Wall clock time and date at job start Tue Mar 31 2020 11:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39898 * 109.46969 * 2 1 4 4 F 1.39907 * 109.47081 * 240.00162 * 2 1 3 5 5 C 1.50698 * 109.47223 * 120.00171 * 2 1 3 6 6 C 1.38311 * 119.96076 * 269.97992 * 5 2 1 7 7 C 1.38268 * 120.14655 * 180.02562 * 6 5 2 8 8 C 1.38122 * 120.07392 * 359.69961 * 7 6 5 9 9 C 1.38888 * 119.92880 * 0.55054 * 8 7 6 10 10 N 1.39674 * 120.07664 * 179.74644 * 9 8 7 11 11 C 1.46499 * 120.00188 * 359.72628 * 10 9 8 12 12 C 1.50695 * 109.47224 * 179.97438 * 11 10 9 13 13 C 1.38632 * 119.75070 * 269.72789 * 12 11 10 14 14 C 1.37618 * 120.24869 * 179.71980 * 13 12 11 15 15 C 1.40716 * 119.74533 * 0.57455 * 14 13 12 16 16 C 1.41398 * 120.24749 * 179.68186 * 15 14 13 17 17 H 1.07996 * 119.99799 * 204.40194 * 16 15 14 18 18 C 1.39942 * 119.99768 * 24.40153 * 16 15 14 19 19 N 1.30832 * 120.00255 * 17.85197 * 18 16 15 20 20 Si 1.86801 * 120.00107 * 197.84735 * 18 16 15 21 21 H 1.48503 * 109.46675 * 59.99953 * 20 18 16 22 22 H 1.48494 * 109.47466 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46931 * 300.00337 * 20 18 16 24 24 C 1.40717 * 119.51130 * 359.69681 * 15 14 13 25 25 C 1.37617 * 119.74374 * 0.02562 * 24 15 14 26 26 C 1.38080 * 119.96331 * 90.00208 * 5 2 1 27 27 H 1.09001 * 109.47144 * 300.00014 * 1 2 3 28 28 H 1.09004 * 109.47395 * 60.00452 * 1 2 3 29 29 H 1.09010 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.92493 * 0.02562 * 6 5 2 31 31 H 1.08002 * 119.95598 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.03829 * 180.27859 * 8 7 6 33 33 H 0.97005 * 119.99564 * 179.72586 * 10 9 8 34 34 H 1.08997 * 109.47043 * 300.00091 * 11 10 9 35 35 H 1.09000 * 109.46792 * 59.99421 * 11 10 9 36 36 H 1.07998 * 119.87491 * 359.97438 * 13 12 11 37 37 H 1.08006 * 120.12826 * 180.27507 * 14 13 12 38 38 H 0.96992 * 119.99992 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.13302 * 179.97438 * 24 15 14 40 40 H 1.08002 * 119.87807 * 179.97438 * 25 24 15 41 41 H 1.07999 * 120.03905 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0323 -0.7104 1.2304 6 6 2.2630 0.0017 2.3934 7 6 2.7244 -0.6461 3.5244 8 6 2.9506 -2.0084 3.4980 9 6 2.7250 -2.7258 2.3303 10 7 2.9578 -4.1026 2.2985 11 6 3.4462 -4.7907 3.4961 12 6 3.6130 -6.2587 3.1990 13 6 2.5563 -7.1291 3.4170 14 6 2.6955 -8.4707 3.1438 15 6 3.9202 -8.9598 2.6529 16 6 4.0771 -10.3373 2.3750 17 1 5.0615 -10.7814 2.3845 18 6 2.9567 -11.1251 2.0877 19 7 1.8323 -10.5585 1.7324 20 14 3.0668 -12.9858 2.2112 21 1 3.4284 -13.3690 3.5996 22 1 1.7543 -13.5838 1.8580 23 1 4.1054 -13.4835 1.2738 24 6 4.9878 -8.0680 2.4408 25 6 4.8241 -6.7294 2.7155 26 6 2.2622 -2.0715 1.1953 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0822 1.0662 2.4182 31 1 2.9038 -0.0869 4.4308 32 1 3.3067 -2.5146 4.3831 33 1 2.7961 -4.6031 1.4835 34 1 4.4064 -4.3681 3.7918 35 1 2.7283 -4.6636 4.3063 36 1 1.6189 -6.7523 3.7987 37 1 1.8695 -9.1464 3.3101 38 1 1.0559 -11.1046 1.5329 39 1 5.9323 -8.4325 2.0648 40 1 5.6422 -6.0431 2.5540 41 1 2.0819 -2.6270 0.2869 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435884098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:19 Heat of formation + Delta-G solvation = -67.210204 kcal Electronic energy + Delta-G solvation = -24704.186589 eV Core-core repulsion = 20797.431806 eV Total energy + Delta-G solvation = -3906.754783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.08058 -47.09004 -39.45542 -37.84119 -35.58390 -33.79518 -32.67046 -31.04678 -29.80031 -29.41975 -28.62774 -26.40807 -24.47653 -23.38489 -22.31150 -21.13600 -20.75743 -19.94138 -17.94584 -17.52707 -17.43090 -16.42039 -16.11662 -15.90888 -15.40512 -15.19561 -14.33313 -14.25068 -14.04479 -13.84968 -13.67412 -13.50493 -13.39833 -13.29772 -13.04340 -12.76230 -12.60518 -12.42992 -12.14068 -12.06721 -11.85025 -11.73944 -11.43136 -11.19903 -11.09152 -10.77587 -10.72600 -10.50429 -9.94326 -9.74647 -9.51173 -9.26138 -8.95902 -7.62296 -7.50346 -7.21902 -6.90693 -4.50658 1.24010 1.63261 2.54918 2.93915 2.98852 2.99969 3.05771 3.54493 3.77342 3.81842 3.86356 4.04491 4.36267 4.52827 4.57710 4.94164 5.19293 5.21980 5.32024 5.36370 5.52073 5.58065 5.60946 5.62716 5.77274 5.78586 5.95904 6.09979 6.19961 6.27860 6.33975 6.44362 6.54321 6.81764 6.83837 6.93683 7.13483 7.21931 7.46618 7.56163 7.70119 7.91190 7.96114 8.03546 8.15619 8.49530 8.74712 8.82302 10.03261 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.002342 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.128883 B =11952.532125 C =12561.757096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.336 3.664 3 F -0.198 7.198 4 F -0.196 7.196 5 C -0.107 4.107 6 C -0.164 4.164 7 C -0.070 4.070 8 C -0.189 4.189 9 C 0.227 3.773 10 N -0.731 5.731 11 C 0.188 3.812 12 C -0.246 4.246 13 C -0.081 4.081 14 C -0.170 4.170 15 C 0.117 3.883 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.787 5.787 20 Si 0.910 3.090 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.230 4.230 25 C -0.069 4.069 26 C -0.174 4.174 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.402 0.598 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.283 0.717 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 15.913 0.567 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.300 3.700 3 F -0.179 7.179 4 F -0.177 7.177 5 C -0.109 4.109 6 C -0.185 4.185 7 C -0.089 4.089 8 C -0.212 4.212 9 C 0.120 3.880 10 N -0.358 5.358 11 C 0.066 3.934 12 C -0.248 4.248 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.114 3.886 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.412 5.412 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.250 4.250 25 C -0.088 4.088 26 C -0.197 4.197 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.237 0.763 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.544 15.743 0.642 16.149 hybrid contribution 0.033 -1.030 -0.502 1.146 sum -3.511 14.713 0.139 15.127 Atomic orbital electron populations 1.22743 0.90831 1.05768 1.05104 1.19487 0.93559 0.74896 0.82054 1.93000 1.90706 1.37410 1.96764 1.93023 1.90653 1.80955 1.53092 1.19807 1.02543 0.94277 0.94243 1.20515 1.05706 0.99622 0.92643 1.20807 0.96714 0.93773 0.97583 1.20789 1.08300 0.94516 0.97597 1.17887 0.92015 0.84952 0.93128 1.45482 1.71107 1.03642 1.15521 1.19977 0.97072 0.90229 0.86157 1.18921 0.96199 0.92431 1.17254 1.20543 0.95915 0.94056 0.99457 1.21311 0.99419 0.94064 1.04120 1.17668 0.91073 0.92799 0.87040 1.19640 0.94293 0.93417 1.41363 0.90271 1.25959 0.94654 1.01623 0.92092 1.69810 1.02342 1.38539 1.30467 0.86333 0.78496 0.81697 0.80067 1.18691 1.20223 1.18887 1.20977 0.99851 0.92918 1.11248 1.20399 0.95258 0.95072 0.98044 1.20292 1.07526 0.93505 0.98377 0.89137 0.90013 0.89028 0.86102 0.85895 0.85728 0.76257 0.93124 0.93059 0.89465 0.86376 0.90597 0.88903 0.89437 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 9.37 37.16 0.35 -1.24 16 2 C 0.34 3.91 2.33 -27.89 -0.06 3.85 16 3 F -0.20 -2.43 16.20 2.25 0.04 -2.40 16 4 F -0.20 -2.61 16.21 2.25 0.04 -2.57 16 5 C -0.11 -1.35 4.99 -104.65 -0.52 -1.87 16 6 C -0.16 -1.92 9.40 -39.54 -0.37 -2.29 16 7 C -0.07 -0.80 10.04 -39.61 -0.40 -1.20 16 8 C -0.19 -2.46 9.31 -39.38 -0.37 -2.83 16 9 C 0.23 3.26 6.65 -83.79 -0.56 2.70 16 10 N -0.73 -11.31 5.73 -59.81 -0.34 -11.65 16 11 C 0.19 3.06 5.03 -5.20 -0.03 3.04 16 12 C -0.25 -4.93 5.27 -104.33 -0.55 -5.48 16 13 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 14 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 15 C 0.12 2.98 5.58 -106.82 -0.60 2.39 16 16 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 17 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 18 C 0.08 1.82 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.55 10.95 55.55 0.61 -18.94 16 20 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 25 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 26 C -0.17 -2.38 9.25 -39.38 -0.36 -2.74 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.12 1.22 7.60 -52.49 -0.40 0.82 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.52 6.73 -52.48 -0.35 1.17 16 33 H 0.40 6.43 8.48 -40.82 -0.35 6.08 16 34 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.12 3.03 6.16 -52.48 -0.32 2.71 16 38 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 39 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 1.67 7.60 -52.49 -0.40 1.27 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -26.13 354.42 -9.88 -36.02 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.15 Total: 11.55 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -5.38 Total: -30.25 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.27 Total: -30.59 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.97 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.13 -9.88 -36.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435884098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.193 kcal (2) G-P(sol) polarization free energy of solvation -26.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds