Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39898 * 109.46969 * 2 1 4 4 F 1.39907 * 109.47081 * 240.00162 * 2 1 3 5 5 C 1.50698 * 109.47223 * 120.00171 * 2 1 3 6 6 C 1.38311 * 119.96076 * 269.97992 * 5 2 1 7 7 C 1.38268 * 120.14655 * 180.02562 * 6 5 2 8 8 C 1.38122 * 120.07392 * 359.69961 * 7 6 5 9 9 C 1.38888 * 119.92880 * 0.55054 * 8 7 6 10 10 N 1.39674 * 120.07664 * 179.74644 * 9 8 7 11 11 C 1.46499 * 120.00188 * 359.72628 * 10 9 8 12 12 C 1.50695 * 109.47224 * 179.97438 * 11 10 9 13 13 C 1.38632 * 119.75070 * 269.72789 * 12 11 10 14 14 C 1.37618 * 120.24869 * 179.71980 * 13 12 11 15 15 C 1.40716 * 119.74533 * 0.57455 * 14 13 12 16 16 C 1.41398 * 120.24749 * 179.68186 * 15 14 13 17 17 H 1.07996 * 119.99799 * 204.40194 * 16 15 14 18 18 C 1.39942 * 119.99768 * 24.40153 * 16 15 14 19 19 N 1.30832 * 120.00255 * 17.85197 * 18 16 15 20 20 Si 1.86801 * 120.00107 * 197.84735 * 18 16 15 21 21 H 1.48503 * 109.46675 * 59.99953 * 20 18 16 22 22 H 1.48494 * 109.47466 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46931 * 300.00337 * 20 18 16 24 24 C 1.40717 * 119.51130 * 359.69681 * 15 14 13 25 25 C 1.37617 * 119.74374 * 0.02562 * 24 15 14 26 26 C 1.38080 * 119.96331 * 90.00208 * 5 2 1 27 27 H 1.09001 * 109.47144 * 300.00014 * 1 2 3 28 28 H 1.09004 * 109.47395 * 60.00452 * 1 2 3 29 29 H 1.09010 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.92493 * 0.02562 * 6 5 2 31 31 H 1.08002 * 119.95598 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.03829 * 180.27859 * 8 7 6 33 33 H 0.97005 * 119.99564 * 179.72586 * 10 9 8 34 34 H 1.08997 * 109.47043 * 300.00091 * 11 10 9 35 35 H 1.09000 * 109.46792 * 59.99421 * 11 10 9 36 36 H 1.07998 * 119.87491 * 359.97438 * 13 12 11 37 37 H 1.08006 * 120.12826 * 180.27507 * 14 13 12 38 38 H 0.96992 * 119.99992 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.13302 * 179.97438 * 24 15 14 40 40 H 1.08002 * 119.87807 * 179.97438 * 25 24 15 41 41 H 1.07999 * 120.03905 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0323 -0.7104 1.2304 6 6 2.2630 0.0017 2.3934 7 6 2.7244 -0.6461 3.5244 8 6 2.9506 -2.0084 3.4980 9 6 2.7250 -2.7258 2.3303 10 7 2.9578 -4.1026 2.2985 11 6 3.4462 -4.7907 3.4961 12 6 3.6130 -6.2587 3.1990 13 6 2.5563 -7.1291 3.4170 14 6 2.6955 -8.4707 3.1438 15 6 3.9202 -8.9598 2.6529 16 6 4.0771 -10.3373 2.3750 17 1 5.0615 -10.7814 2.3845 18 6 2.9567 -11.1251 2.0877 19 7 1.8323 -10.5585 1.7324 20 14 3.0668 -12.9858 2.2112 21 1 3.4284 -13.3690 3.5996 22 1 1.7543 -13.5838 1.8580 23 1 4.1054 -13.4835 1.2738 24 6 4.9878 -8.0680 2.4408 25 6 4.8241 -6.7294 2.7155 26 6 2.2622 -2.0715 1.1953 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0822 1.0662 2.4182 31 1 2.9038 -0.0869 4.4308 32 1 3.3067 -2.5146 4.3831 33 1 2.7961 -4.6031 1.4835 34 1 4.4064 -4.3681 3.7918 35 1 2.7283 -4.6636 4.3063 36 1 1.6189 -6.7523 3.7987 37 1 1.8695 -9.1464 3.3101 38 1 1.0559 -11.1046 1.5329 39 1 5.9323 -8.4325 2.0648 40 1 5.6422 -6.0431 2.5540 41 1 2.0819 -2.6270 0.2869 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435884098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = -77.470399 kcal Electronic energy + Delta-G solvation = -24704.631505 eV Core-core repulsion = 20797.431806 eV Total energy + Delta-G solvation = -3907.199699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.02364 -48.04670 -40.50428 -39.50577 -36.87937 -35.44725 -33.59525 -32.50988 -31.22798 -30.78960 -29.84930 -27.89721 -25.67190 -24.66789 -23.27641 -22.92147 -22.05381 -21.33435 -19.26190 -18.94265 -18.48281 -17.41533 -17.29163 -17.04497 -16.85862 -16.29346 -15.85676 -15.76949 -15.40879 -15.03886 -14.69599 -14.62458 -14.55390 -14.30296 -14.20355 -14.11699 -13.84849 -13.47454 -13.42203 -13.33297 -13.20971 -12.88742 -12.80659 -12.66044 -12.51300 -12.33083 -12.09889 -11.69604 -11.49658 -11.32486 -11.06863 -10.94605 -9.91239 -9.42050 -9.30731 -8.68945 -8.32075 -6.39283 0.27034 0.65305 0.84828 1.11441 1.36589 1.46475 1.50073 2.17812 2.46412 2.69368 2.82441 2.90192 3.16117 3.50763 3.72376 3.74344 4.04690 4.16064 4.26798 4.32901 4.39021 4.49387 4.55705 4.59068 4.61027 4.67025 4.74940 4.86729 4.97983 5.00667 5.02286 5.12261 5.32733 5.34965 5.41768 5.49448 5.59488 5.66336 5.84830 5.92768 6.06260 6.18701 6.34327 6.45491 6.65993 6.81579 6.89663 6.98865 8.27423 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.002342 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.128883 B =11952.532125 C =12561.757096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.329 3.671 3 F -0.202 7.202 4 F -0.210 7.210 5 C -0.115 4.115 6 C -0.162 4.162 7 C -0.066 4.066 8 C -0.195 4.195 9 C 0.210 3.790 10 N -0.739 5.739 11 C 0.198 3.802 12 C -0.226 4.226 13 C -0.083 4.083 14 C -0.194 4.194 15 C 0.085 3.915 16 C -0.499 4.499 17 H 0.076 0.924 18 C 0.036 3.964 19 N -0.821 5.821 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.247 4.247 25 C -0.070 4.070 26 C -0.186 4.186 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.397 0.603 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.289 0.711 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 17.931 1.412 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.293 3.707 3 F -0.183 7.183 4 F -0.191 7.191 5 C -0.116 4.116 6 C -0.182 4.182 7 C -0.084 4.084 8 C -0.218 4.218 9 C 0.105 3.895 10 N -0.366 5.366 11 C 0.075 3.925 12 C -0.228 4.228 13 C -0.102 4.102 14 C -0.213 4.213 15 C 0.082 3.918 16 C -0.528 4.528 17 H 0.094 0.906 18 C -0.180 4.180 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.267 4.267 25 C -0.089 4.089 26 C -0.209 4.209 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.806 17.803 1.489 18.266 hybrid contribution 0.132 -1.371 -0.747 1.567 sum -3.673 16.432 0.742 16.854 Atomic orbital electron populations 1.22763 0.88295 1.06353 1.06561 1.19810 0.95276 0.74393 0.81205 1.92987 1.90964 1.37639 1.96732 1.92995 1.91010 1.81273 1.53836 1.19992 1.02501 0.93990 0.95135 1.20834 1.04508 1.00571 0.92267 1.21165 0.95357 0.93296 0.98608 1.21018 1.08120 0.95308 0.97335 1.18013 0.93147 0.84326 0.94003 1.45216 1.72302 1.04245 1.14866 1.19856 0.98325 0.87523 0.86778 1.19288 0.94931 0.94461 1.14105 1.20777 0.97271 0.93226 0.98903 1.21279 0.98967 0.95224 1.05835 1.17999 0.92095 0.93574 0.88107 1.19871 0.94888 0.94301 1.43766 0.90625 1.26765 0.93929 1.06161 0.91110 1.69862 1.03082 1.40317 1.31345 0.85263 0.78836 0.75721 0.79998 1.18433 1.19125 1.18410 1.21172 0.99638 0.93995 1.11847 1.20699 0.96499 0.94482 0.97179 1.20331 1.08151 0.94144 0.98227 0.87614 0.88689 0.88867 0.84236 0.82829 0.84832 0.76889 0.91717 0.91912 0.87651 0.88196 0.90016 0.88663 0.86789 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.37 71.98 0.67 -2.04 16 2 C 0.33 7.13 2.33 29.85 0.07 7.20 16 3 F -0.20 -4.59 16.20 44.97 0.73 -3.86 16 4 F -0.21 -5.45 16.21 44.97 0.73 -4.72 16 5 C -0.11 -2.68 4.99 -19.89 -0.10 -2.78 16 6 C -0.16 -3.29 9.40 22.29 0.21 -3.08 16 7 C -0.07 -1.27 10.04 22.25 0.22 -1.05 16 8 C -0.19 -4.52 9.31 22.40 0.21 -4.31 16 9 C 0.21 5.67 6.65 38.21 0.25 5.92 16 10 N -0.74 -21.75 5.73 -343.14 -1.96 -23.71 16 11 C 0.20 5.98 5.03 85.63 0.43 6.41 16 12 C -0.23 -8.78 5.27 -19.68 -0.10 -8.88 16 13 C -0.08 -3.61 9.67 22.22 0.21 -3.39 16 14 C -0.19 -9.88 8.70 22.73 0.20 -9.68 16 15 C 0.08 4.49 5.58 -21.29 -0.12 4.37 16 16 C -0.50 -26.58 9.05 23.46 0.21 -26.37 16 17 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 18 C 0.04 1.78 5.14 85.25 0.44 2.22 16 19 N -0.82 -42.22 10.95 21.83 0.24 -41.98 16 20 Si 0.98 37.52 29.60 68.60 2.03 39.55 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 C -0.25 -11.81 9.80 22.73 0.22 -11.58 16 25 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 26 C -0.19 -4.87 9.25 22.40 0.21 -4.67 16 27 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.14 2.30 7.60 -2.91 -0.02 2.28 16 31 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.13 2.81 6.73 -2.91 -0.02 2.79 16 33 H 0.40 12.43 8.48 -92.70 -0.79 11.65 16 34 H 0.06 1.80 7.90 -2.39 -0.02 1.78 16 35 H 0.06 1.77 7.88 -2.39 -0.02 1.76 16 36 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.10 5.38 6.16 -2.91 -0.02 5.36 16 38 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 39 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.12 3.19 7.60 -2.91 -0.02 3.17 16 Total: -1.00 -57.98 354.42 5.49 -52.49 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.27 Total: 36.62 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 3.46 Total: -54.38 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -1.73 Total: -65.69 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 1.46 Total: -8.58 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -57.98 5.49 -52.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435884098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.984 kcal (2) G-P(sol) polarization free energy of solvation -57.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds