Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 C 1.50701 * 109.47091 * 239.99903 * 2 1 3 5 5 H 1.08000 * 119.99890 * 240.00162 * 4 2 1 6 6 C 1.37878 * 119.99750 * 60.00046 * 4 2 1 7 7 N 1.31507 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99545 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47463 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46673 * 120.00009 * 8 6 4 11 11 H 1.48500 * 109.47041 * 239.99585 * 8 6 4 12 12 C 1.53007 * 109.47277 * 119.99809 * 2 1 3 13 13 N 1.46893 * 109.47169 * 300.00179 * 12 2 1 14 14 C 1.46896 * 111.00009 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47122 * 179.97438 * 14 13 12 16 16 C 1.38291 * 119.97179 * 270.02390 * 15 14 13 17 17 C 1.38246 * 120.11138 * 180.02562 * 16 15 14 18 18 C 1.38169 * 120.05567 * 359.67999 * 17 16 15 19 19 C 1.38709 * 119.93966 * 0.57015 * 18 17 16 20 20 O 1.35905 * 120.05570 * 179.72312 * 19 18 17 21 21 C 1.42901 * 116.99604 * 359.72908 * 20 19 18 22 22 F 1.39904 * 109.47113 * 60.00000 * 21 20 19 23 23 F 1.39901 * 109.46966 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46987 * 299.99856 * 21 20 19 25 25 C 1.38119 * 119.97324 * 90.00132 * 15 14 13 26 26 H 1.09002 * 109.46839 * 299.99900 * 1 2 3 27 27 H 1.08999 * 109.47264 * 60.00006 * 1 2 3 28 28 H 1.08998 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47210 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46888 * 300.00224 * 3 2 1 31 31 H 1.08993 * 109.47055 * 59.99597 * 3 2 1 32 32 H 0.97001 * 119.99575 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46896 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.46754 * 60.00115 * 12 2 1 35 35 H 1.00900 * 111.00007 * 303.95190 * 13 12 2 36 36 H 1.09001 * 109.46921 * 60.00381 * 14 13 12 37 37 H 1.08994 * 109.47356 * 299.99708 * 14 13 12 38 38 H 1.08002 * 119.94189 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.97048 * 179.97438 * 17 16 15 40 40 H 1.07997 * 120.02712 * 180.29728 * 18 17 16 41 41 H 1.08006 * 120.02943 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6038 10 1 1.1659 -1.5867 -4.8160 11 1 3.1465 -0.1875 -4.8165 12 6 2.0401 -0.7212 1.2493 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5004 0.0422 4.8771 16 6 2.2401 1.0715 5.4300 17 6 1.7655 1.7495 6.5374 18 6 0.5473 1.4044 7.0906 19 6 -0.1941 0.3689 6.5409 20 8 -1.3900 0.0238 7.0865 21 6 -1.8201 0.7663 8.2293 22 9 -1.9380 2.1183 7.8896 23 9 -3.0605 0.2831 8.6594 24 9 -0.8825 0.6238 9.2578 25 6 0.2846 -0.3103 5.4297 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7082 1.1607 -3.4844 33 1 3.1301 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2493 35 1 1.8198 0.9436 2.4402 36 1 3.1108 -0.6953 3.6873 37 1 1.6572 -1.7225 3.6869 38 1 3.1905 1.3456 4.9965 39 1 2.3453 2.5527 6.9677 40 1 0.1748 1.9375 7.9527 41 1 -0.2928 -1.1143 4.9976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459706984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -174.212044 kcal Electronic energy + Delta-G solvation = -26360.778503 eV Core-core repulsion = 22018.614547 eV Total energy + Delta-G solvation = -4342.163956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.70720 -48.42936 -48.29907 -40.45017 -38.26046 -36.77563 -34.17622 -31.75553 -30.76591 -29.99025 -26.39440 -25.69400 -25.56317 -25.18321 -23.18572 -22.95946 -21.77964 -19.49881 -19.41826 -19.16932 -18.44668 -16.91503 -16.42654 -15.95896 -15.65664 -15.47414 -15.10083 -15.05204 -14.76596 -14.70167 -14.53381 -14.46376 -14.42531 -14.14704 -13.91430 -13.62800 -13.39381 -12.67851 -12.50829 -12.22156 -12.01073 -11.84389 -11.77250 -11.16215 -11.07875 -10.99261 -10.64987 -10.56325 -10.19384 -10.07296 -9.40127 -9.21531 -8.99933 -8.73340 -8.61635 -8.30361 -7.77505 -5.92259 -4.02797 1.02113 1.13867 1.25284 2.57400 3.29672 3.38209 3.40671 3.42271 3.51843 3.75424 4.42554 4.45735 4.51888 4.78579 4.92447 5.03252 5.13838 5.24320 5.33423 5.58711 5.72313 5.81971 5.89391 6.12702 6.21618 6.28438 6.33823 6.49158 6.69591 6.77684 6.87051 7.05676 7.15075 7.37249 7.44540 7.66990 7.74923 7.81658 7.90316 8.19773 8.33556 8.54433 8.98911 9.62450 11.08283 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.002435 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.455062 B =11496.143726 C =11855.565419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.069 3.931 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.053 0.947 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.075 3.925 13 N -0.681 5.681 14 C 0.093 3.907 15 C -0.035 4.035 16 C -0.130 4.130 17 C -0.080 4.080 18 C -0.196 4.196 19 C 0.099 3.901 20 O -0.309 6.309 21 C 0.604 3.396 22 F -0.165 7.165 23 F -0.134 7.134 24 F -0.167 7.167 25 C -0.101 4.101 26 H 0.020 0.980 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.083 0.917 31 H 0.011 0.989 32 H 0.257 0.743 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.340 0.660 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 1.526 22.465 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.053 4.053 13 N -0.313 5.313 14 C -0.036 4.036 15 C -0.035 4.035 16 C -0.149 4.149 17 C -0.098 4.098 18 C -0.214 4.214 19 C 0.057 3.943 20 O -0.229 6.229 21 C 0.513 3.487 22 F -0.147 7.147 23 F -0.115 7.115 24 F -0.149 7.149 25 C -0.120 4.120 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.271 1.179 22.275 22.421 hybrid contribution 1.114 0.024 -0.535 1.236 sum -1.157 1.203 21.740 21.804 Atomic orbital electron populations 1.21643 0.97354 0.98600 1.00127 1.18097 0.93238 0.91953 0.89874 1.21839 0.97691 0.99197 1.00344 1.21144 1.31087 1.11868 0.90458 0.92923 1.24887 0.95020 0.94968 0.98716 1.69843 1.36769 1.22854 1.22827 0.86605 0.78610 0.79717 0.83426 1.19949 1.21100 1.21183 1.22198 0.95609 0.97922 0.89604 1.60662 1.63575 1.06523 1.00528 1.20934 0.96913 0.97996 0.87775 1.19791 0.92909 0.95301 0.95534 1.21174 1.00802 0.96280 0.96650 1.20885 0.94567 0.98936 0.95449 1.21442 0.97794 0.99137 1.03069 1.18689 0.83244 0.96997 0.95340 1.86432 1.37750 1.57145 1.41598 1.19359 0.75853 0.75363 0.78151 1.93306 1.95749 1.33745 1.91919 1.93303 1.41046 1.88435 1.88708 1.93292 1.65728 1.95275 1.60654 1.20319 0.96360 1.01587 0.93701 0.96089 0.90745 0.96289 0.96201 0.89799 0.97045 0.93228 0.96687 0.92366 0.84106 0.94437 0.90162 0.85351 0.85135 0.85269 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 2 C 0.07 1.63 0.57 -155.65 -0.09 1.54 16 3 C -0.13 -3.08 7.92 37.16 0.29 -2.79 16 4 C -0.51 -13.45 8.01 -34.44 -0.28 -13.73 16 5 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 6 C 0.06 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -24.32 9.35 55.43 0.52 -23.81 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.07 1.50 4.59 -3.82 -0.02 1.48 16 13 N -0.68 -11.55 5.70 -115.06 -0.66 -12.20 16 14 C 0.09 1.26 5.81 -4.98 -0.03 1.23 16 15 C -0.03 -0.43 5.39 -104.64 -0.56 -1.00 16 16 C -0.13 -1.43 9.70 -39.56 -0.38 -1.81 16 17 C -0.08 -0.81 10.04 -39.60 -0.40 -1.20 16 18 C -0.20 -2.13 8.26 -39.43 -0.33 -2.45 16 19 C 0.10 1.21 6.48 -39.22 -0.25 0.95 16 20 O -0.31 -3.65 10.37 -19.44 -0.20 -3.85 16 21 C 0.60 6.05 3.42 101.05 0.35 6.39 16 22 F -0.17 -1.67 15.55 2.25 0.04 -1.64 16 23 F -0.13 -1.28 17.53 2.25 0.04 -1.24 16 24 F -0.17 -1.59 15.58 2.25 0.04 -1.55 16 25 C -0.10 -1.27 9.64 -39.43 -0.38 -1.65 16 26 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 27 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 31 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.34 5.76 6.76 -39.29 -0.27 5.49 16 36 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.24 5.10 -52.49 -0.27 0.97 16 41 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -27.24 345.16 -7.16 -34.40 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.24 Total: 2.75 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.87 Total: -13.96 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.14 Total: -36.01 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.11 Total: -4.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.24 -7.16 -34.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459706984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.817 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds