Wall clock time and date at job start Tue Mar 31 2020 12:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46838 * 120.00669 * 8 6 4 11 11 H 1.48505 * 109.46977 * 239.99980 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38261 * 119.93815 * 269.72782 * 15 14 13 17 17 C 1.38187 * 120.09343 * 179.76976 * 16 15 14 18 18 C 1.38661 * 119.96994 * 0.50156 * 17 16 15 19 19 O 1.35950 * 120.05961 * 179.72689 * 18 17 16 20 20 C 1.42893 * 117.00219 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47531 * 300.00232 * 20 19 18 22 22 F 1.39898 * 109.47333 * 60.00423 * 20 19 18 23 23 C 1.38910 * 119.87529 * 359.75146 * 18 17 16 24 24 F 1.35092 * 120.04943 * 179.97438 * 23 18 17 25 25 C 1.38254 * 119.93658 * 90.00164 * 15 14 13 26 26 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 28 28 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 31 31 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 32 32 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 34 34 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 35 35 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 36 36 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 37 37 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 38 38 H 1.07996 * 119.95177 * 0.02562 * 16 15 14 39 39 H 1.08003 * 120.00982 * 180.24807 * 17 16 15 40 40 H 1.09010 * 109.47191 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.98567 * 359.95112 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.2417 1.0682 5.4331 17 6 1.7643 1.7490 6.5367 18 6 0.5446 1.3962 7.0941 19 8 0.0758 2.0611 8.1833 20 6 0.8915 3.1134 8.7018 21 9 2.1338 2.5957 9.0835 22 9 1.0759 4.0893 7.7164 23 6 -0.1970 0.3617 6.5377 24 9 -1.3854 0.0146 7.0781 25 6 0.2836 -0.3129 5.4297 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 0.7095 1.1616 -3.4845 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2494 35 1 1.8198 0.9437 2.4401 36 1 1.6586 -1.7220 3.6874 37 1 3.1116 -0.6939 3.6870 38 1 3.1935 1.3407 5.0016 39 1 2.3428 2.5529 6.9675 40 1 0.4020 3.5598 9.5675 41 1 -0.2921 -1.1171 4.9958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459728865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:48 Heat of formation + Delta-G solvation = -184.534746 kcal Electronic energy + Delta-G solvation = -26397.860159 eV Core-core repulsion = 22055.248577 eV Total energy + Delta-G solvation = -4342.611582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.35258 -49.94341 -48.34376 -41.01190 -39.22278 -38.25989 -35.55079 -33.18556 -31.82671 -31.17609 -27.81878 -27.48080 -27.22087 -26.26356 -24.54068 -24.16172 -22.46070 -20.33368 -20.20749 -19.33210 -18.94266 -18.10648 -17.79455 -17.57530 -16.92619 -16.87321 -16.76085 -16.28462 -15.58673 -15.41164 -15.32645 -14.99787 -14.96378 -14.86942 -14.64816 -14.38437 -14.24438 -14.09963 -13.84822 -13.44964 -13.18984 -13.01604 -12.90043 -12.81488 -12.66240 -12.46663 -12.40501 -12.08434 -12.06164 -12.01376 -11.28523 -10.93926 -10.56945 -10.33097 -10.03209 -9.50462 -9.11274 -7.95075 -6.11855 -0.00874 0.03859 1.42114 1.45844 1.46334 1.54801 2.35828 2.48385 2.49677 3.03055 3.27363 3.42808 3.49965 3.62173 3.65576 3.80425 3.97097 4.15982 4.31885 4.40408 4.57962 4.66358 4.72554 4.78370 4.91172 4.96851 5.01238 5.07087 5.20224 5.31659 5.32481 5.44022 5.46016 5.56705 5.72473 5.79590 5.86227 6.17603 6.26459 6.36761 6.50978 6.64339 6.98695 7.56022 9.03133 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.002527 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.145689 B =11075.540238 C =11376.241145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.059 3.941 3 C -0.121 4.121 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.090 3.910 13 N -0.686 5.686 14 C 0.099 3.901 15 C -0.072 4.072 16 C -0.082 4.082 17 C -0.166 4.166 18 C 0.062 3.938 19 O -0.328 6.328 20 C 0.406 3.594 21 F -0.206 7.206 22 F -0.208 7.208 23 C 0.065 3.935 24 F -0.140 7.140 25 C -0.100 4.100 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.011 0.989 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.015 0.985 34 H 0.053 0.947 35 H 0.340 0.660 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.238 0.762 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 3.895 24.452 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.058 3.942 3 C -0.179 4.179 4 C -0.563 4.563 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.039 4.039 13 N -0.318 5.318 14 C -0.029 4.029 15 C -0.073 4.073 16 C -0.100 4.100 17 C -0.184 4.184 18 C 0.018 3.982 19 O -0.246 6.246 20 C 0.318 3.682 21 F -0.188 7.188 22 F -0.189 7.189 23 C 0.045 3.955 24 F -0.118 7.118 25 C -0.120 4.120 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.253 0.747 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.729 3.639 24.415 24.695 hybrid contribution 1.112 -0.080 -1.153 1.604 sum 1.841 3.559 23.262 23.604 Atomic orbital electron populations 1.21480 0.97917 0.97768 0.99258 1.18149 0.92760 0.92388 0.90854 1.21666 0.97523 0.98845 0.99903 1.21487 1.30989 1.11899 0.91889 0.93482 1.25541 0.95373 0.95665 1.01215 1.69982 1.37540 1.23714 1.23139 0.85733 0.78016 0.78797 0.80388 1.19493 1.21130 1.20983 1.21841 0.95384 0.97277 0.89411 1.60579 1.63900 1.06519 1.00791 1.20889 0.97744 0.97908 0.86364 1.19707 0.93965 0.97022 0.96600 1.21207 1.00668 0.93791 0.94367 1.21526 0.94707 1.03001 0.99180 1.18949 0.94927 0.94544 0.89820 1.86658 1.47798 1.47405 1.42717 1.24320 0.77948 0.76903 0.89052 1.93082 1.47127 1.87412 1.91154 1.93093 1.95385 1.63720 1.66750 1.17082 0.83650 0.97871 0.96894 1.91475 1.43548 1.91436 1.85369 1.21064 0.96686 1.00718 0.93495 0.94854 0.93511 0.96996 0.96185 0.92786 0.94848 0.93421 0.96637 0.92878 0.84082 0.89734 0.93054 0.82929 0.83061 0.74675 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.14 8.09 71.98 0.58 -4.56 16 2 C 0.06 2.78 0.57 -52.93 -0.03 2.75 16 3 C -0.12 -5.58 7.92 71.98 0.57 -5.01 16 4 C -0.52 -27.80 8.01 25.60 0.21 -27.59 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 6 C 0.02 1.12 5.15 84.66 0.44 1.56 16 7 N -0.90 -50.37 9.35 21.45 0.20 -50.17 16 8 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.09 3.48 4.59 86.30 0.40 3.88 16 13 N -0.69 -22.11 5.70 -517.92 -2.95 -25.07 16 14 C 0.10 2.49 5.81 85.55 0.50 2.99 16 15 C -0.07 -1.69 5.39 -19.86 -0.11 -1.80 16 16 C -0.08 -1.72 9.69 22.26 0.22 -1.50 16 17 C -0.17 -3.51 8.26 22.36 0.18 -3.33 16 18 C 0.06 1.46 6.49 22.53 0.15 1.60 16 19 O -0.33 -6.52 10.30 -92.99 -0.96 -7.48 16 20 C 0.41 4.86 5.97 113.37 0.68 5.54 16 21 F -0.21 -3.04 15.58 44.97 0.70 -2.34 16 22 F -0.21 -3.34 15.59 44.97 0.70 -2.64 16 23 C 0.06 1.66 7.31 22.45 0.16 1.82 16 24 F -0.14 -3.80 17.11 44.97 0.77 -3.03 16 25 C -0.10 -2.45 9.67 22.30 0.22 -2.23 16 26 H 0.03 1.48 7.60 -2.39 -0.02 1.46 16 27 H 0.05 2.51 6.07 -2.39 -0.01 2.50 16 28 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 2.82 6.07 -2.39 -0.01 2.80 16 31 H 0.03 1.34 6.57 -2.39 -0.02 1.33 16 32 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.34 10.88 6.76 -89.69 -0.61 10.28 16 36 H 0.08 2.06 8.08 -2.39 -0.02 2.04 16 37 H 0.05 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.15 2.81 5.10 -2.91 -0.01 2.80 16 40 H 0.24 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -62.35 344.64 5.10 -57.25 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.46 Total: 14.29 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.15 Total: -25.88 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -2.75 Total: -75.24 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.96 Total: -7.48 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 2.17 Total: -8.00 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -62.35 5.10 -57.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459728865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.289 kcal (2) G-P(sol) polarization free energy of solvation -62.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds