Wall clock time and date at job start Tue Mar 31 2020 11:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30295 * 126.34066 * 2 1 4 4 N 1.28525 * 110.07833 * 180.28133 * 3 2 1 5 5 C 1.31288 * 109.85475 * 359.74878 * 4 3 2 6 6 S 1.76196 * 126.48240 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00273 * 359.96116 * 6 5 4 8 8 C 1.50695 * 109.47151 * 179.97438 * 7 6 5 9 9 C 1.38641 * 119.75051 * 269.72865 * 8 7 6 10 10 C 1.37616 * 120.24799 * 179.72426 * 9 8 7 11 11 C 1.40711 * 119.74388 * 0.57015 * 10 9 8 12 12 C 1.41403 * 120.24256 * 179.68778 * 11 10 9 13 13 H 1.08000 * 120.00203 * 24.39892 * 12 11 10 14 14 C 1.39946 * 119.99861 * 204.40989 * 12 11 10 15 15 N 1.30832 * 120.00113 * 17.84998 * 14 12 11 16 16 Si 1.86796 * 120.00227 * 197.85371 * 14 12 11 17 17 H 1.48495 * 109.47226 * 89.99341 * 16 14 12 18 18 H 1.48498 * 109.47233 * 210.00215 * 16 14 12 19 19 H 1.48504 * 109.47001 * 329.99919 * 16 14 12 20 20 C 1.40714 * 119.51376 * 359.70303 * 11 10 9 21 21 C 1.37616 * 119.74477 * 0.02562 * 20 11 10 22 22 N 1.36539 * 107.03132 * 0.02562 * 5 4 3 23 23 C 1.46500 * 127.14057 * 179.97438 * 22 5 4 24 24 C 1.52997 * 109.47326 * 300.02966 * 23 22 5 25 25 C 1.53006 * 109.46933 * 60.02731 * 23 22 5 26 26 H 1.09007 * 109.47350 * 270.12448 * 1 2 3 27 27 H 1.08999 * 109.47451 * 30.12703 * 1 2 3 28 28 H 1.08998 * 109.47297 * 150.13158 * 1 2 3 29 29 H 1.08997 * 109.46970 * 300.00096 * 7 6 5 30 30 H 1.09003 * 109.46765 * 59.99693 * 7 6 5 31 31 H 1.08005 * 119.87247 * 359.97341 * 9 8 7 32 32 H 1.08002 * 120.12742 * 180.27202 * 10 9 8 33 33 H 0.96995 * 120.00039 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.12889 * 179.97438 * 20 11 10 35 35 H 1.08005 * 119.87597 * 180.02562 * 21 20 11 36 36 H 1.08993 * 109.46970 * 180.02562 * 23 22 5 37 37 H 1.08999 * 109.46901 * 299.99632 * 24 23 22 38 38 H 1.08999 * 109.46628 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.47200 * 59.99982 * 24 23 22 40 40 H 1.09000 * 109.46856 * 299.99974 * 25 23 22 41 41 H 1.09004 * 109.47133 * 59.99461 * 25 23 22 42 42 H 1.08994 * 109.46944 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5129 0.6896 -0.0059 5 6 3.5952 -0.6207 -0.0047 6 16 5.0747 -1.5774 -0.0104 7 6 6.3066 -0.2514 -0.0192 8 6 7.6894 -0.8504 -0.0245 9 6 8.3287 -1.1160 1.1767 10 6 9.5892 -1.6681 1.1838 11 6 10.2340 -1.9520 -0.0342 12 6 11.5318 -2.5132 -0.0392 13 1 11.8782 -3.0804 0.8121 14 6 12.3676 -2.3335 -1.1472 15 7 12.1134 -1.3847 -2.0114 16 14 13.8462 -3.4483 -1.3924 17 1 13.4469 -4.6302 -2.1979 18 1 14.9157 -2.7029 -2.1037 19 1 14.3516 -3.8982 -0.0705 20 6 9.5778 -1.6729 -1.2473 21 6 8.3152 -1.1259 -1.2305 22 7 2.3173 -1.1016 0.0020 23 6 1.9009 -2.5062 0.0052 24 6 2.4418 -3.2014 -1.2456 25 6 2.4529 -3.1989 1.2528 26 1 -0.3634 0.0022 1.0277 27 1 -0.3634 0.8888 -0.5158 28 1 -0.3634 -0.8911 -0.5118 29 1 6.1729 0.3629 -0.9096 30 1 6.1819 0.3662 0.8703 31 1 7.8339 -0.8925 2.1104 32 1 10.0837 -1.8783 2.1207 33 1 12.6929 -1.2599 -2.7791 34 1 10.0636 -1.8863 -2.1880 35 1 7.8094 -0.9112 -2.1604 36 1 0.8124 -2.5623 0.0102 37 1 2.0485 -2.7079 -2.1344 38 1 2.1323 -4.2465 -1.2429 39 1 3.5304 -3.1453 -1.2505 40 1 3.5415 -3.1427 1.2479 41 1 2.0676 -2.7035 2.1440 42 1 2.1427 -4.2438 1.2554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488747332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:38 Heat of formation + Delta-G solvation = 61.766394 kcal Electronic energy + Delta-G solvation = -23121.080036 eV Core-core repulsion = 19806.051236 eV Total energy + Delta-G solvation = -3315.028801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.94335 -39.52790 -37.67849 -35.88387 -33.57914 -33.06004 -32.30720 -31.23283 -29.51151 -28.61601 -28.30137 -25.77763 -24.90399 -22.94412 -22.76493 -22.13256 -21.26690 -19.25636 -18.55834 -17.48538 -17.34332 -17.17579 -16.07869 -15.80315 -15.72198 -15.65767 -15.46114 -14.77148 -14.45548 -14.33336 -14.10049 -13.91572 -13.85196 -13.68761 -13.50366 -13.40478 -13.26624 -12.87368 -12.75768 -12.61560 -12.55904 -12.38915 -12.28773 -12.12880 -11.84696 -11.53491 -11.32697 -11.25115 -11.24072 -10.97649 -10.75969 -9.41722 -9.24240 -8.68256 -8.61484 -6.36518 -0.01502 0.61903 0.81644 1.11676 1.27813 1.39474 1.52584 1.56170 1.68128 1.71235 2.19821 2.71944 3.39700 3.49995 3.71578 3.82627 3.91613 4.02689 4.04885 4.05797 4.31506 4.48941 4.55529 4.58358 4.60808 4.65629 4.69654 4.72492 4.74520 4.87998 4.94740 5.02372 5.09075 5.12577 5.17805 5.28326 5.31141 5.39956 5.65980 5.85264 5.89012 6.06501 6.14590 6.32663 6.65079 6.89479 6.97844 7.58244 8.28397 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002662 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.338674 B =10515.558585 C =10828.727605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.183 3.817 3 N -0.338 5.338 4 N -0.338 5.338 5 C 0.152 3.848 6 S 0.010 5.990 7 C -0.023 4.023 8 C -0.208 4.208 9 C -0.067 4.067 10 C -0.240 4.240 11 C 0.088 3.912 12 C -0.491 4.491 13 H 0.080 0.920 14 C 0.035 3.965 15 N -0.819 5.819 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.189 4.189 21 C -0.082 4.082 22 N -0.457 5.457 23 C 0.122 3.878 24 C -0.172 4.172 25 C -0.170 4.170 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.290 0.710 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.345 -6.337 1.825 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 N -0.178 5.178 4 N -0.182 5.182 5 C -0.224 4.224 6 S 0.242 5.758 7 C -0.171 4.171 8 C -0.212 4.212 9 C -0.087 4.087 10 C -0.260 4.260 11 C 0.085 3.915 12 C -0.520 4.520 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.444 5.444 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.181 1.181 20 C -0.209 4.209 21 C -0.102 4.102 22 N -0.152 5.152 23 C 0.021 3.979 24 C -0.230 4.230 25 C -0.228 4.228 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.777 -5.929 1.620 21.667 hybrid contribution 0.603 0.175 -0.254 0.678 sum -20.174 -5.754 1.365 21.023 Atomic orbital electron populations 1.20488 0.79817 1.06126 1.05640 1.26028 0.98679 0.81702 1.02336 1.73818 0.96738 1.26273 1.20974 1.74578 1.13106 1.08357 1.22130 1.27116 0.92564 0.95189 1.07553 1.85762 0.88257 1.09475 1.92259 1.22062 0.92766 0.96852 1.05395 1.18624 0.94866 1.14101 0.93591 1.20670 0.94354 0.97113 0.96522 1.21147 0.97703 1.10279 0.96895 1.18024 0.93029 0.88659 0.91837 1.19931 0.98616 1.30524 1.02951 0.90207 1.26819 1.02243 0.95080 0.93971 1.69876 1.37733 1.25584 1.11217 0.85172 0.76310 0.78445 0.79636 1.18565 1.19302 1.18056 1.21258 0.94724 1.06686 0.98217 1.20735 0.94807 0.98192 0.96425 1.47042 1.03635 1.09726 1.54794 1.22015 1.03013 0.74715 0.98145 1.22305 1.02169 1.02780 0.95701 1.22293 1.02111 1.02762 0.95664 0.87764 0.88196 0.87462 0.90186 0.89693 0.86574 0.87946 0.89913 0.87822 0.87743 0.83827 0.92029 0.87001 0.92660 0.92609 0.91950 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.10 71.24 0.72 0.03 16 2 C 0.18 4.42 8.07 137.63 1.11 5.53 16 3 N -0.34 -11.48 12.17 -49.53 -0.60 -12.08 16 4 N -0.34 -12.71 11.60 -56.85 -0.66 -13.37 16 5 C 0.15 4.86 7.56 179.55 1.36 6.22 16 6 S 0.01 0.32 18.10 -56.49 -1.02 -0.70 16 7 C -0.02 -0.87 5.35 71.23 0.38 -0.49 16 8 C -0.21 -8.90 5.16 -19.67 -0.10 -9.00 16 9 C -0.07 -2.91 9.67 22.22 0.21 -2.69 16 10 C -0.24 -11.66 9.80 22.73 0.22 -11.44 16 11 C 0.09 4.68 5.58 -21.29 -0.12 4.56 16 12 C -0.49 -26.02 9.05 23.46 0.21 -25.80 16 13 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 14 C 0.03 1.72 5.14 85.26 0.44 2.16 16 15 N -0.82 -42.34 10.95 21.83 0.24 -42.10 16 16 Si 0.98 37.36 29.60 68.60 2.03 39.39 16 17 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 18 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 20 C -0.19 -9.89 8.70 22.73 0.20 -9.69 16 21 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 22 N -0.46 -10.94 2.66 -490.76 -1.30 -12.25 16 23 C 0.12 1.78 3.46 44.99 0.16 1.94 16 24 C -0.17 -2.55 9.24 71.98 0.66 -1.89 16 25 C -0.17 -2.48 9.24 71.98 0.66 -1.81 16 26 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 0.53 7.26 -2.39 -0.02 0.51 16 29 H 0.08 3.05 8.08 -2.40 -0.02 3.04 16 30 H 0.08 3.15 8.08 -2.39 -0.02 3.13 16 31 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 32 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 33 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 34 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 35 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.14 0.99 6.90 -2.39 -0.02 0.97 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.15 6.03 -2.39 -0.01 1.14 16 40 H 0.05 1.13 6.03 -2.39 -0.01 1.12 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.43 359.93 6.04 -62.39 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 1.02 Total: 24.66 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 6.33 Total: -45.95 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -2.33 Total: -79.80 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.02 Total: -0.70 kcal Total: -68.43 6.04 -62.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488747332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.158 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds