Wall clock time and date at job start Tue Mar 31 2020 12:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46838 * 120.00669 * 8 6 4 11 11 H 1.48505 * 109.46977 * 239.99980 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38261 * 119.93815 * 269.72782 * 15 14 13 17 17 C 1.38187 * 120.09343 * 179.76976 * 16 15 14 18 18 C 1.38661 * 119.96994 * 0.50156 * 17 16 15 19 19 O 1.35950 * 120.05961 * 179.72689 * 18 17 16 20 20 C 1.42893 * 117.00219 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47531 * 300.00232 * 20 19 18 22 22 F 1.39898 * 109.47333 * 60.00423 * 20 19 18 23 23 C 1.38910 * 119.87529 * 359.75146 * 18 17 16 24 24 F 1.35092 * 120.04943 * 179.97438 * 23 18 17 25 25 C 1.38254 * 119.93658 * 90.00164 * 15 14 13 26 26 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 28 28 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 31 31 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 32 32 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 34 34 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 35 35 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 36 36 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 37 37 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 38 38 H 1.07996 * 119.95177 * 0.02562 * 16 15 14 39 39 H 1.08003 * 120.00982 * 180.24807 * 17 16 15 40 40 H 1.09010 * 109.47191 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.98567 * 359.95112 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.2417 1.0682 5.4331 17 6 1.7643 1.7490 6.5367 18 6 0.5446 1.3962 7.0941 19 8 0.0758 2.0611 8.1833 20 6 0.8915 3.1134 8.7018 21 9 2.1338 2.5957 9.0835 22 9 1.0759 4.0893 7.7164 23 6 -0.1970 0.3617 6.5377 24 9 -1.3854 0.0146 7.0781 25 6 0.2836 -0.3129 5.4297 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 0.7095 1.1616 -3.4845 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2494 35 1 1.8198 0.9437 2.4401 36 1 1.6586 -1.7220 3.6874 37 1 3.1116 -0.6939 3.6870 38 1 3.1935 1.3407 5.0016 39 1 2.3428 2.5529 6.9675 40 1 0.4020 3.5598 9.5675 41 1 -0.2921 -1.1171 4.9958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459728865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:49 Heat of formation + Delta-G solvation = -168.214916 kcal Electronic energy + Delta-G solvation = -26397.152478 eV Core-core repulsion = 22055.248577 eV Total energy + Delta-G solvation = -4341.903901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.73737 -48.93957 -47.72166 -40.13520 -38.21937 -36.72337 -34.03605 -31.52468 -30.86572 -29.90404 -26.94224 -25.57299 -25.29562 -25.07936 -23.28101 -23.12567 -21.47021 -19.44045 -18.69236 -18.42749 -18.30691 -17.01054 -16.78521 -15.99424 -15.94338 -15.87577 -15.38693 -14.69515 -14.60427 -14.31528 -14.18425 -14.15300 -14.01419 -13.93852 -13.76175 -13.23882 -12.97407 -12.67221 -12.52944 -12.15815 -11.89285 -11.76254 -11.73584 -11.18641 -11.10613 -10.99334 -10.64404 -10.56237 -10.19093 -10.06833 -9.39762 -9.16270 -9.06339 -8.64918 -8.51262 -8.29939 -7.76795 -5.91948 -4.02506 0.93781 0.96954 2.12562 3.05869 3.29881 3.31097 3.38463 3.41694 3.88445 3.96184 4.23199 4.42886 4.48332 4.56982 4.78857 5.04878 5.09014 5.21044 5.33697 5.45940 5.62705 5.76207 5.88076 5.96694 6.19121 6.27685 6.33120 6.43659 6.69963 6.76051 6.87389 7.06060 7.15470 7.37463 7.44773 7.67346 7.75242 7.81905 7.90451 8.20070 8.33847 8.54701 8.99205 9.62717 11.08576 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.002527 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.145689 B =11075.540238 C =11376.241145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.075 3.925 13 N -0.681 5.681 14 C 0.095 3.905 15 C -0.063 4.063 16 C -0.087 4.087 17 C -0.163 4.163 18 C 0.063 3.937 19 O -0.316 6.316 20 C 0.412 3.588 21 F -0.199 7.199 22 F -0.196 7.196 23 C 0.086 3.914 24 F -0.131 7.131 25 C -0.099 4.099 26 H 0.020 0.980 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.083 0.917 31 H 0.011 0.989 32 H 0.257 0.743 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.339 0.661 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.183 0.817 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 3.662 23.095 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.053 4.053 13 N -0.313 5.313 14 C -0.034 4.034 15 C -0.064 4.064 16 C -0.106 4.106 17 C -0.181 4.181 18 C 0.019 3.981 19 O -0.234 6.234 20 C 0.322 3.678 21 F -0.180 7.180 22 F -0.178 7.178 23 C 0.067 3.933 24 F -0.110 7.110 25 C -0.118 4.118 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.199 0.801 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.076 3.406 23.039 23.290 hybrid contribution 1.367 -0.052 -0.819 1.594 sum 1.290 3.354 22.221 22.510 Atomic orbital electron populations 1.21645 0.97360 0.98597 1.00134 1.18097 0.93237 0.91959 0.89883 1.21839 0.97679 0.99191 1.00345 1.21143 1.31077 1.11870 0.90457 0.92924 1.24888 0.95021 0.94972 0.98719 1.69845 1.36822 1.22801 1.22825 0.86604 0.78613 0.79708 0.83425 1.19951 1.21109 1.21178 1.22199 0.95609 0.97915 0.89615 1.60687 1.63556 1.06530 1.00570 1.20899 0.96894 0.97935 0.87696 1.19811 0.93704 0.96308 0.96590 1.20976 1.00228 0.94641 0.94742 1.21365 0.94871 1.02711 0.99162 1.18786 0.94942 0.94848 0.89501 1.86653 1.46675 1.46652 1.43383 1.23386 0.78140 0.78006 0.88280 1.93100 1.46433 1.87289 1.91227 1.93117 1.95329 1.63461 1.65917 1.16900 0.83437 0.96850 0.96153 1.91504 1.43059 1.91255 1.85184 1.20967 0.96554 1.00684 0.93596 0.96088 0.90740 0.96285 0.96216 0.89796 0.97050 0.93229 0.96689 0.92356 0.84131 0.90156 0.94487 0.84764 0.84197 0.80064 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 2 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 3 C -0.13 -3.09 7.92 37.16 0.29 -2.80 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 5 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 6 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 8 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.07 1.50 4.59 -3.82 -0.02 1.48 16 13 N -0.68 -11.59 5.70 -115.05 -0.66 -12.25 16 14 C 0.09 1.29 5.81 -4.97 -0.03 1.26 16 15 C -0.06 -0.80 5.39 -104.61 -0.56 -1.36 16 16 C -0.09 -1.01 9.69 -39.59 -0.38 -1.39 16 17 C -0.16 -1.87 8.26 -39.44 -0.33 -2.20 16 18 C 0.06 0.78 6.49 -39.18 -0.25 0.53 16 19 O -0.32 -3.40 10.30 -19.58 -0.20 -3.60 16 20 C 0.41 2.96 5.97 101.05 0.60 3.57 16 21 F -0.20 -1.68 15.58 2.25 0.04 -1.64 16 22 F -0.20 -1.78 15.59 2.25 0.04 -1.74 16 23 C 0.09 1.14 7.31 -39.30 -0.29 0.85 16 24 F -0.13 -1.80 17.11 2.25 0.04 -1.77 16 25 C -0.10 -1.25 9.67 -39.54 -0.38 -1.63 16 26 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 27 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 31 H 0.01 0.23 6.57 -51.93 -0.34 -0.12 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.34 5.79 6.76 -39.29 -0.27 5.53 16 36 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.14 1.45 5.10 -52.48 -0.27 1.18 16 40 H 0.18 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -29.23 344.64 -6.80 -36.03 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.24 Total: 2.53 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.50 Total: -14.84 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.14 Total: -36.11 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.23 -6.80 -36.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459728865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.186 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds