6.0176 40 1 -0.3393 0.5723 5.8997 41 1 -1.5022 1.4287 4.8592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358297523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:39 Heat of formation + Delta-G solvation = -167.954534 kcal Electronic energy + Delta-G solvation = -27573.476469 eV Core-core repulsion = 23231.583859 eV Total energy + Delta-G solvation = -4341.892610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.14216 -47.72821 -47.53450 -40.30923 -37.64600 -36.13423 -33.20765 -31.38218 -30.78377 -29.99675 -29.03484 -26.44500 -24.32833 -23.95446 -22.96081 -22.02429 -21.15720 -18.99889 -18.85037 -18.64661 -17.82489 -17.69688 -16.44110 -15.91237 -15.72958 -15.45597 -14.83373 -14.58762 -14.41781 -14.35177 -14.03903 -13.86122 -13.73849 -13.71306 -13.57289 -13.42638 -13.15646 -12.70874 -12.53642 -12.15292 -11.90101 -11.69869 -11.66280 -11.33210 -11.16543 -10.92868 -10.83336 -10.58334 -10.29997 -9.97759 -9.61414 -9.25717 -8.87934 -8.68993 -8.40465 -8.14127 -7.12743 -5.96069 -4.01335 1.33194 1.45096 2.20064 3.05669 3.33975 3.38727 3.41432 3.62143 3.74716 3.87104 4.27713 4.44919 4.60325 4.76807 4.79537 4.81600 5.06374 5.32759 5.34777 5.35723 5.61524 5.68493 5.91678 6.01425 6.32628 6.37535 6.48118 6.58454 6.69520 6.79006 6.83605 7.00242 7.27399 7.38688 7.43427 7.60713 7.85323 7.86503 7.93839 8.35361 8.47317 8.74122 9.08074 9.62936 11.09665 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.004728 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.164057 B = 5921.359139 C = 7709.447888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.104 3.896 15 C -0.092 4.092 16 C -0.078 4.078 17 C -0.154 4.154 18 C -0.088 4.088 19 C -0.214 4.214 20 C 0.146 3.854 21 O -0.276 6.276 22 C 0.014 3.986 23 C 0.464 3.536 24 F -0.173 7.173 25 F -0.179 7.179 26 F -0.163 7.163 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.010 0.990 30 H 0.084 0.916 31 H 0.009 0.991 32 H 0.260 0.740 33 H 0.328 0.672 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 2.853 18.951 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.138 4.138 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.304 5.304 14 C -0.026 4.026 15 C -0.093 4.093 16 C -0.097 4.097 17 C -0.173 4.173 18 C -0.107 4.107 19 C -0.232 4.232 20 C 0.100 3.900 21 O -0.189 6.189 22 C -0.064 4.064 23 C 0.410 3.590 24 F -0.155 7.155 25 F -0.160 7.160 26 F -0.145 7.145 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.102 0.898 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.145 0.855 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.923 2.025 18.786 19.525 hybrid contribution 0.155 0.850 -0.951 1.284 sum -4.769 2.875 17.835 18.684 Atomic orbital electron populations 1.21420 0.97405 0.97207 1.01375 1.21387 0.95140 0.98078 0.99188 1.19148 0.92909 0.91626 0.85326 0.98316 1.21144 1.31563 1.11890 0.90358 0.92451 1.24871 0.95100 0.95001 0.98809 1.69882 1.36900 1.22791 1.23164 0.86655 0.79321 0.79621 0.82356 1.20457 1.21394 1.20248 1.60759 1.47794 1.15799 1.06065 1.20770 0.93986 0.98639 0.89161 1.19495 0.95685 0.96385 0.97766 1.21001 0.99102 0.92894 0.96656 1.21022 0.98866 1.00648 0.96737 1.20827 0.95617 0.95149 0.99088 1.21155 1.04222 0.98150 0.99699 1.18684 0.92778 0.84731 0.93771 1.86246 1.45665 1.36234 1.50746 1.23717 0.93189 0.93490 0.96001 1.19980 0.76098 0.86812 0.76147 1.93236 1.59728 1.66355 1.96166 1.93197 1.59309 1.91862 1.71649 1.93301 1.88377 1.95822 1.36961 0.93578 0.92826 0.97094 0.89812 0.97224 0.92972 0.85471 0.95417 0.90760 0.85304 0.86065 0.86070 0.85845 0.87993 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.53 37.16 0.35 -2.42 16 2 C -0.10 -2.50 5.59 -26.73 -0.15 -2.65 16 3 C 0.22 5.46 2.31 -68.86 -0.16 5.30 16 4 H 0.00 -0.02 7.70 -51.93 -0.40 -0.42 16 5 C -0.51 -13.80 7.23 -34.44 -0.25 -14.05 16 6 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.67 -14.33 5.67 -109.22 -0.62 -14.95 16 14 C 0.10 1.91 5.33 -4.98 -0.03 1.88 16 15 C -0.09 -1.42 5.36 -104.48 -0.56 -1.98 16 16 C -0.08 -1.02 9.66 -39.60 -0.38 -1.40 16 17 C -0.15 -1.71 10.04 -39.56 -0.40 -2.10 16 18 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 19 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 20 C 0.15 2.07 6.66 -39.22 -0.26 1.81 16 21 O -0.28 -4.11 9.26 -19.42 -0.18 -4.29 16 22 C 0.01 0.15 4.70 37.16 0.17 0.32 16 23 C 0.46 5.74 3.32 37.16 0.12 5.86 16 24 F -0.17 -2.44 17.26 2.25 0.04 -2.40 16 25 F -0.18 -1.95 17.32 2.25 0.04 -1.91 16 26 F -0.16 -2.51 17.26 2.25 0.04 -2.47 16 27 H 0.05 1.06 7.75 -51.93 -0.40 0.66 16 28 H 0.05 1.36 7.05 -51.93 -0.37 0.99 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 2.33 6.08 -51.93 -0.32 2.01 16 31 H 0.01 0.22 7.61 -51.93 -0.40 -0.17 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.33 6.92 8.12 -39.29 -0.32 6.61 16 34 H 0.03 0.51 7.80 -51.93 -0.40 0.10 16 35 H 0.07 1.46 7.34 -51.93 -0.38 1.08 16 36 H 0.13 1.55 8.04 -52.48 -0.42 1.13 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.04 6.30 -52.49 -0.33 0.70 16 40 H 0.10 0.77 7.66 -51.93 -0.40 0.38 16 41 H 0.11 0.89 7.66 -51.93 -0.40 0.49 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -29.92 352.34 -7.48 -37.40 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.34 Total: 3.56 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.38 Total: -11.84 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.01 Total: -39.71 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.18 Total: -4.29 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.12 Total: -6.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.92 -7.48 -37.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358297523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.550 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds