Wall clock time and date at job start Tue Mar 31 2020 11:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99822 * 2 1 4 4 C 1.52995 * 113.28375 * 313.06646 * 3 2 1 5 5 C 1.53499 * 114.20278 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98378 * 220.34799 * 5 3 2 7 7 C 1.34776 * 136.05404 * 207.08794 * 6 5 3 8 8 O 1.21714 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.46254 * 119.99646 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00195 * 173.06009 * 9 7 6 11 11 C 1.46964 * 119.99829 * 348.90068 * 10 9 7 12 12 C 1.40023 * 120.09800 * 131.88827 * 11 10 9 13 13 C 1.37600 * 119.89392 * 180.02562 * 12 11 10 14 14 C 1.39177 * 120.10193 * 0.25828 * 13 12 11 15 15 O 1.35570 * 119.89541 * 179.72424 * 14 13 12 16 16 C 1.34782 * 117.00148 * 354.38048 * 15 14 13 17 17 H 1.07995 * 120.00058 * 5.09497 * 16 15 14 18 18 C 1.38725 * 119.99596 * 185.09366 * 16 15 14 19 19 N 1.31509 * 119.99603 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00329 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46760 * 90.00057 * 20 18 16 22 22 H 1.48504 * 109.47331 * 210.00137 * 20 18 16 23 23 H 1.48501 * 109.47288 * 330.00610 * 20 18 16 24 24 C 1.39178 * 120.20195 * 359.48633 * 14 13 12 25 25 C 1.37598 * 120.10069 * 0.51351 * 24 14 13 26 26 C 1.47067 * 87.88549 * 27.34497 * 6 5 3 27 27 H 1.09002 * 109.46894 * 59.99702 * 1 2 3 28 28 H 1.09002 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47105 * 299.99606 * 1 2 3 30 30 H 1.09003 * 109.47441 * 286.93661 * 4 3 2 31 31 H 1.09005 * 109.46731 * 46.93689 * 4 3 2 32 32 H 1.08999 * 109.47024 * 166.93297 * 4 3 2 33 33 H 1.09001 * 113.46718 * 105.57003 * 5 3 2 34 34 H 1.08997 * 113.47120 * 335.12986 * 5 3 2 35 35 H 1.08007 * 120.00254 * 353.05880 * 9 7 6 36 36 H 1.08001 * 120.00363 * 168.90572 * 10 9 7 37 37 H 1.08001 * 120.05603 * 0.04830 * 12 11 10 38 38 H 1.08004 * 119.94742 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00057 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.94675 * 180.25672 * 24 14 13 41 41 H 1.08003 * 120.04914 * 179.76711 * 25 24 14 42 42 H 1.08991 * 113.46641 * 87.43618 * 26 6 5 43 43 H 1.08998 * 113.46766 * 217.88172 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3110 -0.0006 6 7 3.4898 2.4308 0.9512 7 6 4.2843 3.4708 1.2733 8 8 5.3447 3.6280 0.6968 9 6 3.8723 4.4104 2.3156 10 6 4.7256 5.3683 2.7368 11 6 6.1383 5.3224 2.3345 12 6 6.7627 6.4700 1.8307 13 6 8.0855 6.4221 1.4549 14 6 8.8012 5.2341 1.5699 15 8 10.1028 5.1902 1.1931 16 6 10.6084 6.2948 0.6093 17 1 10.0078 7.1893 0.5349 18 6 11.9003 6.2827 0.1041 19 7 12.3939 7.3606 -0.4650 20 14 12.9394 4.7358 0.2336 21 1 12.7262 3.8941 -0.9712 22 1 14.3736 5.1093 0.3290 23 1 12.5445 3.9742 1.4457 24 6 8.1863 4.0923 2.0750 25 6 6.8639 4.1307 2.4534 26 6 2.1891 1.9127 1.4013 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7001 1.9618 -2.0283 31 1 0.2934 2.1835 -0.9604 32 1 1.6955 3.2714 -0.8228 33 1 3.9779 1.5811 -0.9639 34 1 3.9827 0.4054 0.4195 35 1 2.8854 4.3380 2.7484 36 1 4.3699 6.1682 3.3693 37 1 6.2070 7.3914 1.7376 38 1 8.5678 7.3067 1.0658 39 1 13.2973 7.3523 -0.8180 40 1 8.7468 3.1737 2.1663 41 1 6.3865 3.2432 2.8418 42 1 2.2692 1.1657 2.1909 43 1 1.4665 2.6953 1.6322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492260454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:45 Heat of formation + Delta-G solvation = -0.694470 kcal Electronic energy + Delta-G solvation = -25750.020963 eV Core-core repulsion = 21957.238034 eV Total energy + Delta-G solvation = -3792.782929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96553 -39.30788 -38.51278 -36.91279 -36.19058 -33.10948 -32.28240 -30.85732 -30.21305 -28.76271 -27.84454 -26.66727 -26.28057 -25.23541 -22.77297 -21.91683 -20.96955 -19.89192 -18.51216 -17.81966 -17.58175 -17.16409 -16.87410 -16.10652 -15.69581 -15.19788 -14.83123 -14.71311 -14.32805 -14.06037 -13.81576 -13.75020 -13.62635 -13.37656 -13.30843 -12.76398 -12.64271 -12.57564 -12.41341 -12.24169 -12.16433 -12.05437 -11.71916 -11.42349 -10.95423 -10.88708 -10.74500 -10.67008 -10.14454 -10.03975 -9.55956 -9.48534 -9.22251 -8.80826 -8.73666 -8.05799 -7.01009 -6.40720 -4.04698 1.17728 2.31022 2.54351 2.65445 3.24201 3.28398 3.31661 3.42985 3.57432 3.87181 4.22835 4.25866 4.50804 4.60498 4.75271 4.90123 4.90379 4.94717 5.03475 5.14020 5.15068 5.16595 5.21077 5.32985 5.35971 5.44048 5.48342 5.51267 5.64591 5.69306 5.72012 5.75101 6.17488 6.26677 6.37207 6.49425 6.66118 6.74393 6.91876 7.17078 7.30169 7.37770 7.67395 7.70319 7.85295 8.07292 8.38225 8.94549 9.58896 10.66681 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.002659 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.426443 B =10526.744120 C =11204.934344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.070 3.930 4 C -0.156 4.156 5 C 0.121 3.879 6 N -0.645 5.645 7 C 0.574 3.426 8 O -0.503 6.503 9 C -0.252 4.252 10 C 0.025 3.975 11 C -0.176 4.176 12 C -0.045 4.045 13 C -0.233 4.233 14 C 0.175 3.825 15 O -0.213 6.213 16 C -0.388 4.388 17 H 0.108 0.892 18 C 0.063 3.937 19 N -0.877 5.877 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.197 4.197 25 C -0.003 4.003 26 C 0.082 3.918 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.280 0.720 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.575 -10.895 4.052 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.284 6.284 3 C 0.029 3.971 4 C -0.213 4.213 5 C -0.003 4.003 6 N -0.384 5.384 7 C 0.367 3.633 8 O -0.378 6.378 9 C -0.273 4.273 10 C 0.006 3.994 11 C -0.176 4.176 12 C -0.063 4.063 13 C -0.253 4.253 14 C 0.122 3.878 15 O -0.118 6.118 16 C -0.463 4.463 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.515 5.515 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.217 4.217 25 C -0.022 4.022 26 C -0.043 4.043 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.330 -10.840 3.685 26.890 hybrid contribution 0.087 -0.325 -0.024 0.337 sum -24.243 -11.165 3.661 26.941 Atomic orbital electron populations 1.22806 0.80926 1.02901 1.00379 1.87969 1.19999 1.25740 1.94688 1.23242 0.94521 0.84251 0.95082 1.21976 1.01000 0.99598 0.98748 1.22894 0.92547 0.89940 0.94881 1.49220 1.22441 1.25835 1.40915 1.18012 0.82358 0.79261 0.83671 1.91026 1.20995 1.72621 1.53193 1.22543 1.01186 1.00939 1.02622 1.22376 0.92166 0.93533 0.91352 1.18356 0.92675 0.94974 1.11640 1.20767 0.93747 0.96017 0.95803 1.21085 0.95167 0.99015 1.09984 1.19257 0.83674 0.93216 0.91668 1.83505 1.20590 1.40036 1.67619 1.20825 0.99435 0.90059 1.35980 0.87480 1.24492 0.96265 0.98288 0.94985 1.69624 1.17262 1.27840 1.36769 0.86179 0.78501 0.82294 0.79941 1.19826 1.20753 1.18312 1.20002 0.95304 0.96923 1.09440 1.20437 0.92365 0.94694 0.94698 1.23635 0.85416 0.97746 0.97461 0.93374 0.89450 0.93821 0.90904 0.91274 0.90558 0.89640 0.89125 0.86156 0.85624 0.87277 0.84971 0.91016 0.86776 0.87975 0.89283 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.36 101.05 1.05 1.18 16 2 O -0.37 -3.10 10.71 -35.23 -0.38 -3.47 16 3 C 0.07 0.58 1.56 -89.97 -0.14 0.44 16 4 C -0.16 -1.13 8.96 37.15 0.33 -0.80 16 5 C 0.12 1.30 8.04 -8.50 -0.07 1.23 16 6 N -0.64 -7.75 3.50 -186.75 -0.65 -8.40 16 7 C 0.57 8.75 7.19 -13.04 -0.09 8.66 16 8 O -0.50 -10.05 13.25 5.18 0.07 -9.98 16 9 C -0.25 -3.20 9.76 -37.51 -0.37 -3.56 16 10 C 0.03 0.35 9.77 -37.19 -0.36 -0.02 16 11 C -0.18 -3.18 4.34 -105.03 -0.46 -3.64 16 12 C -0.04 -0.87 9.78 -39.15 -0.38 -1.25 16 13 C -0.23 -5.34 9.14 -39.47 -0.36 -5.71 16 14 C 0.17 4.32 6.66 -38.88 -0.26 4.06 16 15 O -0.21 -5.89 8.57 0.74 0.01 -5.88 16 16 C -0.39 -11.26 9.94 30.91 0.31 -10.95 16 17 H 0.11 3.17 5.41 -52.49 -0.28 2.88 16 18 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 19 N -0.88 -25.77 13.96 55.48 0.77 -24.99 16 20 Si 0.91 22.26 28.62 -169.99 -4.86 17.40 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.20 -4.34 9.97 -39.47 -0.39 -4.73 16 25 C 0.00 -0.07 6.77 -39.15 -0.26 -0.33 16 26 C 0.08 0.67 7.73 -8.37 -0.06 0.61 16 27 H 0.05 0.21 6.36 -51.93 -0.33 -0.12 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.37 6.12 -51.93 -0.32 0.05 16 32 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 33 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.12 1.12 7.98 -52.48 -0.42 0.70 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.13 3.13 5.62 -52.48 -0.29 2.84 16 39 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.10 1.81 7.45 -52.48 -0.39 1.41 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -33.75 361.72 -7.03 -40.77 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.81 Total: 2.20 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.62 Total: -13.09 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.12 Total: -33.40 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.30 Total: -19.33 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.75 -7.03 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492260454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.079 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds