Wall clock time and date at job start Tue Mar 31 2020 10:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 110.80424 * 2 1 4 4 C 1.34781 * 120.00193 * 303.62078 * 3 2 1 5 5 O 1.21725 * 119.99225 * 0.02562 * 4 3 2 6 6 C 1.46257 * 120.00215 * 180.02562 * 4 3 2 7 7 C 1.35017 * 119.99840 * 173.22014 * 6 4 3 8 8 C 1.46961 * 120.00145 * 348.68607 * 7 6 4 9 9 C 1.40025 * 120.10152 * 316.39647 * 8 7 6 10 10 C 1.37598 * 119.90154 * 179.73851 * 9 8 7 11 11 C 1.39182 * 120.09608 * 0.51529 * 10 9 8 12 12 O 1.35573 * 119.89518 * 179.73577 * 11 10 9 13 13 C 1.34779 * 116.99931 * 174.37852 * 12 11 10 14 14 H 1.07999 * 119.99957 * 5.06993 * 13 12 11 15 15 C 1.38720 * 120.00281 * 185.06476 * 13 12 11 16 16 N 1.31507 * 119.99735 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00034 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46881 * 120.00231 * 17 15 13 20 20 H 1.48501 * 109.47225 * 239.99641 * 17 15 13 21 21 C 1.39165 * 120.20520 * 359.76200 * 11 10 9 22 22 C 1.37607 * 120.10304 * 359.97438 * 21 11 10 23 23 C 1.54817 * 110.90670 * 123.62354 * 2 1 3 24 24 C 1.54095 * 104.18636 * 139.11244 * 23 2 1 25 25 O 1.43738 * 107.42297 * 1.95752 * 24 23 2 26 26 C 1.44581 * 106.87059 * 333.67052 * 25 24 23 27 27 H 1.09000 * 109.47110 * 296.38109 * 1 2 3 28 28 H 1.09004 * 109.46808 * 56.37660 * 1 2 3 29 29 H 1.08992 * 109.47243 * 176.37257 * 1 2 3 30 30 H 0.97001 * 120.00403 * 123.62775 * 3 2 1 31 31 H 1.07998 * 119.99913 * 353.21867 * 6 4 3 32 32 H 1.07996 * 120.00125 * 168.68351 * 7 6 4 33 33 H 1.08009 * 120.04829 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.95380 * 180.27472 * 10 9 8 35 35 H 0.96994 * 119.99841 * 179.97438 * 16 15 13 36 36 H 1.08005 * 119.95230 * 180.02562 * 21 11 10 37 37 H 1.07997 * 120.05065 * 180.02562 * 22 21 11 38 38 H 1.09005 * 110.48143 * 20.43556 * 23 2 1 39 39 H 1.08996 * 110.60213 * 257.85310 * 23 2 1 40 40 H 1.09004 * 109.87507 * 121.45548 * 24 23 2 41 41 H 1.08997 * 109.87894 * 242.45743 * 24 23 2 42 42 H 1.08997 * 110.50295 * 281.37656 * 26 25 24 43 43 H 1.09000 * 110.77331 * 158.51028 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0503 1.3694 0.0000 4 6 1.6855 2.2290 -0.9720 5 8 0.9234 1.8674 -1.8495 6 6 2.2054 3.5960 -0.9723 7 6 1.9516 4.4145 -2.0156 8 6 1.3740 3.8707 -3.2527 9 6 1.8575 2.6689 -3.7844 10 6 1.3101 2.1607 -4.9400 11 6 0.2845 2.8448 -5.5860 12 8 -0.2483 2.3430 -6.7272 13 6 -1.3140 2.9890 -7.2406 14 1 -1.6549 3.9102 -6.7915 15 6 -1.9730 2.4708 -8.3458 16 7 -1.5582 1.3490 -8.8924 17 14 -3.4496 3.3666 -9.0577 18 1 -3.7115 4.5958 -8.2667 19 1 -3.1711 3.7364 -10.4687 20 1 -4.6396 2.4799 -9.0040 21 6 -0.1954 4.0425 -5.0644 22 6 0.3424 4.5555 -3.9064 23 6 2.0824 -0.8008 1.2043 24 6 3.2723 -1.5873 0.6209 25 8 3.3963 -1.2170 -0.7624 26 6 2.0839 -0.8022 -1.2050 27 1 -0.3633 0.4566 0.9206 28 1 -0.3633 0.5691 -0.8558 29 1 -0.3633 -1.0255 -0.0650 30 1 2.6575 1.6577 0.6994 31 1 2.7923 3.9507 -0.1380 32 1 2.1730 5.4689 -1.9411 33 1 2.6565 2.1398 -3.2862 34 1 1.6793 1.2316 -5.3484 35 1 -2.0192 0.9864 -9.6649 36 1 -0.9916 4.5697 -5.5689 37 1 -0.0309 5.4848 -3.5021 38 1 1.3247 -1.4841 1.5879 39 1 2.4199 -0.1263 1.9911 40 1 4.1856 -1.3293 1.1570 41 1 3.0846 -2.6579 0.7026 42 1 1.4575 -1.6706 -1.4085 43 1 2.1564 -0.1673 -2.0880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492283484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:59 Heat of formation + Delta-G solvation = -73.749249 kcal Electronic energy + Delta-G solvation = -26512.927783 eV Core-core repulsion = 22716.976961 eV Total energy + Delta-G solvation = -3795.950822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59494 -40.72333 -39.72874 -38.12425 -35.83548 -34.58053 -33.95435 -32.58238 -31.81372 -30.69660 -29.46466 -27.43308 -27.32716 -24.98056 -23.72787 -23.42837 -22.59502 -20.98468 -20.42159 -19.75499 -18.88341 -18.07234 -17.73887 -16.86293 -16.61402 -16.36388 -16.28690 -16.03654 -15.76321 -15.49017 -15.16069 -14.98127 -14.65349 -14.54525 -14.17672 -14.14915 -13.78168 -13.68351 -13.56004 -13.23646 -13.06660 -12.81605 -12.56434 -12.54568 -12.36940 -12.28433 -12.21148 -12.09110 -11.73136 -11.22745 -10.92764 -10.77049 -10.50903 -10.35425 -9.96494 -9.54028 -8.53625 -8.48083 -6.15657 0.01201 0.72271 1.13854 1.33356 1.44675 1.52775 2.16923 2.31697 2.49337 2.87417 2.96746 3.21591 3.35190 3.52898 3.75802 3.97077 4.00807 4.07307 4.14936 4.16495 4.18032 4.28482 4.50685 4.56090 4.61831 4.69539 4.72723 4.77461 4.77994 4.85057 4.95869 5.02096 5.06504 5.10384 5.25998 5.28355 5.31650 5.47406 5.63724 5.68921 5.73378 5.84951 5.88163 6.02896 6.25766 6.76134 6.95588 7.49575 7.78229 8.75083 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.003212 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.821641 B = 8715.823746 C = 9519.214372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 N -0.703 5.703 4 C 0.527 3.473 5 O -0.555 6.555 6 C -0.231 4.231 7 C 0.003 3.997 8 C -0.157 4.157 9 C 0.017 3.983 10 C -0.220 4.220 11 C 0.128 3.872 12 O -0.232 6.232 13 C -0.414 4.414 14 H 0.103 0.897 15 C -0.025 4.025 16 N -0.921 5.921 17 Si 1.022 2.978 18 H -0.250 1.250 19 H -0.266 1.266 20 H -0.268 1.268 21 C -0.258 4.258 22 C -0.047 4.047 23 C -0.143 4.143 24 C 0.036 3.964 25 O -0.399 6.399 26 C 0.039 3.961 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.414 0.586 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.273 0.727 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 2.125 25.934 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 N -0.357 5.357 4 C 0.318 3.682 5 O -0.435 6.435 6 C -0.252 4.252 7 C -0.016 4.016 8 C -0.158 4.158 9 C -0.001 4.001 10 C -0.240 4.240 11 C 0.078 3.922 12 O -0.139 6.139 13 C -0.490 4.490 14 H 0.120 0.880 15 C -0.222 4.222 16 N -0.559 5.559 17 Si 0.841 3.159 18 H -0.173 1.173 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.277 4.277 22 C -0.065 4.065 23 C -0.181 4.181 24 C -0.040 4.040 25 O -0.319 6.319 26 C -0.039 4.039 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.252 0.748 31 H 0.189 0.811 32 H 0.185 0.815 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.023 1.506 24.915 26.219 hybrid contribution -0.637 -0.186 -0.635 0.919 sum 7.386 1.320 24.280 25.413 Atomic orbital electron populations 1.22040 0.93301 1.03010 1.03033 1.21673 0.94403 0.82522 0.95358 1.45821 1.49561 1.10625 1.29645 1.19055 0.81177 0.86938 0.81029 1.90971 1.36880 1.78727 1.36890 1.23078 1.06772 0.92901 1.02422 1.22549 0.89705 1.00153 0.89182 1.18841 1.01494 0.97070 0.98393 1.20606 0.96196 0.92593 0.90735 1.20150 1.01816 1.02011 1.00018 1.19980 0.92995 0.93025 0.86237 1.83876 1.43406 1.52432 1.34142 1.21926 1.06084 1.07777 1.13255 0.88004 1.26676 1.02162 0.97159 0.96188 1.70184 1.41997 1.20999 1.22750 0.84491 0.75140 0.78030 0.78262 1.17333 1.19074 1.19323 1.21077 1.06619 0.98508 1.01529 1.21168 0.94236 0.98761 0.92290 1.23256 0.98515 0.99615 0.96725 1.23422 0.99809 0.99331 0.81449 1.88933 1.29375 1.86568 1.27015 1.23928 0.84310 0.97581 0.98049 0.90804 0.93039 0.90802 0.74801 0.81093 0.81539 0.86742 0.88445 0.91789 0.86314 0.83475 0.87542 0.87159 0.88022 0.91396 0.91480 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.47 71.98 0.61 -2.77 16 2 C 0.15 2.87 0.93 4.90 0.00 2.87 16 3 N -0.70 -12.90 5.18 -421.36 -2.18 -15.09 16 4 C 0.53 13.41 6.14 86.33 0.53 13.94 16 5 O -0.55 -19.88 8.98 -4.43 -0.04 -19.91 16 6 C -0.23 -4.45 9.90 23.61 0.23 -4.22 16 7 C 0.00 0.08 9.80 23.82 0.23 0.31 16 8 C -0.16 -5.43 4.54 -20.13 -0.09 -5.52 16 9 C 0.02 0.68 6.59 22.55 0.15 0.83 16 10 C -0.22 -10.88 9.97 22.35 0.22 -10.66 16 11 C 0.13 7.03 6.66 22.72 0.15 7.19 16 12 O -0.23 -15.00 9.74 -20.27 -0.20 -15.20 16 13 C -0.41 -25.44 9.48 67.94 0.64 -24.80 16 14 H 0.10 5.75 5.18 -2.91 -0.02 5.74 16 15 C -0.02 -1.46 5.49 84.86 0.47 -0.99 16 16 N -0.92 -58.83 13.67 21.62 0.30 -58.53 16 17 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 C -0.26 -12.19 9.14 22.34 0.20 -11.99 16 22 C -0.05 -1.73 9.78 22.55 0.22 -1.51 16 23 C -0.14 -1.58 6.28 31.58 0.20 -1.38 16 24 C 0.04 0.52 7.69 72.35 0.56 1.07 16 25 O -0.40 -9.89 11.54 -148.98 -1.72 -11.61 16 26 C 0.04 1.02 6.62 72.66 0.48 1.50 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.59 5.93 -2.39 -0.01 1.57 16 29 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.41 4.51 8.29 -92.71 -0.77 3.74 16 31 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.11 4.21 7.02 -2.91 -0.02 4.19 16 34 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.12 5.63 5.62 -2.91 -0.02 5.61 16 37 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.11 0.88 7.86 -2.38 -0.02 0.86 16 39 H 0.11 0.65 7.78 -2.39 -0.02 0.63 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 43 H 0.07 2.34 6.84 -2.39 -0.02 2.33 16 Total: -1.00 -84.22 353.06 3.27 -80.95 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.27 Total: 28.99 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 4.81 Total: -36.13 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.89 Total: -73.62 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -1.96 Total: -46.72 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -84.22 3.27 -80.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492283484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.202 kcal (2) G-P(sol) polarization free energy of solvation -84.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds