Wall clock time and date at job start Tue Mar 31 2020 11:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30295 * 126.34066 * 2 1 4 4 N 1.28525 * 110.07833 * 180.28133 * 3 2 1 5 5 C 1.31288 * 109.85475 * 359.74878 * 4 3 2 6 6 S 1.76196 * 126.48240 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00273 * 359.96116 * 6 5 4 8 8 C 1.50695 * 109.47151 * 179.97438 * 7 6 5 9 9 C 1.38641 * 119.75051 * 269.72865 * 8 7 6 10 10 C 1.37616 * 120.24799 * 179.72426 * 9 8 7 11 11 C 1.40711 * 119.74388 * 0.57015 * 10 9 8 12 12 C 1.41403 * 120.24256 * 179.68778 * 11 10 9 13 13 H 1.08000 * 120.00203 * 24.39892 * 12 11 10 14 14 C 1.39946 * 119.99861 * 204.40989 * 12 11 10 15 15 N 1.30832 * 120.00113 * 17.84998 * 14 12 11 16 16 Si 1.86796 * 120.00227 * 197.85371 * 14 12 11 17 17 H 1.48495 * 109.47226 * 89.99341 * 16 14 12 18 18 H 1.48498 * 109.47233 * 210.00215 * 16 14 12 19 19 H 1.48504 * 109.47001 * 329.99919 * 16 14 12 20 20 C 1.40714 * 119.51376 * 359.70303 * 11 10 9 21 21 C 1.37616 * 119.74477 * 0.02562 * 20 11 10 22 22 N 1.36539 * 107.03132 * 0.02562 * 5 4 3 23 23 C 1.46500 * 127.14057 * 179.97438 * 22 5 4 24 24 C 1.52997 * 109.47326 * 300.02966 * 23 22 5 25 25 C 1.53006 * 109.46933 * 60.02731 * 23 22 5 26 26 H 1.09007 * 109.47350 * 270.12448 * 1 2 3 27 27 H 1.08999 * 109.47451 * 30.12703 * 1 2 3 28 28 H 1.08998 * 109.47297 * 150.13158 * 1 2 3 29 29 H 1.08997 * 109.46970 * 300.00096 * 7 6 5 30 30 H 1.09003 * 109.46765 * 59.99693 * 7 6 5 31 31 H 1.08005 * 119.87247 * 359.97341 * 9 8 7 32 32 H 1.08002 * 120.12742 * 180.27202 * 10 9 8 33 33 H 0.96995 * 120.00039 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.12889 * 179.97438 * 20 11 10 35 35 H 1.08005 * 119.87597 * 180.02562 * 21 20 11 36 36 H 1.08993 * 109.46970 * 180.02562 * 23 22 5 37 37 H 1.08999 * 109.46901 * 299.99632 * 24 23 22 38 38 H 1.08999 * 109.46628 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.47200 * 59.99982 * 24 23 22 40 40 H 1.09000 * 109.46856 * 299.99974 * 25 23 22 41 41 H 1.09004 * 109.47133 * 59.99461 * 25 23 22 42 42 H 1.08994 * 109.46944 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5129 0.6896 -0.0059 5 6 3.5952 -0.6207 -0.0047 6 16 5.0747 -1.5774 -0.0104 7 6 6.3066 -0.2514 -0.0192 8 6 7.6894 -0.8504 -0.0245 9 6 8.3287 -1.1160 1.1767 10 6 9.5892 -1.6681 1.1838 11 6 10.2340 -1.9520 -0.0342 12 6 11.5318 -2.5132 -0.0392 13 1 11.8782 -3.0804 0.8121 14 6 12.3676 -2.3335 -1.1472 15 7 12.1134 -1.3847 -2.0114 16 14 13.8462 -3.4483 -1.3924 17 1 13.4469 -4.6302 -2.1979 18 1 14.9157 -2.7029 -2.1037 19 1 14.3516 -3.8982 -0.0705 20 6 9.5778 -1.6729 -1.2473 21 6 8.3152 -1.1259 -1.2305 22 7 2.3173 -1.1016 0.0020 23 6 1.9009 -2.5062 0.0052 24 6 2.4418 -3.2014 -1.2456 25 6 2.4529 -3.1989 1.2528 26 1 -0.3634 0.0022 1.0277 27 1 -0.3634 0.8888 -0.5158 28 1 -0.3634 -0.8911 -0.5118 29 1 6.1729 0.3629 -0.9096 30 1 6.1819 0.3662 0.8703 31 1 7.8339 -0.8925 2.1104 32 1 10.0837 -1.8783 2.1207 33 1 12.6929 -1.2599 -2.7791 34 1 10.0636 -1.8863 -2.1880 35 1 7.8094 -0.9112 -2.1604 36 1 0.8124 -2.5623 0.0102 37 1 2.0485 -2.7079 -2.1344 38 1 2.1323 -4.2465 -1.2429 39 1 3.5304 -3.1453 -1.2505 40 1 3.5415 -3.1427 1.2479 41 1 2.0676 -2.7035 2.1440 42 1 2.1427 -4.2438 1.2554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488747332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:39 Heat of formation + Delta-G solvation = 75.042051 kcal Electronic energy + Delta-G solvation = -23120.504360 eV Core-core repulsion = 19806.051236 eV Total energy + Delta-G solvation = -3314.453125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.82522 -37.71509 -36.79520 -34.08831 -32.64417 -31.36348 -31.29322 -29.39629 -28.09151 -27.62340 -27.34523 -24.07860 -23.83755 -21.72045 -21.10768 -20.75959 -19.89355 -17.49212 -17.40761 -16.42369 -16.26315 -15.41443 -14.88030 -14.44510 -14.37005 -14.03453 -13.94119 -13.69770 -13.69168 -13.27250 -13.15739 -12.80100 -12.61404 -12.58859 -12.16218 -12.03729 -11.83462 -11.76343 -11.56012 -11.33282 -11.18100 -11.08724 -10.83169 -10.61633 -10.46838 -10.22385 -9.95524 -9.75161 -9.64190 -9.47664 -9.21138 -7.58210 -7.40940 -7.31909 -6.88983 -4.46437 1.30511 1.70715 2.35564 2.54043 2.85254 2.89256 2.99222 3.01955 3.04502 3.27101 3.83914 4.17413 4.25713 4.52640 4.52753 4.60676 4.74382 5.15515 5.19193 5.24062 5.33318 5.42726 5.43471 5.53684 5.58801 5.64560 5.71071 5.75901 5.86597 5.98408 6.11071 6.26046 6.27502 6.33002 6.76983 6.86287 6.95328 7.15859 7.24054 7.49972 7.72572 7.93856 7.98670 8.17010 8.51716 8.75110 8.76169 8.84397 10.04443 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002662 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.338674 B =10515.558585 C =10828.727605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.289 5.289 4 N -0.299 5.299 5 C 0.169 3.831 6 S -0.027 6.027 7 C -0.019 4.019 8 C -0.219 4.219 9 C -0.064 4.064 10 C -0.227 4.227 11 C 0.118 3.882 12 C -0.453 4.453 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.783 5.783 16 Si 0.910 3.090 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.168 4.168 21 C -0.076 4.076 22 N -0.463 5.463 23 C 0.131 3.869 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.283 0.717 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.436 -4.808 1.500 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.130 5.130 4 N -0.142 5.142 5 C -0.205 4.205 6 S 0.206 5.794 7 C -0.166 4.166 8 C -0.224 4.224 9 C -0.084 4.084 10 C -0.247 4.247 11 C 0.115 3.885 12 C -0.482 4.482 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.408 5.408 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.188 4.188 21 C -0.097 4.097 22 N -0.158 5.158 23 C 0.028 3.972 24 C -0.231 4.231 25 C -0.230 4.230 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.874 -4.395 1.287 18.451 hybrid contribution 0.068 -0.346 -0.191 0.401 sum -17.806 -4.741 1.096 18.459 Atomic orbital electron populations 1.20156 0.84017 1.04178 1.03715 1.24989 0.96716 0.82676 1.06074 1.73907 0.96746 1.24151 1.18174 1.74690 1.11659 1.06967 1.20913 1.27284 0.91315 0.95495 1.06404 1.86034 0.89024 1.12485 1.91825 1.22241 0.93064 0.95748 1.05549 1.18408 0.93690 1.16116 0.94233 1.20405 0.94915 0.97869 0.95249 1.20952 0.96842 1.09841 0.97115 1.17695 0.92240 0.87623 0.90972 1.19708 0.97874 1.28908 1.01740 0.90114 1.25982 0.99528 0.94163 0.94786 1.69825 1.36208 1.24240 1.10508 0.86268 0.80024 0.80592 0.79655 1.19128 1.20190 1.18487 1.21303 0.93700 1.04951 0.98827 1.20553 0.95410 0.98580 0.95116 1.46730 1.05018 1.08103 1.55976 1.21536 1.00654 0.76992 0.98019 1.22291 1.04083 1.00877 0.95864 1.22281 1.03980 1.00884 0.95879 0.89891 0.88818 0.90716 0.89677 0.89747 0.89116 0.88695 0.90571 0.86243 0.89140 0.87889 0.91843 0.90033 0.89905 0.89931 0.91857 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.10 36.01 0.36 -0.11 16 2 C 0.17 2.20 8.07 -154.00 -1.24 0.95 16 3 N -0.29 -5.01 12.17 32.99 0.40 -4.61 16 4 N -0.30 -5.62 11.60 30.68 0.36 -5.26 16 5 C 0.17 2.78 7.56 -88.33 -0.67 2.11 16 6 S -0.03 -0.45 18.10 -107.50 -1.95 -2.40 16 7 C -0.02 -0.36 5.35 36.00 0.19 -0.17 16 8 C -0.22 -4.66 5.16 -104.33 -0.54 -5.20 16 9 C -0.06 -1.39 9.67 -39.66 -0.38 -1.78 16 10 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 11 C 0.12 3.03 5.58 -106.82 -0.60 2.44 16 12 C -0.45 -11.53 9.05 -37.74 -0.34 -11.87 16 13 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 14 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 15 N -0.78 -19.53 10.95 55.55 0.61 -18.92 16 16 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 21 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 22 N -0.46 -6.09 2.66 -106.47 -0.28 -6.37 16 23 C 0.13 1.20 3.46 -67.93 -0.23 0.97 16 24 C -0.17 -1.55 9.24 37.16 0.34 -1.21 16 25 C -0.17 -1.53 9.24 37.16 0.34 -1.18 16 26 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.40 7.26 -51.93 -0.38 0.02 16 29 H 0.08 1.60 8.08 -51.92 -0.42 1.18 16 30 H 0.08 1.57 8.08 -51.91 -0.42 1.15 16 31 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 34 H 0.12 3.09 6.16 -52.48 -0.32 2.76 16 35 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.10 0.65 6.90 -51.93 -0.36 0.30 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.94 6.03 -51.93 -0.31 0.62 16 40 H 0.08 0.92 6.03 -51.93 -0.31 0.61 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -29.53 359.93 -10.30 -39.83 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.88 Total: 5.19 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -3.95 Total: -25.76 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 1.08 Total: -35.17 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.95 Total: -2.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.53 -10.30 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488747332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.868 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds