Wall clock time and date at job start Tue Mar 31 2020 10:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34750 * 120.32542 * 2 1 4 4 C 1.46962 * 118.44729 * 179.97438 * 3 2 1 5 5 N 1.32018 * 120.52571 * 180.02562 * 4 3 2 6 6 C 1.46495 * 120.00223 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47443 * 119.99603 * 6 5 4 8 8 C 1.53001 * 109.46832 * 299.99909 * 7 6 5 9 9 C 1.53000 * 109.47242 * 59.99699 * 7 6 5 10 10 C 1.50695 * 109.47024 * 179.97438 * 7 6 5 11 11 H 1.07998 * 120.00563 * 1.34981 * 10 7 6 12 12 C 1.37881 * 119.99983 * 181.34915 * 10 7 6 13 13 N 1.31511 * 120.00186 * 193.97494 * 12 10 7 14 14 Si 1.86798 * 119.99731 * 13.97780 * 12 10 7 15 15 H 1.48498 * 109.47305 * 84.55566 * 14 12 10 16 16 H 1.48504 * 109.46923 * 204.55575 * 14 12 10 17 17 H 1.48499 * 109.47355 * 324.55378 * 14 12 10 18 18 N 1.34861 * 118.95326 * 359.97438 * 4 3 2 19 19 C 1.31730 * 120.52431 * 0.02562 * 18 4 3 20 20 C 1.46728 * 119.15059 * 179.97438 * 19 18 4 21 21 C 1.36560 * 125.45356 * 359.97438 * 20 19 18 22 22 C 1.37611 * 113.28788 * 179.97438 * 21 20 19 23 23 C 1.33728 * 115.08737 * 359.97438 * 22 21 20 24 24 S 1.70612 * 110.96241 * 0.02562 * 23 22 21 25 25 N 1.36599 * 121.69936 * 0.27021 * 19 18 4 26 26 H 0.97004 * 119.48185 * 179.70606 * 25 19 18 27 27 H 1.09007 * 109.47071 * 90.00583 * 1 2 3 28 28 H 1.09002 * 109.46906 * 210.00014 * 1 2 3 29 29 H 1.08996 * 109.47436 * 330.00254 * 1 2 3 30 30 H 1.08003 * 120.77478 * 359.95574 * 3 2 1 31 31 H 1.09007 * 109.46692 * 239.99626 * 6 5 4 32 32 H 1.09003 * 109.47146 * 359.97438 * 6 5 4 33 33 H 1.08999 * 109.47243 * 69.32787 * 8 7 6 34 34 H 1.09001 * 109.46695 * 189.33075 * 8 7 6 35 35 H 1.09003 * 109.47047 * 309.32354 * 8 7 6 36 36 H 1.09007 * 109.47012 * 59.99904 * 9 7 6 37 37 H 1.08995 * 109.47593 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.47317 * 300.00123 * 9 7 6 39 39 H 0.97000 * 120.00309 * 180.02562 * 13 12 10 40 40 H 1.07995 * 123.36055 * 359.97438 * 21 20 19 41 41 H 1.07992 * 122.45908 * 179.97438 * 22 21 20 42 42 H 1.07990 * 124.51761 * 180.26726 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.1631 0.0000 4 6 3.6562 1.1150 0.0006 5 7 4.3637 2.2296 0.0011 6 6 5.8273 2.1682 0.0022 7 6 6.3682 2.8673 -1.2466 8 6 5.8294 2.1679 -2.4962 9 6 5.9190 4.3299 -1.2472 10 6 7.8738 2.8047 -1.2450 11 1 8.3924 2.2963 -0.4457 12 6 8.5895 3.3964 -2.2642 13 7 9.8651 3.1170 -2.4203 14 14 7.7472 4.5951 -3.4231 15 1 7.7446 5.9508 -2.8170 16 1 8.4791 4.6318 -4.7148 17 1 6.3485 4.1557 -3.6590 18 7 4.2700 -0.0859 0.0016 19 6 3.5642 -1.1981 0.0016 20 6 4.2631 -2.4882 0.0022 21 6 5.6185 -2.6547 0.0022 22 6 6.0044 -3.9756 0.0034 23 6 5.0008 -4.8595 0.0048 24 16 3.4898 -4.0673 0.0040 25 7 2.1983 -1.1814 -0.0049 26 1 1.7106 -2.0199 -0.0091 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6654 2.1087 -0.0007 31 1 6.2111 2.6665 0.8926 32 1 6.1473 1.1262 0.0030 33 1 4.7592 2.3549 -2.5843 34 1 6.3398 2.5554 -3.3780 35 1 6.0055 1.0952 -2.4166 36 1 6.3028 4.8282 -0.3569 37 1 6.3039 4.8279 -2.1371 38 1 4.8300 4.3756 -1.2481 39 1 10.3687 3.5336 -3.1371 40 1 6.3180 -1.8319 0.0015 41 1 7.0416 -4.2765 0.0032 42 1 5.1297 -5.9316 0.0099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413415987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:55 Heat of formation + Delta-G solvation = 87.774231 kcal Electronic energy + Delta-G solvation = -23971.049826 eV Core-core repulsion = 20657.148809 eV Total energy + Delta-G solvation = -3313.901016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74810 -38.83706 -38.61299 -36.36350 -34.94842 -33.93151 -32.05008 -30.59108 -28.97384 -28.02774 -27.14595 -26.58492 -26.26746 -23.61076 -22.59566 -20.68962 -20.20785 -19.73020 -18.45357 -18.16092 -18.06113 -17.35278 -16.73845 -16.31341 -16.04438 -15.22440 -15.01488 -14.93668 -14.68838 -14.38098 -14.22627 -14.08765 -13.85864 -13.76222 -13.73845 -13.64721 -13.26470 -13.08704 -12.99956 -12.60326 -12.36599 -12.03665 -11.99593 -11.94828 -11.72718 -11.18468 -11.05695 -11.02138 -10.64178 -10.42837 -9.88933 -9.64955 -9.46930 -8.41670 -8.32292 -6.31015 -0.74210 0.34710 0.48565 0.70373 0.83993 1.30266 1.32155 1.44334 1.65589 1.73368 2.31858 2.86819 3.02655 3.15376 3.36087 3.75488 4.11974 4.20177 4.25010 4.29998 4.41528 4.43421 4.48163 4.52707 4.59956 4.76973 4.78675 4.86337 4.95697 4.97653 5.04084 5.10005 5.12530 5.17543 5.18891 5.21989 5.25655 5.37821 5.50599 5.62992 5.76348 5.80130 6.17181 6.34744 6.70942 7.10101 7.25326 7.34729 8.84704 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.004119 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.053355 B = 6795.543495 C = 8392.909464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.162 3.838 3 C -0.232 4.232 4 C 0.330 3.670 5 N -0.568 5.568 6 C 0.090 3.910 7 C 0.043 3.957 8 C -0.113 4.113 9 C -0.126 4.126 10 C -0.512 4.512 11 H 0.026 0.974 12 C 0.021 3.979 13 N -0.944 5.944 14 Si 0.945 3.055 15 H -0.279 1.279 16 H -0.305 1.305 17 H -0.228 1.228 18 N -0.590 5.590 19 C 0.480 3.520 20 C -0.241 4.241 21 C -0.063 4.063 22 C -0.164 4.164 23 C -0.209 4.209 24 S 0.271 5.729 25 N -0.625 5.625 26 H 0.428 0.572 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.024 0.976 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.265 0.735 40 H 0.123 0.877 41 H 0.158 0.842 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.551 -20.971 4.959 33.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.055 3.945 3 C -0.262 4.262 4 C 0.054 3.946 5 N -0.290 5.290 6 C -0.040 4.040 7 C 0.042 3.958 8 C -0.170 4.170 9 C -0.183 4.183 10 C -0.550 4.550 11 H 0.045 0.955 12 C -0.176 4.176 13 N -0.584 5.584 14 Si 0.775 3.225 15 H -0.206 1.206 16 H -0.234 1.234 17 H -0.153 1.153 18 N -0.318 5.318 19 C 0.208 3.792 20 C -0.360 4.360 21 C -0.099 4.099 22 C -0.195 4.195 23 C -0.348 4.348 24 S 0.538 5.462 25 N -0.247 5.247 26 H 0.267 0.733 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.175 0.825 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.175 0.825 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -26.018 -20.082 4.885 33.228 hybrid contribution 2.166 0.472 -0.355 2.245 sum -23.853 -19.610 4.530 31.210 Atomic orbital electron populations 1.21110 0.83215 1.06511 1.05710 1.20946 0.96571 0.83389 0.93635 1.22010 0.90531 0.99368 1.14251 1.21707 0.93133 0.86677 0.93047 1.73294 1.07420 1.24291 1.24019 1.21492 0.87853 0.98094 0.96595 1.18406 0.92708 0.92527 0.92136 1.21926 0.97862 0.98617 0.98597 1.22053 0.99963 0.97473 0.98820 1.21133 0.90879 1.34694 1.08296 0.95537 1.25744 0.95248 0.98020 0.98606 1.70096 1.10260 1.44237 1.33802 0.86289 0.79760 0.79431 0.77030 1.20601 1.23387 1.15301 1.69504 1.37245 0.98335 1.26669 1.19879 0.80313 0.91965 0.87075 1.22852 0.97584 0.95154 1.20410 1.20955 0.94214 0.98551 0.96224 1.20168 1.02529 0.90802 1.05956 1.25726 0.96548 1.06426 1.06076 1.82270 1.06269 0.90285 1.67401 1.42307 1.04677 1.10040 1.67657 0.73274 0.87745 0.87741 0.87837 0.82485 0.94545 0.95029 0.94654 0.94108 0.95695 0.94186 0.95467 0.92312 0.92611 0.85888 0.82461 0.77587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.14 71.24 0.72 0.10 16 2 C 0.16 2.85 6.85 40.97 0.28 3.13 16 3 C -0.23 -6.45 9.92 23.76 0.24 -6.21 16 4 C 0.33 13.10 7.60 136.61 1.04 14.13 16 5 N -0.57 -26.55 9.28 -341.24 -3.17 -29.71 16 6 C 0.09 4.78 5.16 86.38 0.45 5.23 16 7 C 0.04 2.40 0.57 -52.93 -0.03 2.37 16 8 C -0.11 -5.91 7.55 71.98 0.54 -5.37 16 9 C -0.13 -6.48 7.54 71.98 0.54 -5.94 16 10 C -0.51 -32.79 8.62 25.60 0.22 -32.57 16 11 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 12 C 0.02 1.33 5.32 84.66 0.45 1.78 16 13 N -0.94 -63.18 13.96 21.45 0.30 -62.88 16 14 Si 0.95 49.93 22.79 68.60 1.56 51.49 16 15 H -0.28 -14.30 7.10 99.48 0.71 -13.60 16 16 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 17 H -0.23 -11.26 4.65 99.48 0.46 -10.80 16 18 N -0.59 -22.65 8.40 -183.06 -1.54 -24.19 16 19 C 0.48 13.11 7.65 136.07 1.04 14.15 16 20 C -0.24 -5.49 6.45 24.10 0.16 -5.33 16 21 C -0.06 -1.66 9.96 21.73 0.22 -1.45 16 22 C -0.16 -3.03 10.15 21.10 0.21 -2.82 16 23 C -0.21 -2.43 10.92 66.80 0.73 -1.71 16 24 S 0.27 2.92 22.07 -56.49 -1.25 1.68 16 25 N -0.62 -10.95 5.34 -176.43 -0.94 -11.89 16 26 H 0.43 3.71 7.73 -92.71 -0.72 2.99 16 27 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 30 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.03 1.75 6.70 -2.39 -0.02 1.73 16 33 H 0.03 1.72 7.88 -2.39 -0.02 1.70 16 34 H 0.04 2.14 4.30 -2.39 -0.01 2.13 16 35 H 0.02 1.31 8.12 -2.39 -0.02 1.29 16 36 H 0.04 2.02 8.14 -2.38 -0.02 2.01 16 37 H 0.03 1.38 2.25 -2.39 -0.01 1.38 16 38 H 0.06 2.79 7.60 -2.39 -0.02 2.77 16 39 H 0.26 16.57 8.31 -92.71 -0.77 15.80 16 40 H 0.12 4.17 8.00 -2.91 -0.02 4.14 16 41 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.21 0.89 8.06 -2.92 -0.02 0.87 16 Total: -1.00 -89.50 348.80 1.86 -87.64 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.09 Total: 8.37 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 6.81 Total: -20.51 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -5.35 Total: -128.67 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.56 Total: 51.49 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.25 Total: 1.68 kcal Total: -89.50 1.86 -87.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.414 kcal (2) G-P(sol) polarization free energy of solvation -89.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds