Wall clock time and date at job start Tue Mar 31 2020 12:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 102.99873 * 2 1 4 4 C 1.39418 * 119.84808 * 0.02562 * 3 2 1 5 5 C 1.37626 * 120.69317 * 179.97438 * 4 3 2 6 6 C 1.39627 * 119.84480 * 0.02562 * 5 4 3 7 7 N 1.35964 * 121.32373 * 179.97438 * 6 5 4 8 8 C 1.29620 * 122.18152 * 180.02562 * 7 6 5 9 9 N 1.36176 * 123.36331 * 0.02562 * 8 7 6 10 10 H 0.96999 * 119.96138 * 179.97438 * 9 8 7 11 11 C 1.38340 * 120.08595 * 0.02562 * 9 8 7 12 12 N 1.30735 * 121.43881 * 179.97438 * 11 9 8 13 13 C 1.46503 * 120.00073 * 354.04028 * 12 11 9 14 14 C 1.53001 * 109.47104 * 114.60208 * 13 12 11 15 15 C 1.52999 * 109.47587 * 300.00146 * 14 13 12 16 16 C 1.53007 * 109.46658 * 60.00366 * 14 13 12 17 17 C 1.50697 * 109.47065 * 179.97438 * 14 13 12 18 18 H 1.08006 * 120.00149 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00401 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99240 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00454 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47001 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47310 * 119.99847 * 21 19 17 24 24 H 1.48497 * 109.47350 * 240.00055 * 21 19 17 25 25 C 1.41050 * 119.42241 * 359.97438 * 6 5 4 26 26 C 1.38672 * 119.84401 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47093 * 60.00326 * 1 2 3 28 28 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47310 * 299.99989 * 1 2 3 30 30 H 1.07998 * 119.65210 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.07656 * 180.02562 * 5 4 3 32 32 H 1.07994 * 118.31491 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.47240 * 234.60605 * 13 12 11 34 34 H 1.09003 * 109.47143 * 354.60815 * 13 12 11 35 35 H 1.09006 * 109.46765 * 60.00006 * 15 14 13 36 36 H 1.08997 * 109.47131 * 180.02562 * 15 14 13 37 37 H 1.08993 * 109.46846 * 300.00118 * 15 14 13 38 38 H 1.08998 * 109.47269 * 59.99858 * 16 14 13 39 39 H 1.09005 * 109.46724 * 179.97438 * 16 14 13 40 40 H 1.09001 * 109.46898 * 299.99233 * 16 14 13 41 41 H 0.97003 * 119.99403 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.25568 * 0.04425 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1881 2.6649 0.0005 5 6 1.4779 4.0103 0.0011 6 6 2.8081 4.4346 0.0005 7 7 3.1286 5.7560 0.0005 8 6 4.3574 6.1683 -0.0004 9 7 5.4292 5.3283 -0.0021 10 1 6.3289 5.6909 -0.0031 11 6 5.2367 3.9584 -0.0033 12 7 6.2463 3.1278 -0.0053 13 6 7.6135 3.6371 -0.1381 14 6 8.3895 3.3572 1.1505 15 6 7.6976 4.0535 2.3241 16 6 8.4295 1.8488 1.4041 17 6 9.7960 3.8805 1.0136 18 1 10.1055 4.3648 0.0991 19 6 10.6880 3.7411 2.0557 20 7 10.3112 3.1510 3.1691 21 14 12.4312 4.3905 1.8864 22 1 12.6016 5.0075 0.5464 23 1 12.6839 5.4101 2.9361 24 1 13.3939 3.2706 2.0422 25 6 3.8416 3.4747 0.0000 26 6 3.5375 2.1187 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1581 2.3401 0.0005 31 1 0.6782 4.7362 0.0019 32 1 4.5406 7.2326 -0.0008 33 1 8.1064 3.1411 -0.9742 34 1 7.5850 4.7117 -0.3188 35 1 6.6804 3.6745 2.4229 36 1 8.2507 3.8544 3.2419 37 1 7.6691 5.1280 2.1433 38 1 8.9224 1.3527 0.5680 39 1 8.9827 1.6493 2.3219 40 1 7.4123 1.4699 1.5030 41 1 10.9386 3.0532 3.9024 42 1 4.3287 1.3835 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413417662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:25 Heat of formation + Delta-G solvation = 53.716724 kcal Electronic energy + Delta-G solvation = -23898.543150 eV Core-core repulsion = 20583.165290 eV Total energy + Delta-G solvation = -3315.377861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85488 -39.16508 -38.12772 -36.17513 -33.84126 -33.18443 -31.95419 -30.75924 -29.71328 -27.65030 -27.46407 -26.95573 -25.31787 -24.49187 -22.37344 -20.83685 -20.07841 -19.35231 -18.80957 -17.94754 -17.19594 -16.79923 -16.30969 -16.01353 -15.91272 -15.55158 -15.13702 -14.99880 -14.82409 -14.57702 -14.42086 -14.13860 -13.61672 -13.60552 -13.38750 -13.21240 -13.04428 -12.83494 -12.66438 -12.55402 -12.47181 -12.28207 -12.13895 -11.52520 -11.47032 -11.22589 -10.99293 -10.89809 -10.73566 -10.43736 -10.23485 -9.94971 -9.11784 -8.07938 -7.98896 -6.20927 -0.38347 -0.08154 0.57832 1.27059 1.40150 1.43668 1.53077 1.54277 1.73906 1.97229 2.42871 2.99956 3.01666 3.20600 3.32153 3.75480 3.94169 4.10377 4.23733 4.29905 4.34333 4.35864 4.45954 4.57713 4.62030 4.70573 4.83813 4.87079 4.91852 4.95283 5.07465 5.11358 5.16583 5.26288 5.29674 5.42932 5.47154 5.60980 5.64561 5.71972 6.04453 6.08342 6.22230 6.40769 6.85446 6.99758 7.12179 7.47971 8.96909 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.003340 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.074800 B = 8381.099751 C = 9499.590516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.157 6.157 3 C -0.112 4.112 4 C -0.091 4.091 5 C -0.093 4.093 6 C 0.128 3.872 7 N -0.564 5.564 8 C 0.392 3.608 9 N -0.676 5.676 10 H 0.423 0.577 11 C 0.383 3.617 12 N -0.566 5.566 13 C 0.075 3.925 14 C 0.068 3.932 15 C -0.107 4.107 16 C -0.108 4.108 17 C -0.526 4.526 18 H 0.054 0.946 19 C 0.021 3.979 20 N -0.906 5.906 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.286 1.286 25 C -0.112 4.112 26 C -0.047 4.047 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.245 0.755 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.006 0.994 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.051 0.949 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.357 2.837 -6.956 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.084 5.916 3 C -0.225 4.225 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.017 3.983 7 N -0.287 5.287 8 C 0.102 3.898 9 N -0.310 5.310 10 H 0.264 0.736 11 C 0.109 3.891 12 N -0.289 5.289 13 C -0.055 4.055 14 C 0.067 3.933 15 C -0.165 4.165 16 C -0.166 4.166 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.178 4.178 20 N -0.545 5.545 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.212 1.212 25 C -0.120 4.120 26 C -0.073 4.073 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.260 0.740 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.159 1.128 -6.740 22.235 hybrid contribution 1.991 1.471 0.176 2.482 sum -19.168 2.599 -6.564 20.427 Atomic orbital electron populations 1.23813 0.90756 1.08694 1.06939 1.85835 1.10710 1.02280 1.92742 1.21712 0.95658 0.97823 1.07297 1.21490 0.99333 0.91955 0.98751 1.20941 0.94080 0.95861 1.00525 1.18934 0.93840 0.88258 0.97277 1.68552 1.17926 1.14915 1.27257 1.25528 0.81346 0.98313 0.84582 1.44377 1.12016 1.06003 1.68606 0.73566 1.21208 0.93822 0.80518 0.93535 1.72783 1.00054 1.32799 1.23230 1.21994 0.87502 0.96533 0.99453 1.18136 0.92580 0.92698 0.89869 1.21537 0.95988 0.97150 1.01828 1.21499 0.97238 0.97744 1.00080 1.21417 0.96622 1.38020 1.00393 0.92777 1.25610 1.01812 0.95296 0.95050 1.70001 1.35740 1.43662 1.05104 0.85616 0.80546 0.77919 0.78165 1.19110 1.20751 1.21243 1.19043 0.89280 0.94820 1.08810 1.20523 0.95334 0.94377 0.97083 0.88213 0.85663 0.88423 0.81802 0.81975 0.73960 0.92018 0.94550 0.97466 0.92662 0.95579 0.96687 0.92965 0.96231 0.93258 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.14 113.37 1.04 -0.40 16 2 S -0.16 -3.49 22.55 -56.49 -1.27 -4.76 16 3 C -0.11 -2.89 6.11 22.66 0.14 -2.75 16 4 C -0.09 -1.82 9.33 22.41 0.21 -1.61 16 5 C -0.09 -2.03 10.01 22.46 0.22 -1.81 16 6 C 0.13 3.56 6.63 39.53 0.26 3.82 16 7 N -0.56 -14.04 10.33 -191.78 -1.98 -16.02 16 8 C 0.39 8.15 12.29 180.15 2.21 10.36 16 9 N -0.68 -18.32 5.29 -190.70 -1.01 -19.33 16 10 H 0.42 10.85 6.42 -92.71 -0.60 10.26 16 11 C 0.38 13.39 7.49 136.05 1.02 14.41 16 12 N -0.57 -23.05 8.49 -338.52 -2.87 -25.93 16 13 C 0.07 3.18 5.12 86.38 0.44 3.62 16 14 C 0.07 3.36 0.57 -52.93 -0.03 3.33 16 15 C -0.11 -5.24 8.09 71.98 0.58 -4.66 16 16 C -0.11 -5.63 8.09 71.98 0.58 -5.05 16 17 C -0.53 -27.94 8.01 25.60 0.21 -27.74 16 18 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 19 C 0.02 1.15 5.15 84.65 0.44 1.59 16 20 N -0.91 -51.03 9.35 21.45 0.20 -50.83 16 21 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 25 C -0.11 -3.68 5.90 -19.93 -0.12 -3.80 16 26 C -0.05 -1.52 9.39 22.55 0.21 -1.31 16 27 H 0.10 0.80 7.73 -2.39 -0.02 0.78 16 28 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.84 7.73 -2.39 -0.02 0.82 16 30 H 0.16 1.99 5.81 -2.91 -0.02 1.98 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.24 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.04 1.38 5.61 -2.39 -0.01 1.36 16 35 H 0.01 0.31 7.44 -2.38 -0.02 0.29 16 36 H 0.05 3.02 6.07 -2.39 -0.01 3.01 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 2.96 6.07 -2.38 -0.01 2.95 16 40 H 0.02 0.97 7.60 -2.39 -0.02 0.95 16 41 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.12 4.41 7.75 -2.91 -0.02 4.38 16 Total: -1.00 -68.75 351.17 2.96 -65.79 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.45 Total: 18.33 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 7.42 Total: -11.99 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -5.66 Total: -112.10 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.27 Total: -4.76 kcal Total: -68.75 2.96 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413417662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.504 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds