Wall clock time and date at job start Tue Mar 31 2020 12:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46798 * 2 1 4 4 C 1.50692 * 109.47239 * 240.00193 * 2 1 3 5 5 H 1.08004 * 120.00058 * 239.99879 * 4 2 1 6 6 C 1.37879 * 120.00172 * 59.99753 * 4 2 1 7 7 N 1.31506 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99709 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47101 * 60.00163 * 8 6 4 10 10 H 1.48504 * 109.46703 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47283 * 299.99821 * 8 6 4 12 12 C 1.53004 * 109.47191 * 119.99674 * 2 1 3 13 13 N 1.46895 * 109.47035 * 300.00419 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.38170 * 120.02671 * 260.00473 * 15 14 13 17 17 C 1.38243 * 120.05451 * 179.97438 * 16 15 14 18 18 C 1.38296 * 120.10905 * 0.02562 * 17 16 15 19 19 C 1.38118 * 120.05619 * 0.02562 * 18 17 16 20 20 C 1.38705 * 120.02504 * 79.72500 * 15 14 13 21 21 O 1.35896 * 120.06149 * 359.97438 * 20 15 14 22 22 C 1.42899 * 117.00441 * 179.97438 * 21 20 15 23 23 F 1.39897 * 109.46889 * 60.00382 * 22 21 20 24 24 F 1.39894 * 109.47174 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.47038 * 299.99866 * 22 21 20 26 26 H 1.09003 * 109.47221 * 299.99569 * 1 2 3 27 27 H 1.08997 * 109.47170 * 60.00348 * 1 2 3 28 28 H 1.09005 * 109.46721 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47612 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47506 * 300.00323 * 3 2 1 31 31 H 1.09004 * 109.47572 * 59.99937 * 3 2 1 32 32 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.46863 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.46661 * 60.00438 * 12 2 1 35 35 H 1.00899 * 111.00672 * 56.04786 * 13 12 2 36 36 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 37 37 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 38 38 H 1.07995 * 119.97194 * 359.96979 * 16 15 14 39 39 H 1.08000 * 119.94599 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.96707 * 180.02562 * 18 17 16 41 41 H 1.08005 * 120.02379 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5198 -4.0081 10 1 1.8270 -0.4199 -5.2204 11 1 3.8076 -1.1188 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6704 15 6 1.5002 0.0422 4.8772 16 6 2.3196 0.9242 5.5552 17 6 1.8425 1.6013 6.6620 18 6 0.5445 1.3974 7.0937 19 6 -0.2782 0.5160 6.4199 20 6 0.1962 -0.1597 5.3046 21 8 -0.6137 -1.0220 4.6358 22 6 -1.9440 -1.1806 5.1328 23 9 -2.6029 0.0531 5.1037 24 9 -2.6347 -2.0966 4.3323 25 9 -1.8969 -1.6533 6.4487 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4427 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.7089 1.1613 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 0.5438 0.0413 2.4402 36 1 1.6571 -1.7224 3.6870 37 1 3.1108 -0.6953 3.6874 38 1 3.3337 1.0847 5.2203 39 1 2.4846 2.2899 7.1909 40 1 0.1740 1.9279 7.9584 41 1 -1.2916 0.3568 6.7577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459688038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:07 Heat of formation + Delta-G solvation = -173.052169 kcal Electronic energy + Delta-G solvation = -27426.315307 eV Core-core repulsion = 23084.201647 eV Total energy + Delta-G solvation = -4342.113660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.57759 -48.28015 -48.17877 -40.51438 -37.86079 -36.84977 -34.26024 -31.77506 -30.56108 -30.00433 -26.24939 -25.70410 -25.51577 -25.14333 -23.13702 -22.86369 -21.55251 -19.74370 -19.29729 -19.01080 -18.41926 -16.86073 -16.43543 -15.82578 -15.45676 -15.35117 -15.05565 -14.87027 -14.69129 -14.59118 -14.54543 -14.39735 -14.30259 -14.09781 -13.80851 -13.47729 -13.29885 -12.69737 -12.48867 -12.20832 -12.08319 -11.80297 -11.63446 -11.13745 -11.02647 -10.93960 -10.62704 -10.55700 -10.14217 -10.03739 -9.35332 -9.17982 -9.00112 -8.67544 -8.57270 -8.25798 -7.69441 -5.88036 -3.98493 1.07720 1.11094 1.37957 2.68643 3.34827 3.39541 3.41946 3.45494 3.64631 3.86549 4.43585 4.47807 4.54895 4.82375 4.90692 5.09405 5.17181 5.30689 5.37284 5.56526 5.69027 5.93532 5.98003 6.11432 6.29369 6.34745 6.39075 6.46914 6.75088 6.78253 6.92812 7.11162 7.20756 7.41318 7.49427 7.73275 7.79122 7.85492 7.97016 8.24148 8.37564 8.58788 9.02620 9.66239 11.12471 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016876 B = 0.003600 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.793291 B = 7775.297636 C = 8756.820215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.118 4.118 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.075 3.925 13 N -0.679 5.679 14 C 0.097 3.903 15 C -0.072 4.072 16 C -0.068 4.068 17 C -0.137 4.137 18 C -0.087 4.087 19 C -0.191 4.191 20 C 0.106 3.894 21 O -0.305 6.305 22 C 0.603 3.397 23 F -0.165 7.165 24 F -0.131 7.131 25 F -0.169 7.169 26 H 0.009 0.991 27 H 0.083 0.917 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.258 0.742 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.339 0.661 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -0.589 20.743 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 C -0.176 4.176 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.053 4.053 13 N -0.311 5.311 14 C -0.033 4.033 15 C -0.073 4.073 16 C -0.086 4.086 17 C -0.155 4.155 18 C -0.105 4.105 19 C -0.210 4.210 20 C 0.064 3.936 21 O -0.225 6.225 22 C 0.512 3.488 23 F -0.147 7.147 24 F -0.112 7.112 25 F -0.151 7.151 26 H 0.028 0.972 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.159 0.841 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.659 -0.138 20.422 20.595 hybrid contribution -0.662 -1.355 -0.718 1.670 sum -3.321 -1.493 19.704 20.038 Atomic orbital electron populations 1.21830 0.98530 0.98385 1.00202 1.18088 0.92105 0.93074 0.89884 1.21633 0.97734 0.98182 1.00066 1.21063 1.31204 1.11810 0.90468 0.93054 1.24879 0.95059 0.94939 0.98652 1.69824 1.36793 1.22728 1.22982 0.86722 0.79163 0.79758 0.82664 1.20492 1.21384 1.20411 1.22183 0.98940 0.94522 0.89675 1.60740 1.16697 1.53136 1.00536 1.20816 1.00241 0.94500 0.87701 1.19361 0.90007 0.99625 0.98347 1.20990 0.99910 0.93685 0.94042 1.21202 0.95981 1.00739 0.97569 1.20898 0.93613 0.96748 0.99235 1.21455 1.01512 1.01110 0.96897 1.18592 0.90095 0.91911 0.93039 1.86470 1.20226 1.61878 1.53936 1.19370 0.79874 0.75071 0.74446 1.93304 1.81768 1.43646 1.95939 1.93321 1.77508 1.66300 1.74054 1.93280 1.96060 1.88701 1.37057 0.97189 0.89823 0.96203 0.96304 0.90771 0.96144 0.93156 0.92421 0.96746 0.84149 0.94523 0.90138 0.84407 0.85324 0.85297 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.92 37.16 0.29 -2.91 16 2 C 0.07 1.69 0.57 -155.66 -0.09 1.61 16 3 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 4 C -0.51 -13.75 8.01 -34.44 -0.28 -14.02 16 5 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.70 9.35 55.43 0.52 -24.18 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.07 1.58 4.59 -3.82 -0.02 1.57 16 13 N -0.68 -12.48 5.70 -115.06 -0.66 -13.13 16 14 C 0.10 1.45 5.47 -4.97 -0.03 1.43 16 15 C -0.07 -0.97 5.41 -104.47 -0.56 -1.54 16 16 C -0.07 -0.76 9.67 -39.60 -0.38 -1.15 16 17 C -0.14 -1.31 10.04 -39.56 -0.40 -1.71 16 18 C -0.09 -0.84 10.04 -39.60 -0.40 -1.24 16 19 C -0.19 -2.19 8.26 -39.43 -0.33 -2.51 16 20 C 0.11 1.42 6.45 -39.22 -0.25 1.17 16 21 O -0.31 -4.28 9.53 -19.41 -0.19 -4.46 16 22 C 0.60 7.30 3.42 101.05 0.35 7.64 16 23 F -0.16 -1.97 15.58 2.25 0.04 -1.94 16 24 F -0.13 -1.62 17.53 2.25 0.04 -1.58 16 25 F -0.17 -1.85 15.55 2.25 0.04 -1.81 16 26 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 27 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 2.00 6.07 -51.93 -0.32 1.69 16 31 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.34 6.49 6.67 -39.29 -0.26 6.23 16 36 H 0.04 0.57 7.86 -51.93 -0.41 0.16 16 37 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 38 H 0.14 1.34 8.04 -52.49 -0.42 0.92 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 1.35 5.10 -52.48 -0.27 1.08 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -28.10 343.91 -7.15 -35.25 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.22 Total: 3.02 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.88 Total: -12.58 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.14 Total: -37.31 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.19 Total: -4.46 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.10 -7.15 -35.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459688038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.798 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds