Wall clock time and date at job start Tue Mar 31 2020 12:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47450 * 2 1 4 4 C 1.50708 * 109.46756 * 240.00336 * 2 1 3 5 5 H 1.07995 * 119.99544 * 240.00101 * 4 2 1 6 6 C 1.37871 * 120.00131 * 60.00103 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47444 * 59.99605 * 8 6 4 10 10 H 1.48505 * 109.47103 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47181 * 299.99503 * 8 6 4 12 12 C 1.52996 * 109.47169 * 120.00311 * 2 1 3 13 13 N 1.46896 * 109.47334 * 299.99738 * 12 2 1 14 14 C 1.46897 * 111.00114 * 179.97438 * 13 12 2 15 15 C 1.50698 * 109.46995 * 179.97438 * 14 13 12 16 16 C 1.33859 * 122.07843 * 95.00386 * 15 14 13 17 17 S 1.76262 * 108.19267 * 179.97438 * 16 15 14 18 18 C 1.76175 * 89.83067 * 359.97438 * 17 16 15 19 19 C 1.47829 * 125.47126 * 179.97438 * 18 17 16 20 20 C 1.39530 * 119.74651 * 0.02672 * 19 18 17 21 21 C 1.38359 * 119.05611 * 179.97438 * 20 19 18 22 22 C 1.38818 * 118.52433 * 0.02562 * 21 20 19 23 23 C 1.38287 * 119.40021 * 0.27745 * 22 21 20 24 24 N 1.31726 * 120.91594 * 359.41824 * 23 22 21 25 25 N 1.30237 * 109.05800 * 0.22876 * 18 17 16 26 26 H 1.09004 * 109.47036 * 299.99855 * 1 2 3 27 27 H 1.09005 * 109.47190 * 59.99800 * 1 2 3 28 28 H 1.08999 * 109.47653 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47247 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47087 * 300.00263 * 3 2 1 31 31 H 1.08997 * 109.47167 * 60.00198 * 3 2 1 32 32 H 0.96994 * 120.00427 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.46858 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47400 * 60.00054 * 12 2 1 35 35 H 1.00893 * 111.00011 * 56.04412 * 13 12 2 36 36 H 1.09002 * 109.47136 * 60.00101 * 14 13 12 37 37 H 1.08997 * 109.47212 * 299.99739 * 14 13 12 38 38 H 1.07995 * 125.90444 * 0.02562 * 16 15 14 39 39 H 1.08000 * 120.47345 * 359.97438 * 20 19 18 40 40 H 1.07994 * 120.74167 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.29626 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.54318 * 179.70439 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8257 -0.4204 -5.2205 11 1 3.8062 -1.1208 -4.0084 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0210 -0.6954 3.6702 15 6 1.5005 0.0419 4.8770 16 6 0.3775 -0.3267 5.5056 17 16 0.1141 0.7772 6.8542 18 6 1.5845 1.6466 6.4229 19 6 2.1232 2.8261 7.1329 20 6 1.4489 3.3327 8.2445 21 6 1.9661 4.4368 8.8986 22 6 3.1412 5.0003 8.4204 23 6 3.7545 4.4509 7.3094 24 7 3.2451 3.3957 6.7076 25 7 2.1177 1.0867 5.3749 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.7081 1.1610 -3.4844 33 1 3.1301 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2492 35 1 0.5440 0.0413 2.4402 36 1 3.1109 -0.6957 3.6872 37 1 1.6571 -1.7227 3.6867 38 1 -0.2569 -1.1573 5.2339 39 1 0.5362 2.8695 8.5894 40 1 1.4667 4.8510 9.7619 41 1 3.5699 5.8629 8.9088 42 1 4.6662 4.8904 6.9325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459705141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:52 Heat of formation + Delta-G solvation = 84.645348 kcal Electronic energy + Delta-G solvation = -22965.282648 eV Core-core repulsion = 19651.245953 eV Total energy + Delta-G solvation = -3314.036695 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.49680 -39.55060 -36.80265 -34.10356 -32.87412 -32.46676 -31.00055 -29.53572 -26.49548 -25.53517 -25.45551 -25.12040 -23.86879 -23.16462 -21.94560 -19.41770 -18.56245 -18.19112 -17.00804 -16.39622 -16.10025 -15.90419 -15.22772 -15.05147 -14.69895 -14.45572 -14.13800 -13.68454 -13.45425 -13.35273 -13.31185 -12.76514 -12.37336 -12.33889 -12.17161 -11.91562 -11.15345 -11.06593 -10.93742 -10.60417 -10.56780 -10.33847 -10.13030 -10.03209 -9.97548 -9.73431 -9.67907 -9.38551 -9.32811 -9.05209 -8.59554 -8.48051 -8.24279 -7.66615 -5.86581 -3.97109 -0.01935 0.92068 1.09130 1.20024 1.52840 2.79537 3.35873 3.40490 3.43208 3.59112 3.64153 4.17748 4.47743 4.50115 4.62348 4.70355 4.75555 4.96198 5.08680 5.16613 5.31824 5.35343 5.38624 5.60156 5.67501 5.78149 5.92722 6.12134 6.29545 6.37564 6.42570 6.76209 6.92977 7.12566 7.21886 7.46186 7.53317 7.59375 7.74725 7.80625 7.83970 7.88457 7.99648 8.26135 8.39959 8.60436 9.04189 9.67575 11.13950 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002588 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.777903 B =10815.132152 C =11564.097588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.076 3.924 13 N -0.677 5.677 14 C 0.128 3.872 15 C 0.083 3.917 16 C -0.235 4.235 17 S 0.085 5.915 18 C 0.101 3.899 19 C 0.199 3.801 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.167 4.167 23 C 0.107 3.893 24 N -0.442 5.442 25 N -0.401 5.401 26 H 0.010 0.990 27 H 0.083 0.917 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.258 0.742 33 H 0.059 0.941 34 H 0.014 0.986 35 H 0.337 0.663 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.181 0.819 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 4.735 25.528 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.052 4.052 13 N -0.309 5.309 14 C -0.004 4.004 15 C -0.051 4.051 16 C -0.375 4.375 17 S 0.340 5.660 18 C -0.176 4.176 19 C 0.059 3.941 20 C -0.176 4.176 21 C -0.097 4.097 22 C -0.188 4.188 23 C -0.052 4.052 24 N -0.151 5.151 25 N -0.114 5.114 26 H 0.029 0.971 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.156 0.844 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.198 0.802 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.757 5.232 25.185 25.734 hybrid contribution -0.446 -1.401 -0.854 1.700 sum -1.202 3.831 24.331 24.660 Atomic orbital electron populations 1.21841 0.98611 0.98298 1.00278 1.18079 0.92028 0.93126 0.89822 1.21631 0.97883 0.98109 1.00037 1.21072 1.31173 1.11809 0.90473 0.93014 1.24883 0.95078 0.94946 0.98669 1.69827 1.36803 1.22768 1.22979 0.86718 0.79214 0.79701 0.82651 1.20505 1.21394 1.20381 1.22188 0.99213 0.94278 0.89494 1.60550 1.16218 1.53727 1.00449 1.20506 1.01119 0.92848 0.85944 1.20336 0.92455 0.93460 0.98818 1.27016 1.03152 1.06631 1.00658 1.84627 1.26418 1.24620 1.30377 1.25383 0.95491 0.99845 0.96853 1.18564 0.91736 0.91950 0.91821 1.21985 1.01261 0.98125 0.96241 1.21484 0.95118 0.94191 0.98925 1.22329 0.96669 1.01553 0.98251 1.22920 0.99152 0.91194 0.91905 1.67778 1.09661 1.08556 1.29150 1.66311 1.30782 1.07259 1.07092 0.97144 0.89798 0.96216 0.96234 0.90816 0.96103 0.93161 0.92260 0.96749 0.84434 0.89469 0.94082 0.80153 0.84586 0.84134 0.84269 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.92 37.16 0.29 -2.91 16 2 C 0.07 1.74 0.57 -155.66 -0.09 1.65 16 3 C -0.12 -3.05 8.09 37.16 0.30 -2.75 16 4 C -0.51 -13.89 8.01 -34.44 -0.28 -14.16 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -25.00 9.35 55.43 0.52 -24.48 16 8 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.08 1.64 4.59 -3.83 -0.02 1.62 16 13 N -0.68 -12.92 5.70 -115.06 -0.66 -13.58 16 14 C 0.13 2.05 6.09 -4.98 -0.03 2.02 16 15 C 0.08 1.27 6.20 -84.41 -0.52 0.74 16 16 C -0.23 -2.87 11.07 29.19 0.32 -2.55 16 17 S 0.09 0.92 22.37 -107.50 -2.40 -1.48 16 18 C 0.10 1.43 7.42 -14.31 -0.11 1.32 16 19 C 0.20 2.56 6.75 -83.04 -0.56 2.00 16 20 C -0.15 -1.40 9.64 -39.06 -0.38 -1.77 16 21 C -0.07 -0.49 10.16 -39.32 -0.40 -0.89 16 22 C -0.17 -1.16 10.11 -39.35 -0.40 -1.56 16 23 C 0.11 1.04 11.17 -17.58 -0.20 0.84 16 24 N -0.44 -6.12 10.26 -9.85 -0.10 -6.22 16 25 N -0.40 -6.76 10.48 -7.56 -0.08 -6.84 16 26 H 0.01 0.22 6.57 -51.93 -0.34 -0.13 16 27 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 2.05 6.07 -51.93 -0.32 1.73 16 31 H 0.02 0.50 7.60 -51.93 -0.39 0.11 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.34 6.30 6.76 -39.30 -0.27 6.03 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.14 0.95 7.29 -52.49 -0.38 0.57 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -32.04 359.42 -10.25 -42.29 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.78 Total: 3.16 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.15 Total: -14.68 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.32 Total: -51.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.40 Total: -1.48 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.04 -10.25 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459705141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.937 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds