Wall clock time and date at job start Tue Mar 31 2020 11:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46983 * 2 1 4 4 C 1.38559 * 119.80052 * 90.00271 * 3 2 1 5 5 C 1.37760 * 120.31256 * 180.02562 * 4 3 2 6 6 C 1.39771 * 119.90239 * 359.97438 * 5 4 3 7 7 C 1.47401 * 120.20310 * 179.97438 * 6 5 4 8 8 O 1.21499 * 120.00266 * 180.02562 * 7 6 5 9 9 O 1.34754 * 119.99473 * 0.02562 * 7 6 5 10 10 C 1.45197 * 116.99589 * 179.97438 * 9 7 6 11 11 C 1.40202 * 119.60151 * 0.02562 * 6 5 4 12 12 O 1.35644 * 120.15082 * 180.02562 * 11 6 5 13 13 C 1.42903 * 116.99549 * 179.97438 * 12 11 6 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47069 * 304.99524 * 14 13 12 16 16 C 1.47199 * 109.47256 * 64.99940 * 14 13 12 17 17 N 7.85246 * 120.79265 * 313.98920 * 2 1 3 18 18 C 1.53006 * 109.46846 * 185.00091 * 14 13 12 19 19 C 1.50699 * 109.46678 * 174.99845 * 18 14 13 20 20 H 1.07994 * 120.00629 * 0.02562 * 19 18 14 21 21 C 1.37887 * 119.99470 * 179.97438 * 19 18 14 22 22 N 1.31510 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47464 * 89.99846 * 23 21 19 25 25 H 1.48504 * 109.47105 * 209.99902 * 23 21 19 26 26 H 1.48499 * 109.47186 * 329.99318 * 23 21 19 27 27 C 1.38060 * 119.79876 * 270.27504 * 3 2 1 28 28 H 1.09000 * 109.46733 * 299.99765 * 1 2 3 29 29 H 1.08996 * 109.46892 * 60.00400 * 1 2 3 30 30 H 1.08997 * 109.46521 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47237 * 240.00356 * 2 1 3 32 32 H 1.09003 * 109.47438 * 119.99943 * 2 1 3 33 33 H 1.08005 * 119.84698 * 359.97425 * 4 3 2 34 34 H 1.08000 * 120.05572 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47253 * 60.00958 * 10 9 7 36 36 H 1.09008 * 109.46815 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47484 * 300.00327 * 10 9 7 38 38 H 1.09002 * 109.47382 * 59.99849 * 13 12 11 39 39 H 1.09001 * 109.46938 * 299.99835 * 13 12 11 40 40 H 1.09004 * 109.46746 * 294.99703 * 18 14 13 41 41 H 1.08998 * 109.47205 * 54.99872 * 18 14 13 42 42 H 0.96996 * 120.00103 * 180.02562 * 22 21 19 43 43 H 1.08006 * 119.95173 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0700 1.2024 5 6 2.7206 3.3690 1.2147 6 6 2.9564 4.0362 0.0093 7 6 3.4466 5.4262 0.0147 8 8 3.6499 6.0029 -1.0352 9 8 3.6693 6.0575 1.1843 10 6 4.1521 7.4250 1.1137 11 6 2.7228 3.3756 -1.2051 12 8 2.9483 4.0122 -2.3814 13 6 2.6884 3.2755 -3.5780 14 6 2.9992 4.1512 -4.7935 15 1 2.4353 5.0815 -4.7248 16 6 4.4398 4.4517 -4.8264 17 7 5.5500 4.6849 -4.8532 18 6 2.6038 3.4085 -6.0715 19 6 2.7947 4.3160 -7.2593 20 1 3.1618 5.3217 -7.1171 21 6 2.5018 3.8620 -8.5279 22 7 2.0562 2.6368 -8.7012 23 14 2.7391 4.9866 -10.0003 24 1 4.1171 4.8250 -10.5297 25 1 1.7581 4.6320 -11.0573 26 1 2.5307 6.3969 -9.5847 27 6 2.2556 2.0696 -1.1980 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0797 1.5556 2.1344 34 1 2.8977 3.8712 2.1543 35 1 3.4255 8.0400 0.5828 36 1 4.2898 7.8142 2.1225 37 1 5.1039 7.4473 0.5829 38 1 1.6397 2.9792 -3.6017 39 1 3.3179 2.3860 -3.6009 40 1 3.2299 2.5236 -6.1859 41 1 1.5579 3.1079 -6.0083 42 1 1.8505 2.3173 -9.5936 43 1 2.0696 1.5583 -2.1310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488575649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:12 Heat of formation + Delta-G solvation = -107.441677 kcal Electronic energy + Delta-G solvation = -25795.450705 eV Core-core repulsion = 21998.038870 eV Total energy + Delta-G solvation = -3797.411835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85314 -40.74110 -39.17863 -37.87567 -37.34624 -35.71731 -34.98630 -33.80067 -31.31770 -30.87507 -29.08577 -28.39813 -25.92245 -25.45589 -23.75595 -23.05246 -22.91849 -21.63910 -19.27522 -18.87373 -18.56009 -18.29066 -17.79670 -17.39381 -16.88004 -16.61003 -16.33014 -15.73520 -15.55128 -15.35067 -14.93595 -14.62787 -14.51841 -14.41231 -14.26170 -14.09225 -13.91955 -13.74723 -13.43807 -13.16895 -13.08269 -12.95607 -12.77482 -12.61294 -12.48371 -12.43839 -12.14237 -11.93315 -11.80432 -11.77437 -11.71474 -11.59916 -11.37579 -11.28606 -10.58428 -9.94754 -9.28281 -8.23425 -6.31286 -0.30984 0.40437 1.38564 1.40898 1.50160 1.53285 1.71839 1.80440 1.93392 2.10120 2.40982 2.72430 3.07223 3.14475 3.57658 3.76193 3.85027 3.97032 4.04066 4.11341 4.29440 4.30576 4.31727 4.41540 4.43382 4.48534 4.56581 4.63580 4.67252 4.69487 4.73405 4.97015 5.07138 5.16946 5.18560 5.24558 5.37491 5.38802 5.47470 5.52368 5.59098 5.73173 5.76689 6.12551 6.31385 6.67588 6.77666 6.80789 7.37064 8.87518 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003511 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.711280 B = 7973.438134 C = 9946.124276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C 0.001 3.999 4 C -0.166 4.166 5 C -0.015 4.015 6 C -0.200 4.200 7 C 0.501 3.499 8 O -0.529 6.529 9 O -0.356 6.356 10 C 0.031 3.969 11 C 0.177 3.823 12 O -0.309 6.309 13 C 0.067 3.933 14 C 0.021 3.979 15 H 0.120 0.880 16 C 0.254 3.746 17 N -0.503 5.503 18 C 0.044 3.956 19 C -0.544 4.544 20 H 0.050 0.950 21 C 0.018 3.982 22 N -0.918 5.918 23 Si 0.947 3.053 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.268 1.268 27 C -0.229 4.229 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.057 0.943 36 H 0.141 0.859 37 H 0.051 0.949 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.012 0.988 41 H 0.048 0.952 42 H 0.266 0.734 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 -4.164 26.053 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C 0.000 4.000 4 C -0.184 4.184 5 C -0.033 4.033 6 C -0.202 4.202 7 C 0.348 3.652 8 O -0.419 6.419 9 O -0.273 6.273 10 C -0.062 4.062 11 C 0.129 3.871 12 O -0.222 6.222 13 C -0.008 4.008 14 C -0.001 4.001 15 H 0.137 0.863 16 C -0.063 4.063 17 N -0.180 5.180 18 C 0.006 3.994 19 C -0.582 4.582 20 H 0.069 0.931 21 C -0.182 4.182 22 N -0.558 5.558 23 Si 0.773 3.227 24 H -0.209 1.209 25 H -0.199 1.199 26 H -0.192 1.192 27 C -0.248 4.248 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.427 -3.512 25.523 25.990 hybrid contribution 0.041 0.819 -1.623 1.819 sum -3.385 -2.693 23.900 24.288 Atomic orbital electron populations 1.21744 0.93580 1.02824 1.02262 1.20765 0.96919 0.90455 1.04684 1.20352 0.90904 0.96823 0.91890 1.21284 1.03598 0.94519 0.98952 1.21520 0.91482 0.94336 0.96005 1.18625 1.16145 0.92101 0.93362 1.21359 0.74534 0.87576 0.81777 1.90917 1.49255 1.67843 1.33934 1.86496 1.77737 1.30270 1.32822 1.23510 0.98982 0.77899 1.05774 1.19328 0.91427 0.91420 0.84876 1.86303 1.81170 1.41937 1.12744 1.23069 1.03659 0.93997 0.80104 1.19213 0.82227 1.02375 0.96250 0.86273 1.29380 0.95397 0.91436 0.90045 1.80913 1.14539 1.10814 1.11780 1.18968 0.97960 0.94561 0.87923 1.21462 1.44454 0.99611 0.92699 0.93145 1.25630 0.94715 0.96396 1.01463 1.69997 1.45239 1.17117 1.23404 0.85712 0.77802 0.79666 0.79531 1.20940 1.19935 1.19245 1.21353 1.08832 0.93417 1.01175 0.91889 0.93321 0.90857 0.90271 0.88346 0.81637 0.81880 0.92370 0.84129 0.92974 0.86955 0.90366 0.96925 0.93417 0.92480 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.90 71.98 0.71 -0.84 16 2 C -0.09 -1.02 6.05 29.85 0.18 -0.84 16 3 C 0.00 0.01 5.14 -19.83 -0.10 -0.09 16 4 C -0.17 -2.37 9.67 22.23 0.21 -2.16 16 5 C -0.02 -0.28 9.61 22.53 0.22 -0.07 16 6 C -0.20 -5.44 5.89 -20.02 -0.12 -5.55 16 7 C 0.50 15.64 7.89 70.24 0.55 16.20 16 8 O -0.53 -21.01 14.95 26.84 0.40 -20.61 16 9 O -0.36 -8.64 9.82 -56.65 -0.56 -9.19 16 10 C 0.03 0.59 10.56 113.37 1.20 1.79 16 11 C 0.18 5.12 6.70 22.86 0.15 5.27 16 12 O -0.31 -10.74 7.95 -68.65 -0.55 -11.29 16 13 C 0.07 2.10 4.09 71.98 0.29 2.40 16 14 C 0.02 0.82 2.45 -12.60 -0.03 0.79 16 15 H 0.12 4.57 8.14 -2.39 -0.02 4.55 16 16 C 0.25 11.60 13.71 89.46 1.23 12.82 16 17 N -0.50 -24.88 18.53 19.99 0.37 -24.51 16 18 C 0.04 2.04 4.42 29.85 0.13 2.17 16 19 C -0.54 -29.29 8.60 25.60 0.22 -29.07 16 20 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 21 C 0.02 0.97 5.46 84.66 0.46 1.43 16 22 N -0.92 -51.91 13.29 21.45 0.28 -51.62 16 23 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 C -0.23 -5.09 8.67 22.34 0.19 -4.90 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.10 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.16 2.16 7.61 -2.91 -0.02 2.14 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 2.85 7.65 -2.39 -0.02 2.83 16 39 H 0.08 2.28 7.67 -2.39 -0.02 2.27 16 40 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 Total: -1.00 -74.03 376.81 8.50 -65.53 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.01 Total: 6.52 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.51 Total: -0.64 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: 0.66 Total: -76.13 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.70 Total: -41.09 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -74.03 8.50 -65.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488575649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.915 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds