Wall clock time and date at job start Tue Mar 31 2020 10:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 110.80424 * 2 1 4 4 C 1.34781 * 120.00193 * 303.62078 * 3 2 1 5 5 O 1.21725 * 119.99225 * 0.02562 * 4 3 2 6 6 C 1.46257 * 120.00215 * 180.02562 * 4 3 2 7 7 C 1.35017 * 119.99840 * 173.22014 * 6 4 3 8 8 C 1.46961 * 120.00145 * 348.68607 * 7 6 4 9 9 C 1.40025 * 120.10152 * 316.39647 * 8 7 6 10 10 C 1.37598 * 119.90154 * 179.73851 * 9 8 7 11 11 C 1.39182 * 120.09608 * 0.51529 * 10 9 8 12 12 O 1.35573 * 119.89518 * 179.73577 * 11 10 9 13 13 C 1.34779 * 116.99931 * 174.37852 * 12 11 10 14 14 H 1.07999 * 119.99957 * 5.06993 * 13 12 11 15 15 C 1.38720 * 120.00281 * 185.06476 * 13 12 11 16 16 N 1.31507 * 119.99735 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00034 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46881 * 120.00231 * 17 15 13 20 20 H 1.48501 * 109.47225 * 239.99641 * 17 15 13 21 21 C 1.39165 * 120.20520 * 359.76200 * 11 10 9 22 22 C 1.37607 * 120.10304 * 359.97438 * 21 11 10 23 23 C 1.54817 * 110.90670 * 123.62354 * 2 1 3 24 24 C 1.54095 * 104.18636 * 139.11244 * 23 2 1 25 25 O 1.43738 * 107.42297 * 1.95752 * 24 23 2 26 26 C 1.44581 * 106.87059 * 333.67052 * 25 24 23 27 27 H 1.09000 * 109.47110 * 296.38109 * 1 2 3 28 28 H 1.09004 * 109.46808 * 56.37660 * 1 2 3 29 29 H 1.08992 * 109.47243 * 176.37257 * 1 2 3 30 30 H 0.97001 * 120.00403 * 123.62775 * 3 2 1 31 31 H 1.07998 * 119.99913 * 353.21867 * 6 4 3 32 32 H 1.07996 * 120.00125 * 168.68351 * 7 6 4 33 33 H 1.08009 * 120.04829 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.95380 * 180.27472 * 10 9 8 35 35 H 0.96994 * 119.99841 * 179.97438 * 16 15 13 36 36 H 1.08005 * 119.95230 * 180.02562 * 21 11 10 37 37 H 1.07997 * 120.05065 * 180.02562 * 22 21 11 38 38 H 1.09005 * 110.48143 * 20.43556 * 23 2 1 39 39 H 1.08996 * 110.60213 * 257.85310 * 23 2 1 40 40 H 1.09004 * 109.87507 * 121.45548 * 24 23 2 41 41 H 1.08997 * 109.87894 * 242.45743 * 24 23 2 42 42 H 1.08997 * 110.50295 * 281.37656 * 26 25 24 43 43 H 1.09000 * 110.77331 * 158.51028 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0503 1.3694 0.0000 4 6 1.6855 2.2290 -0.9720 5 8 0.9234 1.8674 -1.8495 6 6 2.2054 3.5960 -0.9723 7 6 1.9516 4.4145 -2.0156 8 6 1.3740 3.8707 -3.2527 9 6 1.8575 2.6689 -3.7844 10 6 1.3101 2.1607 -4.9400 11 6 0.2845 2.8448 -5.5860 12 8 -0.2483 2.3430 -6.7272 13 6 -1.3140 2.9890 -7.2406 14 1 -1.6549 3.9102 -6.7915 15 6 -1.9730 2.4708 -8.3458 16 7 -1.5582 1.3490 -8.8924 17 14 -3.4496 3.3666 -9.0577 18 1 -3.7115 4.5958 -8.2667 19 1 -3.1711 3.7364 -10.4687 20 1 -4.6396 2.4799 -9.0040 21 6 -0.1954 4.0425 -5.0644 22 6 0.3424 4.5555 -3.9064 23 6 2.0824 -0.8008 1.2043 24 6 3.2723 -1.5873 0.6209 25 8 3.3963 -1.2170 -0.7624 26 6 2.0839 -0.8022 -1.2050 27 1 -0.3633 0.4566 0.9206 28 1 -0.3633 0.5691 -0.8558 29 1 -0.3633 -1.0255 -0.0650 30 1 2.6575 1.6577 0.6994 31 1 2.7923 3.9507 -0.1380 32 1 2.1730 5.4689 -1.9411 33 1 2.6565 2.1398 -3.2862 34 1 1.6793 1.2316 -5.3484 35 1 -2.0192 0.9864 -9.6649 36 1 -0.9916 4.5697 -5.5689 37 1 -0.0309 5.4848 -3.5021 38 1 1.3247 -1.4841 1.5879 39 1 2.4199 -0.1263 1.9911 40 1 4.1856 -1.3293 1.1570 41 1 3.0846 -2.6579 0.7026 42 1 1.4575 -1.6706 -1.4085 43 1 2.1564 -0.1673 -2.0880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492283484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:00 Heat of formation + Delta-G solvation = -49.644824 kcal Electronic energy + Delta-G solvation = -26511.882537 eV Core-core repulsion = 22716.976961 eV Total energy + Delta-G solvation = -3794.905576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.57093 -39.13887 -38.41878 -36.47988 -34.76868 -33.06677 -32.18884 -31.55518 -30.10440 -29.87974 -27.92632 -26.37063 -25.44003 -23.74846 -22.76570 -21.79282 -21.18306 -19.97112 -19.18379 -17.92652 -17.27480 -16.81305 -16.58426 -15.99575 -15.65192 -14.84443 -14.65001 -14.59163 -14.38731 -14.06671 -13.69497 -13.55454 -13.44879 -13.09270 -12.97648 -12.86644 -12.57709 -12.26040 -12.15729 -11.94205 -11.82005 -11.68291 -11.45904 -11.30494 -11.00603 -10.90483 -10.67620 -10.56739 -10.39177 -9.89138 -9.45144 -9.31182 -9.14569 -8.92083 -8.67920 -7.90096 -6.84516 -6.44760 -4.00434 1.25383 2.43792 2.71271 3.14268 3.15476 3.20648 3.24481 3.59175 3.84037 3.97984 4.14012 4.58965 4.67521 4.71186 4.81613 5.05051 5.12503 5.18723 5.24299 5.35586 5.37053 5.41736 5.50790 5.57718 5.60911 5.65180 5.74826 5.78519 5.84753 5.94463 6.26340 6.27530 6.35634 6.45343 6.57990 6.61553 6.73326 6.80973 7.05156 7.14095 7.38058 7.46847 7.52050 7.68480 7.93806 8.02158 8.54576 9.01066 9.73319 10.73183 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.003212 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.821641 B = 8715.823746 C = 9519.214372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 N -0.721 5.721 4 C 0.543 3.457 5 O -0.508 6.508 6 C -0.268 4.268 7 C 0.029 3.971 8 C -0.189 4.189 9 C 0.013 3.987 10 C -0.203 4.203 11 C 0.172 3.828 12 O -0.173 6.173 13 C -0.389 4.389 14 H 0.094 0.906 15 C 0.039 3.961 16 N -0.859 5.859 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.251 4.251 22 C -0.041 4.041 23 C -0.158 4.158 24 C 0.045 3.955 25 O -0.374 6.374 26 C 0.041 3.959 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.396 0.604 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.270 0.730 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 -0.119 20.912 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 N -0.374 5.374 4 C 0.333 3.667 5 O -0.385 6.385 6 C -0.289 4.289 7 C 0.009 3.991 8 C -0.190 4.190 9 C -0.006 4.006 10 C -0.222 4.222 11 C 0.117 3.883 12 O -0.076 6.076 13 C -0.466 4.466 14 H 0.111 0.889 15 C -0.166 4.166 16 N -0.494 5.494 17 Si 0.766 3.234 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.270 4.270 22 C -0.060 4.060 23 C -0.196 4.196 24 C -0.032 4.032 25 O -0.293 6.293 26 C -0.036 4.036 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.973 -0.756 19.787 20.994 hybrid contribution -0.636 0.562 0.408 0.942 sum 6.337 -0.194 20.195 21.167 Atomic orbital electron populations 1.22119 0.92724 1.02849 1.04151 1.21653 0.94874 0.82530 0.94732 1.45950 1.50270 1.10999 1.30217 1.18468 0.81517 0.85642 0.81051 1.90947 1.34788 1.77676 1.35052 1.22581 1.09730 0.94958 1.01622 1.22326 0.88201 0.97687 0.90893 1.18279 1.03925 0.99162 0.97610 1.20441 0.96158 0.91785 0.92175 1.20008 1.01439 1.02076 0.98669 1.19522 0.91605 0.91293 0.85877 1.83907 1.41661 1.50371 1.31615 1.21440 1.05493 1.07137 1.12484 0.88854 1.25324 0.98871 0.96250 0.96140 1.70032 1.39526 1.18453 1.21384 0.85636 0.79803 0.79004 0.78933 1.19043 1.20129 1.20115 1.20947 1.06556 0.99333 1.00168 1.20735 0.94463 0.97239 0.93527 1.23276 0.98799 0.99609 0.97905 1.23132 0.98234 0.98411 0.83442 1.88962 1.29679 1.86292 1.24375 1.24064 0.83675 0.97724 0.98150 0.92509 0.88920 0.91844 0.77036 0.86271 0.86158 0.88091 0.86867 0.92018 0.85707 0.87687 0.89260 0.89972 0.90042 0.92350 0.91315 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.47 37.16 0.31 -1.53 16 2 C 0.15 1.61 0.93 -129.81 -0.12 1.49 16 3 N -0.72 -7.88 5.18 -47.17 -0.24 -8.12 16 4 C 0.54 7.68 6.14 -13.04 -0.08 7.60 16 5 O -0.51 -9.17 8.98 5.17 0.05 -9.13 16 6 C -0.27 -3.32 9.90 -37.51 -0.37 -3.69 16 7 C 0.03 0.40 9.80 -37.19 -0.36 0.03 16 8 C -0.19 -3.44 4.54 -105.03 -0.48 -3.92 16 9 C 0.01 0.26 6.59 -39.15 -0.26 0.00 16 10 C -0.20 -4.63 9.97 -39.46 -0.39 -5.02 16 11 C 0.17 4.35 6.66 -38.89 -0.26 4.10 16 12 O -0.17 -5.09 9.74 0.74 0.01 -5.08 16 13 C -0.39 -11.11 9.48 30.91 0.29 -10.81 16 14 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 17 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.25 -5.70 9.14 -39.47 -0.36 -6.06 16 22 C -0.04 -0.80 9.78 -39.14 -0.38 -1.18 16 23 C -0.16 -1.20 6.28 -25.20 -0.16 -1.35 16 24 C 0.04 0.39 7.69 37.73 0.29 0.68 16 25 O -0.37 -4.83 11.54 -35.23 -0.41 -5.24 16 26 C 0.04 0.54 6.62 38.21 0.25 0.79 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.40 5.93 -51.93 -0.31 1.10 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.40 3.22 8.29 -40.82 -0.34 2.88 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.10 1.85 7.02 -52.48 -0.37 1.48 16 34 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.82 5.62 -52.48 -0.29 2.53 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.09 0.57 7.86 -51.93 -0.41 0.16 16 39 H 0.08 0.49 7.78 -51.93 -0.40 0.08 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 43 H 0.11 1.70 6.84 -51.93 -0.36 1.35 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -33.45 353.06 -7.39 -40.84 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.68 Total: 8.33 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.17 Total: -17.90 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.51 Total: -32.89 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.35 Total: -19.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.45 -7.39 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492283484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.807 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds