Wall clock time and date at job start Tue Mar 31 2020 12:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46798 * 2 1 4 4 C 1.50692 * 109.47239 * 240.00193 * 2 1 3 5 5 H 1.08004 * 120.00058 * 239.99879 * 4 2 1 6 6 C 1.37879 * 120.00172 * 59.99753 * 4 2 1 7 7 N 1.31506 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99709 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47101 * 60.00163 * 8 6 4 10 10 H 1.48504 * 109.46703 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47283 * 299.99821 * 8 6 4 12 12 C 1.53004 * 109.47191 * 119.99674 * 2 1 3 13 13 N 1.46895 * 109.47035 * 300.00419 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.38170 * 120.02671 * 260.00473 * 15 14 13 17 17 C 1.38243 * 120.05451 * 179.97438 * 16 15 14 18 18 C 1.38296 * 120.10905 * 0.02562 * 17 16 15 19 19 C 1.38118 * 120.05619 * 0.02562 * 18 17 16 20 20 C 1.38705 * 120.02504 * 79.72500 * 15 14 13 21 21 O 1.35896 * 120.06149 * 359.97438 * 20 15 14 22 22 C 1.42899 * 117.00441 * 179.97438 * 21 20 15 23 23 F 1.39897 * 109.46889 * 60.00382 * 22 21 20 24 24 F 1.39894 * 109.47174 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.47038 * 299.99866 * 22 21 20 26 26 H 1.09003 * 109.47221 * 299.99569 * 1 2 3 27 27 H 1.08997 * 109.47170 * 60.00348 * 1 2 3 28 28 H 1.09005 * 109.46721 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47612 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47506 * 300.00323 * 3 2 1 31 31 H 1.09004 * 109.47572 * 59.99937 * 3 2 1 32 32 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.46863 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.46661 * 60.00438 * 12 2 1 35 35 H 1.00899 * 111.00672 * 56.04786 * 13 12 2 36 36 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 37 37 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 38 38 H 1.07995 * 119.97194 * 359.96979 * 16 15 14 39 39 H 1.08000 * 119.94599 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.96707 * 180.02562 * 18 17 16 41 41 H 1.08005 * 120.02379 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5198 -4.0081 10 1 1.8270 -0.4199 -5.2204 11 1 3.8076 -1.1188 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6704 15 6 1.5002 0.0422 4.8772 16 6 2.3196 0.9242 5.5552 17 6 1.8425 1.6013 6.6620 18 6 0.5445 1.3974 7.0937 19 6 -0.2782 0.5160 6.4199 20 6 0.1962 -0.1597 5.3046 21 8 -0.6137 -1.0220 4.6358 22 6 -1.9440 -1.1806 5.1328 23 9 -2.6029 0.0531 5.1037 24 9 -2.6347 -2.0966 4.3323 25 9 -1.8969 -1.6533 6.4487 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4427 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.7089 1.1613 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 0.5438 0.0413 2.4402 36 1 1.6571 -1.7224 3.6870 37 1 3.1108 -0.6953 3.6874 38 1 3.3337 1.0847 5.2203 39 1 2.4846 2.2899 7.1909 40 1 0.1740 1.9279 7.9584 41 1 -1.2916 0.3568 6.7577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459688038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:06 Heat of formation + Delta-G solvation = -188.063075 kcal Electronic energy + Delta-G solvation = -27426.966229 eV Core-core repulsion = 23084.201647 eV Total energy + Delta-G solvation = -4342.764582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.51990 -49.23735 -49.10576 -41.43790 -38.89271 -38.44564 -35.80422 -33.40320 -31.67317 -31.19886 -27.52299 -27.33428 -27.20759 -26.86910 -24.64983 -23.75141 -22.55472 -20.65064 -20.35959 -20.23237 -19.93720 -18.00255 -17.68405 -17.39258 -16.69201 -16.43423 -16.31918 -16.01221 -15.84189 -15.69915 -15.53976 -15.41288 -15.36332 -15.22849 -15.13120 -14.72378 -14.30048 -14.24570 -14.02546 -13.87218 -13.25746 -13.05370 -13.04116 -12.80062 -12.61440 -12.54487 -12.36441 -12.10127 -12.06187 -11.93985 -11.31516 -10.96534 -10.61165 -10.33586 -9.96128 -9.55779 -9.17248 -7.95402 -6.12543 0.22255 0.26007 0.44231 1.44806 1.45037 1.52186 1.74481 2.47290 2.60376 2.70090 2.93213 3.26621 3.49679 3.68987 3.70598 3.94217 4.14244 4.34010 4.42700 4.52564 4.56747 4.67569 4.74000 4.86493 4.94720 5.01660 5.13520 5.17412 5.27431 5.30117 5.43880 5.49247 5.53420 5.54277 5.70213 5.76525 5.95165 6.15134 6.22032 6.32291 6.46895 6.57874 6.96200 7.54890 9.02779 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016876 B = 0.003600 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.793291 B = 7775.297636 C = 8756.820215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.059 3.941 3 C -0.103 4.103 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.089 3.911 13 N -0.678 5.678 14 C 0.101 3.899 15 C -0.095 4.095 16 C -0.072 4.072 17 C -0.131 4.131 18 C -0.081 4.081 19 C -0.200 4.200 20 C 0.085 3.915 21 O -0.324 6.324 22 C 0.607 3.393 23 F -0.164 7.164 24 F -0.135 7.135 25 F -0.161 7.161 26 H 0.026 0.974 27 H 0.057 0.943 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.057 0.943 34 H 0.006 0.994 35 H 0.334 0.666 36 H 0.029 0.971 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -0.048 22.508 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.161 4.161 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.040 4.040 13 N -0.310 5.310 14 C -0.028 4.028 15 C -0.096 4.096 16 C -0.091 4.091 17 C -0.148 4.148 18 C -0.099 4.099 19 C -0.218 4.218 20 C 0.043 3.957 21 O -0.245 6.245 22 C 0.517 3.483 23 F -0.146 7.146 24 F -0.116 7.116 25 F -0.143 7.143 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.152 0.848 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.169 0.831 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.047 0.400 22.204 22.302 hybrid contribution -0.856 -1.483 -1.165 2.071 sum -2.903 -1.083 21.039 21.266 Atomic orbital electron populations 1.21657 0.98574 0.97810 0.99669 1.18147 0.92094 0.93109 0.90782 1.21446 0.97250 0.98163 0.99262 1.21389 1.31359 1.11948 0.91847 0.93578 1.25541 0.95309 0.95618 1.01183 1.69961 1.37378 1.23594 1.23336 0.85818 0.78734 0.78711 0.79529 1.20226 1.21122 1.19941 1.21859 0.98673 0.93762 0.89676 1.60686 1.16204 1.53221 1.00853 1.20800 1.00791 0.94172 0.87034 1.19317 0.90688 1.01131 0.98467 1.21251 1.00301 0.93107 0.94394 1.21587 0.96308 1.00247 0.96698 1.21343 0.93381 0.95624 0.99506 1.21658 1.02244 1.01390 0.96548 1.18847 0.90204 0.92640 0.94016 1.86431 1.20887 1.62401 1.54741 1.19262 0.79445 0.75007 0.74607 1.93300 1.81702 1.43623 1.95961 1.93309 1.77578 1.66467 1.74274 1.93290 1.96005 1.88607 1.36409 0.95498 0.92421 0.96715 0.96685 0.93354 0.94942 0.93325 0.92458 0.97578 0.84771 0.95308 0.89034 0.83109 0.82115 0.82128 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 7.92 71.98 0.57 -5.29 16 2 C 0.06 2.92 0.57 -52.93 -0.03 2.89 16 3 C -0.10 -5.10 8.09 71.98 0.58 -4.52 16 4 C -0.53 -28.77 8.01 25.60 0.21 -28.57 16 5 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 6 C 0.02 1.23 5.15 84.66 0.44 1.67 16 7 N -0.90 -51.04 9.35 21.45 0.20 -50.84 16 8 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.09 3.76 4.59 86.31 0.40 4.16 16 13 N -0.68 -24.60 5.70 -517.92 -2.95 -27.55 16 14 C 0.10 2.97 5.47 85.56 0.47 3.44 16 15 C -0.10 -2.45 5.41 -19.77 -0.11 -2.56 16 16 C -0.07 -1.45 9.67 22.25 0.22 -1.24 16 17 C -0.13 -2.04 10.04 22.28 0.22 -1.81 16 18 C -0.08 -1.29 10.04 22.26 0.22 -1.06 16 19 C -0.20 -4.19 8.26 22.37 0.18 -4.00 16 20 C 0.09 2.20 6.45 22.51 0.15 2.35 16 21 O -0.32 -9.05 9.53 -92.38 -0.88 -9.93 16 22 C 0.61 14.47 3.42 113.37 0.39 14.86 16 23 F -0.16 -3.82 15.58 44.97 0.70 -3.12 16 24 F -0.13 -3.34 17.53 44.97 0.79 -2.55 16 25 F -0.16 -3.39 15.55 44.97 0.70 -2.69 16 26 H 0.03 1.18 6.57 -2.39 -0.02 1.17 16 27 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 28 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 2.63 6.07 -2.39 -0.01 2.61 16 31 H 0.03 1.47 7.60 -2.38 -0.02 1.45 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.33 12.70 6.67 -89.69 -0.60 12.10 16 36 H 0.03 0.89 7.86 -2.39 -0.02 0.87 16 37 H 0.09 2.44 8.00 -2.38 -0.02 2.43 16 38 H 0.15 2.55 8.04 -2.91 -0.02 2.53 16 39 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.14 2.59 5.10 -2.91 -0.01 2.58 16 Total: -1.00 -59.98 343.91 4.95 -55.04 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.47 Total: 15.63 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.90 Total: -19.69 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.75 Total: -78.39 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.88 Total: -9.93 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 2.19 Total: -8.36 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -59.98 4.95 -55.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459688038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.026 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds