Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 C 1.50701 * 109.47091 * 239.99903 * 2 1 3 5 5 H 1.08000 * 119.99890 * 240.00162 * 4 2 1 6 6 C 1.37878 * 119.99750 * 60.00046 * 4 2 1 7 7 N 1.31507 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99545 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47463 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46673 * 120.00009 * 8 6 4 11 11 H 1.48500 * 109.47041 * 239.99585 * 8 6 4 12 12 C 1.53007 * 109.47277 * 119.99809 * 2 1 3 13 13 N 1.46893 * 109.47169 * 300.00179 * 12 2 1 14 14 C 1.46896 * 111.00009 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47122 * 179.97438 * 14 13 12 16 16 C 1.38291 * 119.97179 * 270.02390 * 15 14 13 17 17 C 1.38246 * 120.11138 * 180.02562 * 16 15 14 18 18 C 1.38169 * 120.05567 * 359.67999 * 17 16 15 19 19 C 1.38709 * 119.93966 * 0.57015 * 18 17 16 20 20 O 1.35905 * 120.05570 * 179.72312 * 19 18 17 21 21 C 1.42901 * 116.99604 * 359.72908 * 20 19 18 22 22 F 1.39904 * 109.47113 * 60.00000 * 21 20 19 23 23 F 1.39901 * 109.46966 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46987 * 299.99856 * 21 20 19 25 25 C 1.38119 * 119.97324 * 90.00132 * 15 14 13 26 26 H 1.09002 * 109.46839 * 299.99900 * 1 2 3 27 27 H 1.08999 * 109.47264 * 60.00006 * 1 2 3 28 28 H 1.08998 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47210 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46888 * 300.00224 * 3 2 1 31 31 H 1.08993 * 109.47055 * 59.99597 * 3 2 1 32 32 H 0.97001 * 119.99575 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46896 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.46754 * 60.00115 * 12 2 1 35 35 H 1.00900 * 111.00007 * 303.95190 * 13 12 2 36 36 H 1.09001 * 109.46921 * 60.00381 * 14 13 12 37 37 H 1.08994 * 109.47356 * 299.99708 * 14 13 12 38 38 H 1.08002 * 119.94189 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.97048 * 179.97438 * 17 16 15 40 40 H 1.07997 * 120.02712 * 180.29728 * 18 17 16 41 41 H 1.08006 * 120.02943 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6038 10 1 1.1659 -1.5867 -4.8160 11 1 3.1465 -0.1875 -4.8165 12 6 2.0401 -0.7212 1.2493 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5004 0.0422 4.8771 16 6 2.2401 1.0715 5.4300 17 6 1.7655 1.7495 6.5374 18 6 0.5473 1.4044 7.0906 19 6 -0.1941 0.3689 6.5409 20 8 -1.3900 0.0238 7.0865 21 6 -1.8201 0.7663 8.2293 22 9 -1.9380 2.1183 7.8896 23 9 -3.0605 0.2831 8.6594 24 9 -0.8825 0.6238 9.2578 25 6 0.2846 -0.3103 5.4297 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7082 1.1607 -3.4844 33 1 3.1301 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2493 35 1 1.8198 0.9436 2.4402 36 1 3.1108 -0.6953 3.6873 37 1 1.6572 -1.7225 3.6869 38 1 3.1905 1.3456 4.9965 39 1 2.3453 2.5527 6.9677 40 1 0.1748 1.9375 7.9527 41 1 -0.2928 -1.1143 4.9976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459706984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -188.301384 kcal Electronic energy + Delta-G solvation = -26361.389463 eV Core-core repulsion = 22018.614547 eV Total energy + Delta-G solvation = -4342.774916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.49311 -49.20978 -49.08218 -41.31725 -39.27130 -38.30775 -35.65484 -33.32737 -31.81822 -31.20326 -27.48154 -27.37277 -27.20805 -26.77764 -24.63084 -23.80858 -22.71030 -20.42485 -20.25816 -20.21058 -19.95331 -17.98809 -17.65364 -17.28021 -16.95147 -16.49215 -16.30710 -15.93642 -15.84454 -15.66051 -15.51710 -15.43289 -15.30825 -15.18451 -15.08881 -14.81966 -14.32123 -14.29821 -13.98708 -13.78502 -13.22938 -13.03329 -13.02816 -12.78718 -12.65863 -12.49263 -12.40889 -12.08508 -12.05800 -11.93798 -11.28812 -10.94653 -10.57244 -10.33218 -9.96564 -9.60013 -9.12941 -7.95208 -6.11981 0.14196 0.28113 0.43804 1.42113 1.45834 1.54805 1.76181 2.47105 2.55578 2.72569 2.95219 3.27225 3.53594 3.65471 3.74100 4.00643 4.05981 4.27612 4.33530 4.56625 4.60836 4.74350 4.74581 4.90843 4.95398 5.03416 5.06493 5.20075 5.29180 5.31680 5.37244 5.45059 5.56504 5.57535 5.72386 5.79456 5.92681 6.17367 6.26406 6.36616 6.51016 6.64868 6.98456 7.55888 9.03031 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.002435 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.455062 B =11496.143726 C =11855.565419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.059 3.941 3 C -0.122 4.122 4 C -0.524 4.524 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.090 3.910 13 N -0.685 5.685 14 C 0.097 3.903 15 C -0.045 4.045 16 C -0.131 4.131 17 C -0.076 4.076 18 C -0.197 4.197 19 C 0.086 3.914 20 O -0.321 6.321 21 C 0.608 3.392 22 F -0.165 7.165 23 F -0.131 7.131 24 F -0.163 7.163 25 C -0.115 4.115 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.010 0.990 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.015 0.985 34 H 0.051 0.949 35 H 0.341 0.659 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 1.911 23.819 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.059 3.941 3 C -0.179 4.179 4 C -0.563 4.563 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.039 4.039 13 N -0.317 5.317 14 C -0.032 4.032 15 C -0.046 4.046 16 C -0.149 4.149 17 C -0.093 4.093 18 C -0.216 4.216 19 C 0.044 3.956 20 O -0.242 6.242 21 C 0.518 3.482 22 F -0.147 7.147 23 F -0.113 7.113 24 F -0.145 7.145 25 C -0.135 4.135 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.347 1.559 23.646 23.735 hybrid contribution 0.803 -0.077 -0.878 1.192 sum -0.545 1.482 22.767 22.822 Atomic orbital electron populations 1.21476 0.97947 0.97706 0.99254 1.18147 0.92728 0.92441 0.90801 1.21665 0.97562 0.98776 0.99944 1.21486 1.31023 1.11902 0.91907 0.93522 1.25537 0.95364 0.95662 1.01200 1.69978 1.37466 1.23751 1.23153 0.85733 0.78016 0.78806 0.80386 1.19520 1.21127 1.20939 1.21838 0.95377 0.97221 0.89473 1.60546 1.63924 1.06533 1.00728 1.20918 0.97707 0.97863 0.86673 1.19692 0.93239 0.96173 0.95459 1.21412 1.01227 0.95534 0.96741 1.21244 0.94230 0.99110 0.94757 1.21685 0.98002 0.98615 1.03288 1.18816 0.83589 0.97596 0.95583 1.86401 1.37856 1.57679 1.42240 1.19247 0.75919 0.75204 0.77854 1.93305 1.95756 1.33673 1.91938 1.93309 1.40931 1.88419 1.88615 1.93300 1.65577 1.95246 1.60337 1.20369 0.96757 1.01982 0.94343 0.94873 0.93475 0.97105 0.96130 0.92757 0.94784 0.93404 0.96631 0.93061 0.83983 0.93072 0.90160 0.83668 0.82111 0.84099 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.14 8.09 71.98 0.58 -4.56 16 2 C 0.06 2.79 0.57 -52.92 -0.03 2.76 16 3 C -0.12 -5.57 7.92 71.98 0.57 -5.00 16 4 C -0.52 -27.85 8.01 25.60 0.21 -27.65 16 5 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 6 C 0.02 1.14 5.15 84.66 0.44 1.58 16 7 N -0.90 -50.28 9.35 21.45 0.20 -50.08 16 8 Si 0.94 42.99 29.54 68.60 2.03 45.02 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.09 3.51 4.59 86.31 0.40 3.90 16 13 N -0.69 -22.23 5.70 -517.94 -2.95 -25.18 16 14 C 0.10 2.47 5.81 85.56 0.50 2.96 16 15 C -0.05 -1.04 5.39 -19.88 -0.11 -1.15 16 16 C -0.13 -2.50 9.70 22.28 0.22 -2.29 16 17 C -0.08 -1.28 10.04 22.26 0.22 -1.06 16 18 C -0.20 -3.85 8.26 22.37 0.18 -3.67 16 19 C 0.09 1.99 6.48 22.51 0.15 2.14 16 20 O -0.32 -7.34 10.37 -92.48 -0.96 -8.30 16 21 C 0.61 11.46 3.42 113.37 0.39 11.85 16 22 F -0.16 -3.10 15.55 44.97 0.70 -2.40 16 23 F -0.13 -2.40 17.53 44.97 0.79 -1.61 16 24 F -0.16 -2.83 15.58 44.97 0.70 -2.13 16 25 C -0.12 -2.82 9.64 22.37 0.22 -2.60 16 26 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 27 H 0.05 2.53 6.07 -2.39 -0.01 2.52 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 2.82 6.07 -2.39 -0.01 2.80 16 31 H 0.03 1.36 6.57 -2.39 -0.02 1.34 16 32 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.34 10.88 6.76 -89.69 -0.61 10.27 16 36 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 37 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.14 2.36 5.10 -2.91 -0.01 2.35 16 41 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -57.41 345.16 4.88 -52.53 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.46 Total: 14.91 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.92 Total: -22.77 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.75 Total: -75.26 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.96 Total: -8.30 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 2.19 Total: -6.13 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -57.41 4.88 -52.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459706984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.769 kcal (2) G-P(sol) polarization free energy of solvation -57.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds