Wall clock time and date at job start Tue Mar 31 2020 12:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 102.99873 * 2 1 4 4 C 1.39418 * 119.84808 * 0.02562 * 3 2 1 5 5 C 1.37626 * 120.69317 * 179.97438 * 4 3 2 6 6 C 1.39627 * 119.84480 * 0.02562 * 5 4 3 7 7 N 1.35964 * 121.32373 * 179.97438 * 6 5 4 8 8 C 1.29620 * 122.18152 * 180.02562 * 7 6 5 9 9 N 1.36176 * 123.36331 * 0.02562 * 8 7 6 10 10 H 0.96999 * 119.96138 * 179.97438 * 9 8 7 11 11 C 1.38340 * 120.08595 * 0.02562 * 9 8 7 12 12 N 1.30735 * 121.43881 * 179.97438 * 11 9 8 13 13 C 1.46503 * 120.00073 * 354.04028 * 12 11 9 14 14 C 1.53001 * 109.47104 * 114.60208 * 13 12 11 15 15 C 1.52999 * 109.47587 * 300.00146 * 14 13 12 16 16 C 1.53007 * 109.46658 * 60.00366 * 14 13 12 17 17 C 1.50697 * 109.47065 * 179.97438 * 14 13 12 18 18 H 1.08006 * 120.00149 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00401 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99240 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00454 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47001 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47310 * 119.99847 * 21 19 17 24 24 H 1.48497 * 109.47350 * 240.00055 * 21 19 17 25 25 C 1.41050 * 119.42241 * 359.97438 * 6 5 4 26 26 C 1.38672 * 119.84401 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47093 * 60.00326 * 1 2 3 28 28 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47310 * 299.99989 * 1 2 3 30 30 H 1.07998 * 119.65210 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.07656 * 180.02562 * 5 4 3 32 32 H 1.07994 * 118.31491 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.47240 * 234.60605 * 13 12 11 34 34 H 1.09003 * 109.47143 * 354.60815 * 13 12 11 35 35 H 1.09006 * 109.46765 * 60.00006 * 15 14 13 36 36 H 1.08997 * 109.47131 * 180.02562 * 15 14 13 37 37 H 1.08993 * 109.46846 * 300.00118 * 15 14 13 38 38 H 1.08998 * 109.47269 * 59.99858 * 16 14 13 39 39 H 1.09005 * 109.46724 * 179.97438 * 16 14 13 40 40 H 1.09001 * 109.46898 * 299.99233 * 16 14 13 41 41 H 0.97003 * 119.99403 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.25568 * 0.04425 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1881 2.6649 0.0005 5 6 1.4779 4.0103 0.0011 6 6 2.8081 4.4346 0.0005 7 7 3.1286 5.7560 0.0005 8 6 4.3574 6.1683 -0.0004 9 7 5.4292 5.3283 -0.0021 10 1 6.3289 5.6909 -0.0031 11 6 5.2367 3.9584 -0.0033 12 7 6.2463 3.1278 -0.0053 13 6 7.6135 3.6371 -0.1381 14 6 8.3895 3.3572 1.1505 15 6 7.6976 4.0535 2.3241 16 6 8.4295 1.8488 1.4041 17 6 9.7960 3.8805 1.0136 18 1 10.1055 4.3648 0.0991 19 6 10.6880 3.7411 2.0557 20 7 10.3112 3.1510 3.1691 21 14 12.4312 4.3905 1.8864 22 1 12.6016 5.0075 0.5464 23 1 12.6839 5.4101 2.9361 24 1 13.3939 3.2706 2.0422 25 6 3.8416 3.4747 0.0000 26 6 3.5375 2.1187 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1581 2.3401 0.0005 31 1 0.6782 4.7362 0.0019 32 1 4.5406 7.2326 -0.0008 33 1 8.1064 3.1411 -0.9742 34 1 7.5850 4.7117 -0.3188 35 1 6.6804 3.6745 2.4229 36 1 8.2507 3.8544 3.2419 37 1 7.6691 5.1280 2.1433 38 1 8.9224 1.3527 0.5680 39 1 8.9827 1.6493 2.3219 40 1 7.4123 1.4699 1.5030 41 1 10.9386 3.0532 3.9024 42 1 4.3287 1.3835 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413417662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:26 Heat of formation + Delta-G solvation = 69.252698 kcal Electronic energy + Delta-G solvation = -23897.869460 eV Core-core repulsion = 20583.165290 eV Total energy + Delta-G solvation = -3314.704170 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73879 -37.95450 -36.64125 -34.69220 -32.49200 -31.72524 -30.60905 -29.70577 -28.93846 -25.87803 -25.58135 -25.11570 -24.29950 -23.22962 -21.18431 -19.45883 -18.65193 -18.25353 -17.65695 -16.15168 -15.91101 -15.35196 -15.01718 -14.90592 -14.65497 -14.40234 -14.00567 -13.97175 -13.60279 -13.32874 -12.97589 -12.78584 -12.58868 -12.27418 -12.17929 -11.72158 -11.59328 -11.21707 -11.15307 -10.82532 -10.67882 -10.39915 -10.34769 -10.18103 -10.10641 -9.80501 -9.53518 -9.41173 -9.10046 -8.92227 -8.60298 -8.36677 -7.91367 -7.00511 -5.99784 -4.12260 0.64371 1.02089 1.42111 2.31185 2.41032 2.83521 3.09771 3.24367 3.33270 3.35646 4.10825 4.14574 4.26510 4.39475 4.75430 4.82477 4.82952 4.93794 5.16426 5.25380 5.28177 5.38385 5.45370 5.70226 5.90388 5.95611 5.99548 6.18866 6.31917 6.39112 6.49702 6.60139 6.76492 6.79204 7.03887 7.05924 7.20270 7.30398 7.42358 7.64674 7.70812 8.05560 8.08295 8.20891 8.36355 8.46625 8.89175 9.53664 11.00353 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.003340 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.074800 B = 8381.099751 C = 9499.590516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.113 6.113 3 C -0.112 4.112 4 C -0.105 4.105 5 C -0.096 4.096 6 C 0.141 3.859 7 N -0.557 5.557 8 C 0.390 3.610 9 N -0.677 5.677 10 H 0.420 0.580 11 C 0.373 3.627 12 N -0.522 5.522 13 C 0.061 3.939 14 C 0.075 3.925 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.512 4.512 18 H 0.054 0.946 19 C 0.067 3.933 20 N -0.882 5.882 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.082 4.082 26 C -0.026 4.026 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.193 0.807 33 H 0.076 0.924 34 H 0.020 0.980 35 H 0.008 0.992 36 H 0.084 0.916 37 H 0.014 0.986 38 H 0.021 0.979 39 H 0.077 0.923 40 H 0.019 0.981 41 H 0.259 0.741 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.796 1.157 -6.271 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.129 5.871 3 C -0.225 4.225 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.030 3.970 7 N -0.281 5.281 8 C 0.099 3.901 9 N -0.311 5.311 10 H 0.261 0.739 11 C 0.099 3.901 12 N -0.242 5.242 13 C -0.068 4.068 14 C 0.074 3.926 15 C -0.185 4.185 16 C -0.179 4.179 17 C -0.551 4.551 18 H 0.072 0.928 19 C -0.135 4.135 20 N -0.520 5.520 21 Si 0.719 3.281 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.089 4.089 26 C -0.052 4.052 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.209 0.791 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.103 0.897 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.096 0.904 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.571 -0.581 -6.046 19.539 hybrid contribution 1.430 2.026 -0.028 2.480 sum -17.141 1.446 -6.074 18.243 Atomic orbital electron populations 1.23670 0.95408 1.06935 1.05521 1.85627 1.05585 1.02968 1.92936 1.21563 0.96175 0.96571 1.08178 1.21074 0.98113 0.92662 1.01077 1.20557 0.94422 0.94912 1.01873 1.18597 0.93205 0.88061 0.97100 1.68487 1.17092 1.15657 1.26816 1.24508 0.82544 0.96706 0.86370 1.44314 1.11002 1.06879 1.68946 0.73914 1.20904 0.93682 0.79297 0.96225 1.72779 1.00547 1.31964 1.18947 1.22374 0.86710 0.95731 1.01999 1.18134 0.92616 0.93845 0.87977 1.21790 0.96798 0.96610 1.03289 1.21659 0.97935 0.96476 1.01815 1.21114 0.95443 1.38088 1.00456 0.92797 1.24898 0.98328 0.94989 0.95269 1.69853 1.34749 1.42829 1.04575 0.86567 0.84927 0.78662 0.77983 1.19898 1.21108 1.20991 1.18892 0.89404 0.94119 1.06481 1.20601 0.94544 0.94764 0.95272 0.89840 0.87544 0.89794 0.85531 0.84664 0.79103 0.90547 0.96153 0.97254 0.89744 0.96657 0.96024 0.90442 0.96211 0.93080 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.14 101.05 0.92 -0.11 16 2 S -0.11 -1.29 22.55 -107.50 -2.42 -3.72 16 3 C -0.11 -1.49 6.11 -38.98 -0.24 -1.72 16 4 C -0.10 -1.20 9.33 -39.37 -0.37 -1.56 16 5 C -0.10 -1.19 10.01 -39.29 -0.39 -1.58 16 6 C 0.14 2.07 6.63 -84.45 -0.56 1.51 16 7 N -0.56 -7.62 10.33 -11.97 -0.12 -7.74 16 8 C 0.39 4.55 12.29 -90.06 -1.11 3.45 16 9 N -0.68 -9.55 5.29 -11.63 -0.06 -9.61 16 10 H 0.42 5.65 6.42 -40.82 -0.26 5.39 16 11 C 0.37 6.45 7.49 -153.55 -1.15 5.30 16 12 N -0.52 -10.26 8.49 -58.35 -0.50 -10.76 16 13 C 0.06 1.26 5.12 -4.04 -0.02 1.24 16 14 C 0.08 1.81 0.57 -155.66 -0.09 1.72 16 15 C -0.13 -3.05 8.09 37.16 0.30 -2.75 16 16 C -0.12 -3.03 8.09 37.16 0.30 -2.72 16 17 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 18 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 19 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 20 N -0.88 -24.24 9.35 55.43 0.52 -23.72 16 21 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.08 -1.33 5.90 -104.72 -0.62 -1.95 16 26 C -0.03 -0.41 9.39 -39.15 -0.37 -0.77 16 27 H 0.08 0.51 7.73 -51.92 -0.40 0.11 16 28 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.08 0.53 7.73 -51.92 -0.40 0.13 16 30 H 0.13 1.07 5.81 -52.49 -0.31 0.76 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.02 0.38 5.61 -51.93 -0.29 0.09 16 35 H 0.01 0.20 7.44 -51.93 -0.39 -0.19 16 36 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 2.11 6.07 -51.93 -0.31 1.79 16 40 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.15 2.43 7.75 -52.49 -0.41 2.03 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -30.46 351.17 -11.63 -42.08 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.56 Total: 4.50 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.75 Total: -11.99 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.16 Total: -51.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.42 Total: -3.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.46 -11.63 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413417662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.338 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds