Wall clock time and date at job start Tue Mar 31 2020 11:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46983 * 2 1 4 4 C 1.38559 * 119.80052 * 90.00271 * 3 2 1 5 5 C 1.37760 * 120.31256 * 180.02562 * 4 3 2 6 6 C 1.39771 * 119.90239 * 359.97438 * 5 4 3 7 7 C 1.47401 * 120.20310 * 179.97438 * 6 5 4 8 8 O 1.21499 * 120.00266 * 180.02562 * 7 6 5 9 9 O 1.34754 * 119.99473 * 0.02562 * 7 6 5 10 10 C 1.45197 * 116.99589 * 179.97438 * 9 7 6 11 11 C 1.40202 * 119.60151 * 0.02562 * 6 5 4 12 12 O 1.35644 * 120.15082 * 180.02562 * 11 6 5 13 13 C 1.42903 * 116.99549 * 179.97438 * 12 11 6 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47069 * 304.99524 * 14 13 12 16 16 C 1.47199 * 109.47256 * 64.99940 * 14 13 12 17 17 N 7.85246 * 120.79265 * 313.98920 * 2 1 3 18 18 C 1.53006 * 109.46846 * 185.00091 * 14 13 12 19 19 C 1.50699 * 109.46678 * 174.99845 * 18 14 13 20 20 H 1.07994 * 120.00629 * 0.02562 * 19 18 14 21 21 C 1.37887 * 119.99470 * 179.97438 * 19 18 14 22 22 N 1.31510 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47464 * 89.99846 * 23 21 19 25 25 H 1.48504 * 109.47105 * 209.99902 * 23 21 19 26 26 H 1.48499 * 109.47186 * 329.99318 * 23 21 19 27 27 C 1.38060 * 119.79876 * 270.27504 * 3 2 1 28 28 H 1.09000 * 109.46733 * 299.99765 * 1 2 3 29 29 H 1.08996 * 109.46892 * 60.00400 * 1 2 3 30 30 H 1.08997 * 109.46521 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47237 * 240.00356 * 2 1 3 32 32 H 1.09003 * 109.47438 * 119.99943 * 2 1 3 33 33 H 1.08005 * 119.84698 * 359.97425 * 4 3 2 34 34 H 1.08000 * 120.05572 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47253 * 60.00958 * 10 9 7 36 36 H 1.09008 * 109.46815 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47484 * 300.00327 * 10 9 7 38 38 H 1.09002 * 109.47382 * 59.99849 * 13 12 11 39 39 H 1.09001 * 109.46938 * 299.99835 * 13 12 11 40 40 H 1.09004 * 109.46746 * 294.99703 * 18 14 13 41 41 H 1.08998 * 109.47205 * 54.99872 * 18 14 13 42 42 H 0.96996 * 120.00103 * 180.02562 * 22 21 19 43 43 H 1.08006 * 119.95173 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0700 1.2024 5 6 2.7206 3.3690 1.2147 6 6 2.9564 4.0362 0.0093 7 6 3.4466 5.4262 0.0147 8 8 3.6499 6.0029 -1.0352 9 8 3.6693 6.0575 1.1843 10 6 4.1521 7.4250 1.1137 11 6 2.7228 3.3756 -1.2051 12 8 2.9483 4.0122 -2.3814 13 6 2.6884 3.2755 -3.5780 14 6 2.9992 4.1512 -4.7935 15 1 2.4353 5.0815 -4.7248 16 6 4.4398 4.4517 -4.8264 17 7 5.5500 4.6849 -4.8532 18 6 2.6038 3.4085 -6.0715 19 6 2.7947 4.3160 -7.2593 20 1 3.1618 5.3217 -7.1171 21 6 2.5018 3.8620 -8.5279 22 7 2.0562 2.6368 -8.7012 23 14 2.7391 4.9866 -10.0003 24 1 4.1171 4.8250 -10.5297 25 1 1.7581 4.6320 -11.0573 26 1 2.5307 6.3969 -9.5847 27 6 2.2556 2.0696 -1.1980 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0797 1.5556 2.1344 34 1 2.8977 3.8712 2.1543 35 1 3.4255 8.0400 0.5828 36 1 4.2898 7.8142 2.1225 37 1 5.1039 7.4473 0.5829 38 1 1.6397 2.9792 -3.6017 39 1 3.3179 2.3860 -3.6009 40 1 3.2299 2.5236 -6.1859 41 1 1.5579 3.1079 -6.0083 42 1 1.8505 2.3173 -9.5936 43 1 2.0696 1.5583 -2.1310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488575649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:13 Heat of formation + Delta-G solvation = -90.073904 kcal Electronic energy + Delta-G solvation = -25794.697582 eV Core-core repulsion = 21998.038870 eV Total energy + Delta-G solvation = -3796.658712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83018 -39.66468 -38.11169 -36.40016 -36.07663 -34.29164 -33.75143 -31.99211 -30.49193 -29.95012 -27.81074 -27.15884 -24.91328 -24.16487 -22.20707 -22.01038 -21.90693 -20.68068 -18.25725 -17.41959 -17.25443 -16.89610 -16.39557 -16.30669 -15.81210 -15.20837 -14.97901 -14.70818 -14.51880 -14.31647 -13.75988 -13.65783 -13.37055 -13.21857 -13.07656 -12.75515 -12.56017 -12.31576 -12.16645 -12.02018 -11.88412 -11.77223 -11.40696 -11.22715 -11.16705 -11.13412 -10.80394 -10.78070 -10.74275 -10.60597 -10.34026 -10.23271 -9.71440 -9.33552 -9.10190 -8.50251 -8.34151 -6.14813 -4.18034 0.60826 1.26617 2.56518 2.67248 3.12319 3.28601 3.35074 3.39739 3.61411 3.65623 3.74652 4.36423 4.38285 4.55324 4.71281 4.76371 4.81239 5.01173 5.04525 5.05824 5.10510 5.12061 5.23512 5.24166 5.30819 5.34953 5.42416 5.44387 5.63705 5.67938 5.70610 5.73169 5.96042 5.99057 6.04065 6.20162 6.33112 6.36606 6.38591 6.55582 7.30043 7.35136 7.41120 7.80747 7.86778 8.15453 8.47154 8.86037 9.47843 10.96186 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003511 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.711280 B = 7973.438134 C = 9946.124276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.005 4.005 4 C -0.178 4.178 5 C -0.022 4.022 6 C -0.175 4.175 7 C 0.503 3.497 8 O -0.479 6.479 9 O -0.363 6.363 10 C 0.038 3.962 11 C 0.206 3.794 12 O -0.281 6.281 13 C 0.058 3.942 14 C 0.013 3.987 15 H 0.114 0.886 16 C 0.245 3.755 17 N -0.466 5.466 18 C 0.035 3.965 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.223 4.223 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.263 0.737 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 -3.019 23.739 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.005 4.005 4 C -0.196 4.196 5 C -0.041 4.041 6 C -0.177 4.177 7 C 0.347 3.653 8 O -0.366 6.366 9 O -0.281 6.281 10 C -0.055 4.055 11 C 0.157 3.843 12 O -0.192 6.192 13 C -0.018 4.018 14 C -0.008 4.008 15 H 0.132 0.868 16 C -0.072 4.072 17 N -0.143 5.143 18 C -0.003 4.003 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.241 4.241 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.366 -2.364 23.170 23.410 hybrid contribution -0.275 0.491 -1.056 1.197 sum -2.641 -1.873 22.114 22.350 Atomic orbital electron populations 1.21742 0.94059 1.02076 1.02588 1.20685 0.96678 0.92107 1.03508 1.19972 0.92381 0.95728 0.92398 1.20849 1.05778 0.95233 0.97758 1.21233 0.92480 0.93827 0.96517 1.18389 1.14602 0.92463 0.92208 1.20911 0.75598 0.86937 0.81852 1.90950 1.46750 1.66582 1.32275 1.86502 1.78196 1.29138 1.34265 1.23216 0.99806 0.79159 1.03355 1.19015 0.89495 0.90147 0.85625 1.86376 1.80051 1.40923 1.11866 1.23236 1.01955 0.95184 0.81387 1.19270 0.84052 1.01810 0.95679 0.86813 1.28770 0.94787 0.92461 0.91192 1.80936 1.13324 1.09542 1.10480 1.19177 0.98101 0.95625 0.87435 1.21088 1.44929 0.99404 0.91117 0.92257 1.24935 0.94721 0.95145 0.99039 1.69926 1.44351 1.15963 1.22742 0.86550 0.78039 0.81117 0.82166 1.20585 1.21033 1.19643 1.21194 1.08824 0.94354 0.99772 0.92420 0.92094 0.92093 0.90347 0.90516 0.85280 0.84123 0.91877 0.88274 0.91938 0.89633 0.91111 0.95261 0.93976 0.92698 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.90 37.16 0.37 -0.63 16 2 C -0.09 -0.67 6.05 -27.88 -0.17 -0.84 16 3 C 0.00 -0.04 5.14 -104.57 -0.54 -0.58 16 4 C -0.18 -1.60 9.67 -39.64 -0.38 -1.98 16 5 C -0.02 -0.23 9.61 -39.18 -0.38 -0.61 16 6 C -0.17 -2.40 5.89 -104.86 -0.62 -3.02 16 7 C 0.50 7.71 7.89 34.46 0.27 7.98 16 8 O -0.48 -9.07 14.95 -26.59 -0.40 -9.47 16 9 O -0.36 -4.51 9.82 -40.64 -0.40 -4.91 16 10 C 0.04 0.37 10.56 101.05 1.07 1.44 16 11 C 0.21 2.99 6.70 -38.67 -0.26 2.73 16 12 O -0.28 -4.78 7.95 -40.51 -0.32 -5.10 16 13 C 0.06 0.91 4.09 37.16 0.15 1.06 16 14 C 0.01 0.26 2.45 -93.40 -0.23 0.03 16 15 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 16 C 0.25 5.45 13.71 -20.80 -0.29 5.17 16 17 N -0.47 -11.20 18.53 42.10 0.78 -10.42 16 18 C 0.03 0.79 4.42 -27.88 -0.12 0.67 16 19 C -0.53 -14.04 8.60 -34.44 -0.30 -14.34 16 20 H 0.06 1.59 7.59 -52.49 -0.40 1.19 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 27 C -0.22 -2.62 8.67 -39.48 -0.34 -2.96 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 1.15 7.61 -52.49 -0.40 0.76 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.12 7.65 -51.93 -0.40 0.72 16 39 H 0.07 1.03 7.67 -51.93 -0.40 0.64 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.14 1.50 6.30 -52.48 -0.33 1.17 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -33.38 376.81 -6.93 -40.30 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -6.13 Total: -3.75 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.86 Total: -4.24 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 1.52 Total: -34.82 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.12 Total: -19.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.38 -6.93 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488575649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.770 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds