Wall clock time and date at job start Tue Mar 31 2020 12:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 H 1.09001 * 109.47249 * 180.48959 * 3 2 1 5 5 C 1.50704 * 109.47063 * 300.48871 * 3 2 1 6 6 H 1.08003 * 120.00061 * 120.00340 * 5 3 2 7 7 C 1.37874 * 119.99984 * 299.99946 * 5 3 2 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00246 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.46996 * 59.99966 * 9 7 5 11 11 H 1.48496 * 109.46878 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46635 * 299.99796 * 9 7 5 13 13 N 1.46902 * 109.47629 * 60.48602 * 3 2 1 14 14 C 1.46905 * 110.99976 * 86.21319 * 13 3 2 15 15 C 1.50691 * 109.46872 * 175.26630 * 14 13 3 16 16 C 1.38165 * 120.02847 * 259.99947 * 15 14 13 17 17 C 1.38249 * 120.05871 * 180.02562 * 16 15 14 18 18 C 1.38290 * 120.10632 * 359.95310 * 17 16 15 19 19 C 1.38120 * 120.05979 * 0.02863 * 18 17 16 20 20 C 1.38714 * 120.03002 * 80.02867 * 15 14 13 21 21 O 1.35900 * 120.05039 * 359.95180 * 20 15 14 22 22 C 1.42901 * 116.99676 * 180.02562 * 21 20 15 23 23 C 1.52997 * 109.47309 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.47250 * 59.99677 * 23 22 21 25 25 F 1.39896 * 109.47584 * 179.97438 * 23 22 21 26 26 F 1.39901 * 109.47003 * 299.99786 * 23 22 21 27 27 H 1.09000 * 109.47264 * 295.67801 * 1 2 3 28 28 H 1.09002 * 109.47160 * 55.68075 * 1 2 3 29 29 H 1.09005 * 109.47364 * 175.67740 * 1 2 3 30 30 H 1.09000 * 109.47339 * 240.00012 * 2 1 3 31 31 H 1.08994 * 109.46881 * 119.99292 * 2 1 3 32 32 H 0.96997 * 120.00008 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00108 * 210.17381 * 13 3 2 34 34 H 1.09001 * 109.46713 * 55.26591 * 14 13 3 35 35 H 1.08997 * 109.46696 * 295.27169 * 14 13 3 36 36 H 1.08006 * 119.97382 * 0.02651 * 16 15 14 37 37 H 1.07995 * 119.94911 * 179.97438 * 17 16 15 38 38 H 1.08001 * 119.96961 * 179.74863 * 18 17 16 39 39 H 1.07995 * 120.02895 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47038 * 299.99779 * 22 21 20 41 41 H 1.08998 * 109.47433 * 59.99911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0088 5 6 1.5277 2.1564 -1.2244 6 1 0.9076 3.0342 -1.1178 7 6 1.8507 1.6889 -2.4806 8 7 2.6055 0.6197 -2.6104 9 14 1.2164 2.5742 -3.9983 10 1 1.7119 3.9740 -3.9981 11 1 1.7021 1.8778 -5.2167 12 1 -0.2685 2.5746 -3.9866 13 7 1.5599 2.1317 1.2052 14 6 2.4682 1.9062 2.3376 15 6 2.0084 2.7194 3.5200 16 6 2.6262 3.9191 3.8163 17 6 2.2052 4.6655 4.9013 18 6 1.1643 4.2139 5.6919 19 6 0.5431 3.0154 5.3996 20 6 0.9648 2.2639 4.3122 21 8 0.3552 1.0843 4.0225 22 6 -0.7124 0.6778 4.8810 23 6 -1.2710 -0.6630 4.4004 24 9 -0.2576 -1.6272 4.4279 25 9 -2.3158 -1.0613 5.2412 26 9 -1.7500 -0.5270 3.0930 27 1 -0.3634 0.4453 0.9262 28 1 -0.3633 0.5794 -0.8488 29 1 -0.3634 -1.0248 -0.0775 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.8330 0.2910 -3.4941 33 1 1.4353 3.1179 1.0324 34 1 3.4778 2.2084 2.0593 35 1 2.4652 0.8485 2.6007 36 1 3.4389 4.2743 3.1999 37 1 2.6897 5.6028 5.1315 38 1 0.8399 4.7967 6.5413 39 1 -0.2694 2.6630 6.0176 40 1 -0.3393 0.5723 5.8997 41 1 -1.5022 1.4287 4.8592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358297523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:38 Heat of formation + Delta-G solvation = -185.173239 kcal Electronic energy + Delta-G solvation = -27574.223128 eV Core-core repulsion = 23231.583859 eV Total energy + Delta-G solvation = -4342.639269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.13793 -48.68991 -48.61429 -41.27581 -38.69275 -37.87136 -34.87275 -33.13491 -31.77242 -31.39219 -30.10566 -28.28803 -25.85899 -25.02568 -24.83083 -22.93684 -22.28249 -20.91576 -19.87931 -19.65399 -18.83754 -18.70904 -18.24735 -16.99708 -16.79356 -16.72030 -16.43708 -15.74920 -15.53259 -15.46175 -15.31753 -15.10124 -15.06294 -15.04819 -14.78819 -14.76838 -14.24733 -14.18891 -13.89450 -13.63805 -13.43959 -13.15486 -12.84122 -12.76223 -12.66751 -12.41598 -12.29456 -12.17478 -11.97032 -11.77000 -11.48723 -11.26743 -10.80101 -10.51452 -9.81111 -9.12499 -8.91864 -8.07467 -6.20025 0.40289 0.52732 1.30529 1.42801 1.44760 1.51814 2.12547 2.43747 2.72277 2.82977 2.95467 3.20911 3.36181 3.75755 3.81281 3.94572 3.99919 4.02661 4.26117 4.39886 4.43755 4.61885 4.66664 4.70470 4.80226 4.88576 4.96825 5.12291 5.31801 5.39490 5.43576 5.52950 5.57025 5.64154 5.73130 5.82242 5.87843 5.90339 6.28940 6.35854 6.53368 6.82390 7.06103 7.48496 8.97509 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.004728 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.164057 B = 5921.359139 C = 7709.447888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.093 4.093 3 C 0.224 3.776 4 H -0.037 1.037 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.113 3.887 15 C -0.124 4.124 16 C -0.086 4.086 17 C -0.153 4.153 18 C -0.079 4.079 19 C -0.208 4.208 20 C 0.131 3.869 21 O -0.311 6.311 22 C 0.013 3.987 23 C 0.461 3.539 24 F -0.188 7.188 25 F -0.169 7.169 26 F -0.186 7.186 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.011 0.989 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.019 0.981 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 4.803 21.110 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.132 4.132 3 C 0.116 3.884 4 H -0.019 1.019 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.297 5.297 14 C -0.016 4.016 15 C -0.126 4.126 16 C -0.105 4.105 17 C -0.171 4.171 18 C -0.097 4.097 19 C -0.227 4.227 20 C 0.086 3.914 21 O -0.225 6.225 22 C -0.064 4.064 23 C 0.406 3.594 24 F -0.169 7.169 25 F -0.150 7.150 26 F -0.167 7.167 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.355 3.985 20.968 22.269 hybrid contribution 0.599 0.236 -1.497 1.629 sum -5.756 4.221 19.471 20.738 Atomic orbital electron populations 1.21233 0.96026 0.97740 1.00718 1.21251 0.96163 0.97892 0.97853 1.18915 0.90666 0.92033 0.86796 1.01941 1.21394 1.31429 1.11953 0.91251 0.92478 1.25639 0.95253 0.95658 1.01682 1.70026 1.37913 1.24063 1.23687 0.85653 0.78755 0.78738 0.78732 1.19555 1.21185 1.19817 1.60646 1.48396 1.15431 1.05248 1.20581 0.93114 0.98283 0.89605 1.19290 0.98039 0.97549 0.97676 1.21104 0.99199 0.92479 0.97722 1.21356 0.98954 1.01187 0.95642 1.21324 0.94295 0.94707 0.99342 1.21523 1.04669 0.97868 0.98624 1.18836 0.92744 0.85042 0.94737 1.86169 1.46950 1.36836 1.52523 1.24004 0.93093 0.92575 0.96722 1.20342 0.76010 0.87597 0.75408 1.93205 1.60393 1.67164 1.96173 1.93212 1.58851 1.91895 1.71063 1.93251 1.88677 1.95951 1.38852 0.93046 0.94584 0.95750 0.92532 0.97041 0.93052 0.85399 0.96299 0.92758 0.85325 0.83400 0.82359 0.82529 0.84554 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.82 9.53 71.98 0.69 -4.13 16 2 C -0.09 -4.85 5.59 30.59 0.17 -4.68 16 3 C 0.22 11.76 2.31 44.17 0.10 11.86 16 4 H -0.04 -2.16 7.70 -2.39 -0.02 -2.18 16 5 C -0.52 -28.82 7.23 25.60 0.19 -28.64 16 6 H 0.06 3.10 7.60 -2.91 -0.02 3.07 16 7 C 0.02 0.94 5.30 84.65 0.45 1.39 16 8 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 9 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.67 -29.36 5.67 -499.46 -2.83 -32.19 16 14 C 0.11 4.36 5.33 85.55 0.46 4.82 16 15 C -0.12 -3.82 5.36 -19.77 -0.11 -3.92 16 16 C -0.09 -2.18 9.66 22.25 0.22 -1.96 16 17 C -0.15 -2.89 10.04 22.28 0.22 -2.66 16 18 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 19 C -0.21 -3.88 9.04 22.36 0.20 -3.68 16 20 C 0.13 3.54 6.66 22.51 0.15 3.69 16 21 O -0.31 -8.98 9.26 -92.42 -0.86 -9.84 16 22 C 0.01 0.24 4.70 71.98 0.34 0.57 16 23 C 0.46 10.92 3.32 71.98 0.24 11.16 16 24 F -0.19 -5.25 17.26 44.97 0.78 -4.47 16 25 F -0.17 -3.40 17.32 44.97 0.78 -2.62 16 26 F -0.19 -5.67 17.26 44.97 0.78 -4.90 16 27 H 0.05 2.40 7.75 -2.39 -0.02 2.38 16 28 H 0.04 1.83 7.05 -2.39 -0.02 1.82 16 29 H 0.02 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.06 3.27 6.08 -2.39 -0.01 3.25 16 31 H 0.01 0.56 7.61 -2.39 -0.02 0.54 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.33 14.25 8.12 -89.70 -0.73 13.52 16 34 H 0.02 0.74 7.80 -2.39 -0.02 0.72 16 35 H 0.05 2.26 7.34 -2.39 -0.02 2.24 16 36 H 0.13 3.09 8.04 -2.91 -0.02 3.07 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.16 1.79 6.30 -2.91 -0.02 1.77 16 40 H 0.14 1.57 7.66 -2.39 -0.02 1.55 16 41 H 0.13 1.75 7.66 -2.39 -0.02 1.73 16 Total: -1.00 -67.11 352.34 4.78 -62.33 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.33 Total: 16.38 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.53 Total: -17.24 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.59 Total: -85.81 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.86 Total: -9.84 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 2.33 Total: -11.99 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.11 4.78 -62.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358297523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.839 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds