Wall clock time and date at job start Tue Mar 31 2020 12:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47450 * 2 1 4 4 C 1.50708 * 109.46756 * 240.00336 * 2 1 3 5 5 H 1.07995 * 119.99544 * 240.00101 * 4 2 1 6 6 C 1.37871 * 120.00131 * 60.00103 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47444 * 59.99605 * 8 6 4 10 10 H 1.48505 * 109.47103 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47181 * 299.99503 * 8 6 4 12 12 C 1.52996 * 109.47169 * 120.00311 * 2 1 3 13 13 N 1.46896 * 109.47334 * 299.99738 * 12 2 1 14 14 C 1.46897 * 111.00114 * 179.97438 * 13 12 2 15 15 C 1.50698 * 109.46995 * 179.97438 * 14 13 12 16 16 C 1.33859 * 122.07843 * 95.00386 * 15 14 13 17 17 S 1.76262 * 108.19267 * 179.97438 * 16 15 14 18 18 C 1.76175 * 89.83067 * 359.97438 * 17 16 15 19 19 C 1.47829 * 125.47126 * 179.97438 * 18 17 16 20 20 C 1.39530 * 119.74651 * 0.02672 * 19 18 17 21 21 C 1.38359 * 119.05611 * 179.97438 * 20 19 18 22 22 C 1.38818 * 118.52433 * 0.02562 * 21 20 19 23 23 C 1.38287 * 119.40021 * 0.27745 * 22 21 20 24 24 N 1.31726 * 120.91594 * 359.41824 * 23 22 21 25 25 N 1.30237 * 109.05800 * 0.22876 * 18 17 16 26 26 H 1.09004 * 109.47036 * 299.99855 * 1 2 3 27 27 H 1.09005 * 109.47190 * 59.99800 * 1 2 3 28 28 H 1.08999 * 109.47653 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47247 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47087 * 300.00263 * 3 2 1 31 31 H 1.08997 * 109.47167 * 60.00198 * 3 2 1 32 32 H 0.96994 * 120.00427 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.46858 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47400 * 60.00054 * 12 2 1 35 35 H 1.00893 * 111.00011 * 56.04412 * 13 12 2 36 36 H 1.09002 * 109.47136 * 60.00101 * 14 13 12 37 37 H 1.08997 * 109.47212 * 299.99739 * 14 13 12 38 38 H 1.07995 * 125.90444 * 0.02562 * 16 15 14 39 39 H 1.08000 * 120.47345 * 359.97438 * 20 19 18 40 40 H 1.07994 * 120.74167 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.29626 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.54318 * 179.70439 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8257 -0.4204 -5.2205 11 1 3.8062 -1.1208 -4.0084 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0210 -0.6954 3.6702 15 6 1.5005 0.0419 4.8770 16 6 0.3775 -0.3267 5.5056 17 16 0.1141 0.7772 6.8542 18 6 1.5845 1.6466 6.4229 19 6 2.1232 2.8261 7.1329 20 6 1.4489 3.3327 8.2445 21 6 1.9661 4.4368 8.8986 22 6 3.1412 5.0003 8.4204 23 6 3.7545 4.4509 7.3094 24 7 3.2451 3.3957 6.7076 25 7 2.1177 1.0867 5.3749 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.7081 1.1610 -3.4844 33 1 3.1301 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2492 35 1 0.5440 0.0413 2.4402 36 1 3.1109 -0.6957 3.6872 37 1 1.6571 -1.7227 3.6867 38 1 -0.2569 -1.1573 5.2339 39 1 0.5362 2.8695 8.5894 40 1 1.4667 4.8510 9.7619 41 1 3.5699 5.8629 8.9088 42 1 4.6662 4.8904 6.9325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459705141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:51 Heat of formation + Delta-G solvation = 64.033764 kcal Electronic energy + Delta-G solvation = -22966.176433 eV Core-core repulsion = 19651.245953 eV Total energy + Delta-G solvation = -3314.930480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27871 -40.49667 -38.56937 -35.69355 -33.74871 -33.36216 -32.66841 -30.64755 -27.73944 -27.52527 -27.24796 -26.47623 -24.76130 -24.48283 -22.88692 -20.49690 -20.25653 -19.24034 -17.90628 -17.78854 -17.14856 -16.91454 -16.72669 -16.22827 -16.13991 -15.65164 -15.37750 -14.99054 -14.58273 -14.30975 -14.19272 -14.07058 -13.97961 -13.83213 -13.59660 -13.06159 -12.94741 -12.84667 -12.59602 -12.47672 -12.18455 -12.11890 -12.06068 -11.33182 -11.07132 -10.96979 -10.79141 -10.66241 -10.61673 -10.44112 -10.34706 -10.26480 -9.37674 -9.15040 -7.96400 -6.13794 -0.85199 0.19292 0.25994 0.44226 0.58153 1.43746 1.44739 1.51669 1.78796 2.46938 2.80122 2.89739 3.25520 3.42582 3.57243 3.83648 3.99106 4.08502 4.13363 4.17676 4.25238 4.47820 4.51433 4.57318 4.64214 4.72754 4.76620 4.85637 4.97936 5.01896 5.15056 5.17606 5.19455 5.27108 5.40312 5.51546 5.69232 5.69435 5.74567 6.11656 6.21246 6.31764 6.47098 6.59948 6.75808 6.95229 7.03918 7.53707 9.01999 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002588 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.777903 B =10815.132152 C =11564.097588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.062 3.938 3 C -0.104 4.104 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.905 5.905 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.091 3.909 13 N -0.686 5.686 14 C 0.133 3.867 15 C 0.055 3.945 16 C -0.233 4.233 17 S 0.164 5.836 18 C 0.078 3.922 19 C 0.159 3.841 20 C -0.150 4.150 21 C -0.066 4.066 22 C -0.150 4.150 23 C 0.085 3.915 24 N -0.496 5.496 25 N -0.455 5.455 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.023 0.977 29 H 0.006 0.994 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.257 0.743 33 H 0.046 0.954 34 H 0.020 0.980 35 H 0.339 0.661 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.208 0.792 39 H 0.156 0.844 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 4.945 28.113 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 C -0.162 4.162 4 C -0.565 4.565 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.203 1.203 12 C -0.037 4.037 13 N -0.319 5.319 14 C 0.002 3.998 15 C -0.078 4.078 16 C -0.374 4.374 17 S 0.419 5.581 18 C -0.198 4.198 19 C 0.020 3.980 20 C -0.173 4.173 21 C -0.091 4.091 22 C -0.171 4.171 23 C -0.073 4.073 24 N -0.206 5.206 25 N -0.169 5.169 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.159 0.841 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.173 0.827 40 H 0.200 0.800 41 H 0.195 0.805 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.974 5.436 27.792 28.387 hybrid contribution -0.073 -1.351 -1.496 2.017 sum -2.047 4.086 26.296 26.690 Atomic orbital electron populations 1.21657 0.97975 0.98347 0.99829 1.18122 0.92559 0.92461 0.90766 1.21464 0.96879 0.98888 0.98969 1.21400 1.31338 1.11990 0.91811 0.93431 1.25569 0.95311 0.95637 1.01285 1.69967 1.37426 1.23665 1.23372 0.85791 0.78570 0.78870 0.79402 1.19790 1.21104 1.20259 1.21838 0.98299 0.94258 0.89331 1.60415 1.16343 1.54342 1.00776 1.20424 1.00203 0.94016 0.85182 1.20174 0.94007 0.94264 0.99396 1.27379 1.02185 1.07182 1.00624 1.84218 1.23404 1.22223 1.28297 1.25857 0.96949 1.00422 0.96557 1.18819 0.92749 0.92717 0.93689 1.22241 1.01483 0.98593 0.94950 1.22020 0.94789 0.92942 0.99398 1.22745 0.96086 1.01668 0.96591 1.23325 1.00046 0.90834 0.93125 1.67645 1.11090 1.10564 1.31323 1.66265 1.32908 1.08678 1.09074 0.95192 0.92531 0.95803 0.97429 0.93149 0.95624 0.93308 0.93522 0.96135 0.84130 0.91147 0.91741 0.77536 0.82687 0.80016 0.80500 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 7.92 71.98 0.57 -5.24 16 2 C 0.06 3.10 0.57 -52.93 -0.03 3.07 16 3 C -0.10 -5.49 8.09 71.98 0.58 -4.91 16 4 C -0.53 -29.19 8.01 25.60 0.21 -28.99 16 5 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 6 C 0.02 1.16 5.15 84.65 0.44 1.60 16 7 N -0.91 -51.92 9.35 21.44 0.20 -51.72 16 8 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 C 0.09 3.96 4.59 86.30 0.40 4.36 16 13 N -0.69 -26.32 5.70 -517.95 -2.95 -29.27 16 14 C 0.13 4.30 6.09 85.56 0.52 4.82 16 15 C 0.06 1.68 6.20 41.66 0.26 1.94 16 16 C -0.23 -5.34 11.07 66.82 0.74 -4.60 16 17 S 0.16 3.20 22.37 -56.49 -1.26 1.94 16 18 C 0.08 2.21 7.42 87.47 0.65 2.86 16 19 C 0.16 4.10 6.75 41.85 0.28 4.38 16 20 C -0.15 -2.43 9.64 22.61 0.22 -2.21 16 21 C -0.07 -0.68 10.16 22.44 0.23 -0.45 16 22 C -0.15 -1.68 10.11 22.42 0.23 -1.45 16 23 C 0.09 1.62 11.17 84.72 0.95 2.57 16 24 N -0.50 -14.21 10.26 -185.07 -1.90 -16.10 16 25 N -0.45 -15.83 10.48 -177.82 -1.86 -17.69 16 26 H 0.03 1.28 6.57 -2.38 -0.02 1.27 16 27 H 0.06 3.05 6.07 -2.38 -0.01 3.04 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 30 H 0.05 2.87 6.07 -2.38 -0.01 2.86 16 31 H 0.02 1.27 7.60 -2.39 -0.02 1.25 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.34 12.51 6.76 -89.70 -0.61 11.91 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 38 H 0.21 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.16 1.72 7.29 -2.91 -0.02 1.70 16 40 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -72.61 359.42 0.90 -71.70 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.43 Total: 17.16 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 6.23 Total: -22.26 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -6.51 Total: -114.79 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.26 Total: 1.94 kcal Total: -72.61 0.90 -71.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459705141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.737 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds