Wall clock time and date at job start Tue Mar 31 2020 10:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34750 * 120.32542 * 2 1 4 4 C 1.46962 * 118.44729 * 179.97438 * 3 2 1 5 5 N 1.32018 * 120.52571 * 180.02562 * 4 3 2 6 6 C 1.46495 * 120.00223 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47443 * 119.99603 * 6 5 4 8 8 C 1.53001 * 109.46832 * 299.99909 * 7 6 5 9 9 C 1.53000 * 109.47242 * 59.99699 * 7 6 5 10 10 C 1.50695 * 109.47024 * 179.97438 * 7 6 5 11 11 H 1.07998 * 120.00563 * 1.34981 * 10 7 6 12 12 C 1.37881 * 119.99983 * 181.34915 * 10 7 6 13 13 N 1.31511 * 120.00186 * 193.97494 * 12 10 7 14 14 Si 1.86798 * 119.99731 * 13.97780 * 12 10 7 15 15 H 1.48498 * 109.47305 * 84.55566 * 14 12 10 16 16 H 1.48504 * 109.46923 * 204.55575 * 14 12 10 17 17 H 1.48499 * 109.47355 * 324.55378 * 14 12 10 18 18 N 1.34861 * 118.95326 * 359.97438 * 4 3 2 19 19 C 1.31730 * 120.52431 * 0.02562 * 18 4 3 20 20 C 1.46728 * 119.15059 * 179.97438 * 19 18 4 21 21 C 1.36560 * 125.45356 * 359.97438 * 20 19 18 22 22 C 1.37611 * 113.28788 * 179.97438 * 21 20 19 23 23 C 1.33728 * 115.08737 * 359.97438 * 22 21 20 24 24 S 1.70612 * 110.96241 * 0.02562 * 23 22 21 25 25 N 1.36599 * 121.69936 * 0.27021 * 19 18 4 26 26 H 0.97004 * 119.48185 * 179.70606 * 25 19 18 27 27 H 1.09007 * 109.47071 * 90.00583 * 1 2 3 28 28 H 1.09002 * 109.46906 * 210.00014 * 1 2 3 29 29 H 1.08996 * 109.47436 * 330.00254 * 1 2 3 30 30 H 1.08003 * 120.77478 * 359.95574 * 3 2 1 31 31 H 1.09007 * 109.46692 * 239.99626 * 6 5 4 32 32 H 1.09003 * 109.47146 * 359.97438 * 6 5 4 33 33 H 1.08999 * 109.47243 * 69.32787 * 8 7 6 34 34 H 1.09001 * 109.46695 * 189.33075 * 8 7 6 35 35 H 1.09003 * 109.47047 * 309.32354 * 8 7 6 36 36 H 1.09007 * 109.47012 * 59.99904 * 9 7 6 37 37 H 1.08995 * 109.47593 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.47317 * 300.00123 * 9 7 6 39 39 H 0.97000 * 120.00309 * 180.02562 * 13 12 10 40 40 H 1.07995 * 123.36055 * 359.97438 * 21 20 19 41 41 H 1.07992 * 122.45908 * 179.97438 * 22 21 20 42 42 H 1.07990 * 124.51761 * 180.26726 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.1631 0.0000 4 6 3.6562 1.1150 0.0006 5 7 4.3637 2.2296 0.0011 6 6 5.8273 2.1682 0.0022 7 6 6.3682 2.8673 -1.2466 8 6 5.8294 2.1679 -2.4962 9 6 5.9190 4.3299 -1.2472 10 6 7.8738 2.8047 -1.2450 11 1 8.3924 2.2963 -0.4457 12 6 8.5895 3.3964 -2.2642 13 7 9.8651 3.1170 -2.4203 14 14 7.7472 4.5951 -3.4231 15 1 7.7446 5.9508 -2.8170 16 1 8.4791 4.6318 -4.7148 17 1 6.3485 4.1557 -3.6590 18 7 4.2700 -0.0859 0.0016 19 6 3.5642 -1.1981 0.0016 20 6 4.2631 -2.4882 0.0022 21 6 5.6185 -2.6547 0.0022 22 6 6.0044 -3.9756 0.0034 23 6 5.0008 -4.8595 0.0048 24 16 3.4898 -4.0673 0.0040 25 7 2.1983 -1.1814 -0.0049 26 1 1.7106 -2.0199 -0.0091 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6654 2.1087 -0.0007 31 1 6.2111 2.6665 0.8926 32 1 6.1473 1.1262 0.0030 33 1 4.7592 2.3549 -2.5843 34 1 6.3398 2.5554 -3.3780 35 1 6.0055 1.0952 -2.4166 36 1 6.3028 4.8282 -0.3569 37 1 6.3039 4.8279 -2.1371 38 1 4.8300 4.3756 -1.2481 39 1 10.3687 3.5336 -3.1371 40 1 6.3180 -1.8319 0.0015 41 1 7.0416 -4.2765 0.0032 42 1 5.1297 -5.9316 0.0099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413415987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:56 Heat of formation + Delta-G solvation = 113.231523 kcal Electronic energy + Delta-G solvation = -23969.945915 eV Core-core repulsion = 20657.148809 eV Total energy + Delta-G solvation = -3312.797105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62696 -37.97154 -36.82296 -34.89360 -33.88262 -31.78973 -30.58391 -29.74425 -28.01908 -25.97165 -25.37261 -25.29122 -24.53831 -22.69706 -21.25488 -19.46849 -18.87755 -18.55497 -17.41143 -16.94400 -15.97216 -15.83050 -15.34388 -15.16546 -14.67421 -14.00170 -13.70810 -13.49287 -13.21426 -13.20327 -12.88142 -12.82189 -12.73644 -12.61535 -12.46245 -12.31606 -11.85266 -11.68500 -11.49087 -11.28111 -10.76337 -10.44072 -10.12975 -9.95104 -9.87115 -9.79974 -9.65104 -8.86731 -8.83221 -8.73092 -8.49847 -8.36658 -8.15871 -7.03993 -5.94662 -3.88288 0.18978 1.12548 1.55365 1.58146 1.71954 2.63488 2.65723 3.43931 3.53491 3.55940 4.12167 4.16596 4.29898 4.57744 4.71370 4.77542 4.98617 5.15080 5.16973 5.25620 5.38522 5.40052 5.51215 5.61153 5.83268 5.92757 6.07570 6.22342 6.24127 6.34370 6.47376 6.57105 6.69810 6.85346 6.94335 6.98853 7.06347 7.12241 7.18766 7.26083 7.58640 7.81761 8.00229 8.27423 8.67705 8.74622 9.11034 9.72816 11.18886 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.004119 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.053355 B = 6795.543495 C = 8392.909464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.118 3.882 3 C -0.183 4.183 4 C 0.317 3.683 5 N -0.507 5.507 6 C 0.067 3.933 7 C 0.049 3.951 8 C -0.130 4.130 9 C -0.135 4.135 10 C -0.504 4.504 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.900 5.900 14 Si 0.886 3.114 15 H -0.288 1.288 16 H -0.309 1.309 17 H -0.249 1.249 18 N -0.526 5.526 19 C 0.468 3.532 20 C -0.195 4.195 21 C -0.047 4.047 22 C -0.140 4.140 23 C -0.228 4.228 24 S 0.172 5.828 25 N -0.646 5.646 26 H 0.405 0.595 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.401 -18.009 5.697 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.014 3.986 3 C -0.212 4.212 4 C 0.039 3.961 5 N -0.226 5.226 6 C -0.062 4.062 7 C 0.048 3.952 8 C -0.188 4.188 9 C -0.192 4.192 10 C -0.543 4.543 11 H 0.089 0.911 12 C -0.129 4.129 13 N -0.538 5.538 14 Si 0.719 3.281 15 H -0.216 1.216 16 H -0.238 1.238 17 H -0.175 1.175 18 N -0.252 5.252 19 C 0.194 3.806 20 C -0.314 4.314 21 C -0.081 4.081 22 C -0.171 4.171 23 C -0.366 4.366 24 S 0.437 5.563 25 N -0.269 5.269 26 H 0.240 0.760 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.165 0.835 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.182 0.818 41 H 0.167 0.833 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.794 -17.026 5.608 27.454 hybrid contribution 0.755 0.085 -0.708 1.038 sum -20.039 -16.941 4.901 26.694 Atomic orbital electron populations 1.20862 0.87969 1.04198 1.03741 1.20154 0.94158 0.84894 0.99436 1.21978 0.92888 0.97101 1.09253 1.21009 0.91086 0.86810 0.97218 1.73303 1.10398 1.22959 1.15892 1.22042 0.84804 1.00527 0.98847 1.18427 0.95341 0.91037 0.90411 1.22146 0.97303 0.99679 0.99622 1.22180 0.98938 0.98851 0.99249 1.20901 0.88429 1.35401 1.09529 0.91065 1.24949 0.94673 0.96499 0.96733 1.69970 1.08540 1.42781 1.32528 0.87286 0.79779 0.81779 0.79238 1.21552 1.23841 1.17511 1.69504 1.35454 0.97329 1.22878 1.19518 0.79028 0.92020 0.90065 1.22663 0.97131 0.93380 1.18222 1.21036 0.93965 0.98049 0.95087 1.20168 1.01159 0.91844 1.03969 1.25176 0.96749 1.04782 1.09886 1.82690 1.08287 0.95080 1.70218 1.42127 1.05566 1.08560 1.70649 0.75966 0.89882 0.90983 0.89164 0.83545 0.91722 0.92562 0.96043 0.93440 0.94366 0.93724 0.95266 0.94038 0.92935 0.81821 0.83299 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.14 36.01 0.37 -0.27 16 2 C 0.12 1.25 6.85 -81.58 -0.56 0.69 16 3 C -0.18 -2.63 9.92 -37.29 -0.37 -3.00 16 4 C 0.32 6.03 7.60 -156.04 -1.19 4.85 16 5 N -0.51 -11.16 9.28 -59.21 -0.55 -11.71 16 6 C 0.07 1.63 5.16 -4.04 -0.02 1.61 16 7 C 0.05 1.29 0.57 -155.66 -0.09 1.20 16 8 C -0.13 -3.31 7.55 37.16 0.28 -3.03 16 9 C -0.14 -3.41 7.54 37.16 0.28 -3.13 16 10 C -0.50 -15.09 8.62 -34.44 -0.30 -15.39 16 11 H 0.07 2.28 7.99 -52.49 -0.42 1.87 16 12 C 0.07 2.21 5.32 -17.82 -0.09 2.11 16 13 N -0.90 -28.77 13.96 55.43 0.77 -27.99 16 14 Si 0.89 23.76 22.79 -169.99 -3.87 19.89 16 15 H -0.29 -7.65 7.10 56.52 0.40 -7.24 16 16 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 17 H -0.25 -6.39 4.65 56.52 0.26 -6.13 16 18 N -0.53 -9.56 8.40 -9.21 -0.08 -9.64 16 19 C 0.47 6.50 7.65 -154.79 -1.18 5.31 16 20 C -0.19 -2.30 6.45 -36.76 -0.24 -2.53 16 21 C -0.05 -0.58 9.96 -40.42 -0.40 -0.98 16 22 C -0.14 -1.34 10.15 -41.39 -0.42 -1.76 16 23 C -0.23 -1.75 10.92 29.15 0.32 -1.44 16 24 S 0.17 1.29 22.07 -107.50 -2.37 -1.08 16 25 N -0.65 -6.71 5.34 -7.12 -0.04 -6.75 16 26 H 0.41 2.80 7.73 -40.82 -0.32 2.49 16 27 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.15 1.91 8.06 -52.48 -0.42 1.48 16 31 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.06 1.39 6.70 -51.93 -0.35 1.04 16 33 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 34 H 0.05 1.24 4.30 -51.93 -0.22 1.02 16 35 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.75 2.25 -51.93 -0.12 0.63 16 38 H 0.04 0.98 7.60 -51.93 -0.39 0.58 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 40 H 0.16 2.35 8.00 -52.49 -0.42 1.93 16 41 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -36.73 348.80 -10.22 -46.94 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.72 Total: 0.84 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -3.61 Total: -15.76 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.11 Total: -56.09 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -3.87 Total: 19.89 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.37 Total: -1.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.73 -10.22 -46.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.176 kcal (2) G-P(sol) polarization free energy of solvation -36.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds