Wall clock time and date at job start Tue Mar 31 2020 11:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99822 * 2 1 4 4 C 1.52995 * 113.28375 * 313.06646 * 3 2 1 5 5 C 1.53499 * 114.20278 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98378 * 220.34799 * 5 3 2 7 7 C 1.34776 * 136.05404 * 207.08794 * 6 5 3 8 8 O 1.21714 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.46254 * 119.99646 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00195 * 173.06009 * 9 7 6 11 11 C 1.46964 * 119.99829 * 348.90068 * 10 9 7 12 12 C 1.40023 * 120.09800 * 131.88827 * 11 10 9 13 13 C 1.37600 * 119.89392 * 180.02562 * 12 11 10 14 14 C 1.39177 * 120.10193 * 0.25828 * 13 12 11 15 15 O 1.35570 * 119.89541 * 179.72424 * 14 13 12 16 16 C 1.34782 * 117.00148 * 354.38048 * 15 14 13 17 17 H 1.07995 * 120.00058 * 5.09497 * 16 15 14 18 18 C 1.38725 * 119.99596 * 185.09366 * 16 15 14 19 19 N 1.31509 * 119.99603 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00329 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46760 * 90.00057 * 20 18 16 22 22 H 1.48504 * 109.47331 * 210.00137 * 20 18 16 23 23 H 1.48501 * 109.47288 * 330.00610 * 20 18 16 24 24 C 1.39178 * 120.20195 * 359.48633 * 14 13 12 25 25 C 1.37598 * 120.10069 * 0.51351 * 24 14 13 26 26 C 1.47067 * 87.88549 * 27.34497 * 6 5 3 27 27 H 1.09002 * 109.46894 * 59.99702 * 1 2 3 28 28 H 1.09002 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47105 * 299.99606 * 1 2 3 30 30 H 1.09003 * 109.47441 * 286.93661 * 4 3 2 31 31 H 1.09005 * 109.46731 * 46.93689 * 4 3 2 32 32 H 1.08999 * 109.47024 * 166.93297 * 4 3 2 33 33 H 1.09001 * 113.46718 * 105.57003 * 5 3 2 34 34 H 1.08997 * 113.47120 * 335.12986 * 5 3 2 35 35 H 1.08007 * 120.00254 * 353.05880 * 9 7 6 36 36 H 1.08001 * 120.00363 * 168.90572 * 10 9 7 37 37 H 1.08001 * 120.05603 * 0.04830 * 12 11 10 38 38 H 1.08004 * 119.94742 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00057 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.94675 * 180.25672 * 24 14 13 41 41 H 1.08003 * 120.04914 * 179.76711 * 25 24 14 42 42 H 1.08991 * 113.46641 * 87.43618 * 26 6 5 43 43 H 1.08998 * 113.46766 * 217.88172 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3110 -0.0006 6 7 3.4898 2.4308 0.9512 7 6 4.2843 3.4708 1.2733 8 8 5.3447 3.6280 0.6968 9 6 3.8723 4.4104 2.3156 10 6 4.7256 5.3683 2.7368 11 6 6.1383 5.3224 2.3345 12 6 6.7627 6.4700 1.8307 13 6 8.0855 6.4221 1.4549 14 6 8.8012 5.2341 1.5699 15 8 10.1028 5.1902 1.1931 16 6 10.6084 6.2948 0.6093 17 1 10.0078 7.1893 0.5349 18 6 11.9003 6.2827 0.1041 19 7 12.3939 7.3606 -0.4650 20 14 12.9394 4.7358 0.2336 21 1 12.7262 3.8941 -0.9712 22 1 14.3736 5.1093 0.3290 23 1 12.5445 3.9742 1.4457 24 6 8.1863 4.0923 2.0750 25 6 6.8639 4.1307 2.4534 26 6 2.1891 1.9127 1.4013 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7001 1.9618 -2.0283 31 1 0.2934 2.1835 -0.9604 32 1 1.6955 3.2714 -0.8228 33 1 3.9779 1.5811 -0.9639 34 1 3.9827 0.4054 0.4195 35 1 2.8854 4.3380 2.7484 36 1 4.3699 6.1682 3.3693 37 1 6.2070 7.3914 1.7376 38 1 8.5678 7.3067 1.0658 39 1 13.2973 7.3523 -0.8180 40 1 8.7468 3.1737 2.1663 41 1 6.3865 3.2432 2.8418 42 1 2.2692 1.1657 2.1909 43 1 1.4665 2.6953 1.6322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492260454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:44 Heat of formation + Delta-G solvation = -23.346980 kcal Electronic energy + Delta-G solvation = -25751.003249 eV Core-core repulsion = 21957.238034 eV Total energy + Delta-G solvation = -3793.765216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81989 -40.92197 -39.81440 -38.24579 -37.26536 -34.67955 -34.12149 -31.88980 -31.72563 -29.98767 -28.74220 -27.48342 -27.28136 -26.84301 -24.08123 -23.60034 -22.27634 -20.84417 -19.86575 -19.45781 -19.04446 -18.44957 -17.78646 -17.09394 -16.64036 -16.37440 -16.11172 -15.87749 -15.77756 -15.70752 -15.34552 -15.00810 -14.77281 -14.38756 -14.35656 -14.26381 -14.12467 -14.07935 -13.65950 -13.23988 -13.12102 -13.02708 -12.77482 -12.66853 -12.52838 -12.35971 -12.24546 -11.97591 -11.49042 -11.36398 -11.07141 -10.84613 -10.51338 -10.47788 -9.86364 -9.59725 -8.68311 -8.53386 -6.24335 -0.04796 0.63854 0.99153 1.27095 1.32916 1.48484 1.76433 2.25373 2.33936 2.76743 2.79496 3.01188 3.19895 3.21181 3.49337 3.75475 3.95398 4.01793 4.07410 4.10546 4.39299 4.46388 4.48357 4.50654 4.54225 4.55492 4.62016 4.68275 4.71896 4.77161 4.81089 4.83064 4.90960 4.95670 5.12054 5.16710 5.20623 5.39977 5.41045 5.64360 5.74714 5.78551 5.88161 6.20952 6.23278 6.72478 6.80695 7.24686 7.56286 8.58233 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.002659 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.426443 B =10526.744120 C =11204.934344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.384 6.384 3 C 0.083 3.917 4 C -0.154 4.154 5 C 0.103 3.897 6 N -0.644 5.644 7 C 0.559 3.441 8 O -0.566 6.566 9 C -0.219 4.219 10 C 0.007 3.993 11 C -0.145 4.145 12 C -0.053 4.053 13 C -0.248 4.248 14 C 0.131 3.869 15 O -0.244 6.244 16 C -0.401 4.401 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.205 4.205 25 C -0.004 4.004 26 C 0.086 3.914 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.286 0.714 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.318 -12.412 5.872 33.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.303 6.303 3 C 0.042 3.958 4 C -0.211 4.211 5 C -0.020 4.020 6 N -0.381 5.381 7 C 0.353 3.647 8 O -0.446 6.446 9 C -0.239 4.239 10 C -0.013 4.013 11 C -0.145 4.145 12 C -0.071 4.071 13 C -0.267 4.267 14 C 0.081 3.919 15 O -0.152 6.152 16 C -0.477 4.477 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.792 3.208 21 H -0.193 1.193 22 H -0.186 1.186 23 H -0.190 1.190 24 C -0.224 4.224 25 C -0.022 4.022 26 C -0.036 4.036 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.162 0.838 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.176 -12.394 5.530 32.178 hybrid contribution 0.979 -0.038 -0.537 1.117 sum -28.197 -12.433 4.993 31.218 Atomic orbital electron populations 1.23039 0.79048 1.04078 1.01557 1.87947 1.22001 1.25502 1.94833 1.23027 0.92431 0.84682 0.95621 1.21974 1.02474 0.98577 0.98097 1.23087 0.95191 0.89648 0.94059 1.49235 1.23326 1.24959 1.40578 1.18625 0.81925 0.80212 0.83896 1.91016 1.23753 1.74428 1.55389 1.22939 1.02910 0.97942 1.00156 1.22622 0.89395 0.95803 0.93448 1.18919 0.95179 0.93376 1.07072 1.21141 0.92447 0.98284 0.95266 1.21140 0.96952 0.97869 1.10717 1.19729 0.83469 0.94932 0.93739 1.83449 1.22318 1.39338 1.70067 1.20761 0.99848 0.90156 1.36971 0.89994 1.25282 0.97273 1.01418 0.94780 1.69699 1.18098 1.29618 1.38627 0.85243 0.77671 0.78403 0.79521 1.19349 1.18552 1.18960 1.20241 0.96566 0.96260 1.09322 1.20728 0.91255 0.96182 0.94054 1.23852 0.83619 0.98620 0.97508 0.92515 0.88463 0.92235 0.91524 0.88834 0.91473 0.91408 0.89081 0.81214 0.80863 0.83777 0.87137 0.90454 0.86483 0.85856 0.88001 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.36 113.37 1.17 1.30 16 2 O -0.38 -5.37 10.71 -148.98 -1.60 -6.96 16 3 C 0.08 1.14 1.56 -10.37 -0.02 1.13 16 4 C -0.15 -1.78 8.96 71.98 0.65 -1.14 16 5 C 0.10 2.11 8.04 83.18 0.67 2.78 16 6 N -0.64 -13.58 3.50 -863.45 -3.02 -16.60 16 7 C 0.56 15.42 7.19 86.33 0.62 16.04 16 8 O -0.57 -22.13 13.25 -4.39 -0.06 -22.19 16 9 C -0.22 -4.33 9.76 23.61 0.23 -4.10 16 10 C 0.01 0.14 9.77 23.82 0.23 0.38 16 11 C -0.14 -4.93 4.34 -20.13 -0.09 -5.01 16 12 C -0.05 -2.03 9.78 22.55 0.22 -1.81 16 13 C -0.25 -11.95 9.14 22.34 0.20 -11.75 16 14 C 0.13 6.84 6.66 22.72 0.15 6.99 16 15 O -0.24 -14.43 8.57 -20.27 -0.17 -14.60 16 16 C -0.40 -25.06 9.94 67.94 0.68 -24.39 16 17 H 0.08 5.33 5.41 -2.91 -0.02 5.31 16 18 C 0.01 0.67 5.49 84.86 0.47 1.14 16 19 N -0.92 -56.81 13.96 21.62 0.30 -56.51 16 20 Si 0.97 47.90 28.62 68.60 1.96 49.86 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 24 C -0.20 -9.28 9.97 22.34 0.22 -9.05 16 25 C 0.00 -0.15 6.77 22.55 0.15 0.00 16 26 C 0.09 1.02 7.73 83.27 0.64 1.67 16 27 H 0.06 0.29 6.36 -2.39 -0.02 0.28 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.62 6.12 -2.38 -0.01 0.61 16 32 H 0.07 0.92 7.94 -2.39 -0.02 0.90 16 33 H 0.07 1.59 8.12 -2.39 -0.02 1.58 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.17 1.77 7.98 -2.91 -0.02 1.75 16 36 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.11 5.73 5.62 -2.91 -0.02 5.71 16 39 H 0.29 16.11 8.31 -92.71 -0.77 15.34 16 40 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 41 H 0.12 4.10 7.45 -2.91 -0.02 4.08 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.11 0.71 8.13 -2.39 -0.02 0.69 16 Total: -1.00 -80.95 361.72 4.64 -76.30 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.02 Total: 16.54 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 6.21 Total: -25.84 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -2.72 Total: -73.11 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -1.83 Total: -43.75 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.96 Total: 49.86 kcal Total: -80.95 4.64 -76.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492260454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.957 kcal (2) G-P(sol) polarization free energy of solvation -80.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds