Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 110.45721 * 2 1 4 4 C 1.34782 * 120.00037 * 57.40341 * 3 2 1 5 5 O 1.21721 * 119.99374 * 359.97438 * 4 3 2 6 6 C 1.46246 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.35022 * 120.00020 * 186.78551 * 6 4 3 8 8 C 1.46965 * 119.99834 * 11.37265 * 7 6 4 9 9 C 1.40023 * 120.09905 * 43.47425 * 8 7 6 10 10 C 1.37601 * 119.90193 * 179.97438 * 9 8 7 11 11 C 1.39181 * 120.09670 * 0.24875 * 10 9 8 12 12 O 1.35564 * 119.89999 * 179.74366 * 11 10 9 13 13 C 1.34788 * 116.99479 * 5.79372 * 12 11 10 14 14 H 1.07992 * 120.00240 * 5.29300 * 13 12 11 15 15 C 1.38723 * 119.99481 * 185.29006 * 13 12 11 16 16 N 1.31515 * 119.99693 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00296 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46998 * 90.00149 * 17 15 13 19 19 H 1.48499 * 109.46929 * 209.99813 * 17 15 13 20 20 H 1.48503 * 109.47093 * 330.00117 * 17 15 13 21 21 C 1.39179 * 120.20194 * 359.49436 * 11 10 9 22 22 C 1.37598 * 120.10359 * 0.50647 * 21 11 10 23 23 C 1.54514 * 110.50828 * 237.39749 * 2 1 3 24 24 C 1.54477 * 104.06630 * 241.21661 * 23 2 1 25 25 O 1.44425 * 104.79865 * 23.98055 * 24 23 2 26 26 C 1.44425 * 105.28013 * 319.48558 * 25 24 23 27 27 H 1.09000 * 109.47798 * 60.69445 * 1 2 3 28 28 H 1.08998 * 109.47674 * 180.69900 * 1 2 3 29 29 H 1.09002 * 109.47149 * 300.69737 * 1 2 3 30 30 H 0.97002 * 120.00215 * 237.39729 * 3 2 1 31 31 H 1.07993 * 120.00427 * 6.78248 * 6 4 3 32 32 H 1.08001 * 120.00616 * 191.38063 * 7 6 4 33 33 H 1.08002 * 120.05293 * 359.95198 * 9 8 7 34 34 H 1.07989 * 119.95293 * 179.97438 * 10 9 8 35 35 H 0.97001 * 119.99851 * 179.97438 * 16 15 13 36 36 H 1.07997 * 119.95048 * 180.25296 * 21 11 10 37 37 H 1.08002 * 120.05230 * 179.76621 * 22 21 11 38 38 H 1.09002 * 110.51275 * 359.86959 * 23 2 1 39 39 H 1.09007 * 110.50954 * 122.56929 * 23 2 1 40 40 H 1.08991 * 110.37174 * 142.80956 * 24 23 2 41 41 H 1.08998 * 110.37143 * 265.04029 * 24 23 2 42 42 H 1.09000 * 110.37489 * 281.68999 * 26 25 24 43 43 H 1.09000 * 110.37701 * 159.33957 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0419 1.3726 0.0000 4 6 1.6883 2.2238 0.9834 5 8 0.9432 1.8520 1.8712 6 6 2.1999 3.5938 0.9837 7 6 1.9588 4.4042 2.0364 8 6 1.4066 3.8488 3.2800 9 6 1.9056 2.6459 3.7942 10 6 1.3860 2.1298 4.9591 11 6 0.3622 2.7990 5.6233 12 8 -0.1504 2.2843 6.7679 13 6 0.4545 1.1900 7.2713 14 1 1.3574 0.8136 6.8139 15 6 -0.0830 0.5473 8.3769 16 7 0.5068 -0.5208 8.8678 17 14 -1.6453 1.1980 9.1676 18 1 -2.8252 0.5579 8.5325 19 1 -1.6333 0.8841 10.6190 20 1 -1.7194 2.6693 8.9799 21 6 -0.1333 3.9978 5.1188 22 6 0.3802 4.5214 3.9546 23 6 2.0713 -0.7798 -1.2192 24 6 2.8786 -1.9394 -0.5948 25 8 2.3118 -2.1167 0.7216 26 6 2.0742 -0.7809 1.2167 27 1 -0.3635 0.5030 -0.8961 28 1 -0.3634 -1.0275 0.0125 29 1 -0.3633 0.5246 0.8837 30 1 2.6355 1.6688 -0.7077 31 1 2.7706 3.9574 0.1420 32 1 2.1716 5.4607 1.9646 33 1 2.6970 2.1236 3.2771 34 1 1.7700 1.2019 5.3562 35 1 0.1312 -0.9700 9.6411 36 1 -0.9249 4.5158 5.6397 37 1 -0.0076 5.4497 3.5618 38 1 1.2489 -1.1672 -1.8206 39 1 2.7198 -0.1439 -1.8219 40 1 2.7573 -2.8473 -1.1856 41 1 3.9329 -1.6723 -0.5231 42 1 3.0048 -0.3353 1.5680 43 1 1.3350 -0.7988 2.0176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492283485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = -46.956815 kcal Electronic energy + Delta-G solvation = -26667.848295 eV Core-core repulsion = 22873.059280 eV Total energy + Delta-G solvation = -3794.789015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.58110 -39.27285 -38.56295 -36.65818 -34.87289 -33.12675 -32.30788 -31.42519 -30.16600 -29.85008 -28.21052 -26.43687 -25.27956 -23.72338 -22.94343 -21.92125 -21.12752 -19.94373 -19.15922 -17.90578 -17.48040 -16.85616 -16.75206 -16.00805 -15.36416 -14.97214 -14.80790 -14.40758 -14.33196 -14.12897 -13.82923 -13.71083 -13.64906 -13.37469 -12.94618 -12.64362 -12.42595 -12.31185 -12.26665 -12.14716 -11.95374 -11.64090 -11.39340 -11.18640 -11.09924 -10.91030 -10.77741 -10.67626 -10.13578 -9.89009 -9.51274 -9.37467 -9.25865 -9.02706 -8.74406 -7.98244 -7.00057 -6.41059 -4.04729 1.16076 2.32504 2.60454 3.15563 3.23756 3.27979 3.41968 3.54952 3.96687 4.18960 4.25062 4.55899 4.62406 4.68345 4.90719 4.92640 5.02976 5.07489 5.12790 5.15135 5.31006 5.44808 5.52398 5.62525 5.65142 5.68138 5.72729 5.75019 5.79866 5.99475 6.18386 6.20898 6.32352 6.34962 6.43814 6.54771 6.63819 6.75072 6.91953 7.16382 7.29729 7.41815 7.61750 7.67405 7.85095 8.06929 8.48457 8.93943 9.57749 10.66286 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.003922 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.341731 B = 7137.707826 C = 8666.581545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 N -0.727 5.727 4 C 0.540 3.460 5 O -0.505 6.505 6 C -0.264 4.264 7 C 0.026 3.974 8 C -0.182 4.182 9 C 0.015 3.985 10 C -0.231 4.231 11 C 0.177 3.823 12 O -0.212 6.212 13 C -0.387 4.387 14 H 0.107 0.893 15 C 0.064 3.936 16 N -0.876 5.876 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.210 4.210 22 C -0.047 4.047 23 C -0.157 4.157 24 C 0.044 3.956 25 O -0.370 6.370 26 C 0.045 3.955 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.395 0.605 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.280 0.720 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 4.702 -21.462 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 N -0.381 5.381 4 C 0.330 3.670 5 O -0.381 6.381 6 C -0.286 4.286 7 C 0.006 3.994 8 C -0.183 4.183 9 C -0.004 4.004 10 C -0.250 4.250 11 C 0.124 3.876 12 O -0.116 6.116 13 C -0.462 4.462 14 H 0.125 0.875 15 C -0.140 4.140 16 N -0.513 5.513 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.229 4.229 22 C -0.065 4.065 23 C -0.195 4.195 24 C -0.033 4.033 25 O -0.288 6.288 26 C -0.032 4.032 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.181 4.080 -20.357 21.179 hybrid contribution -0.104 0.353 -0.331 0.495 sum 4.077 4.434 -20.688 21.547 Atomic orbital electron populations 1.22182 0.92786 1.02741 1.03820 1.21578 0.95412 0.81976 0.94867 1.46156 1.51544 1.11338 1.29086 1.18500 0.81444 0.85759 0.81275 1.90961 1.35180 1.77245 1.34698 1.22612 1.09672 0.94882 1.01389 1.22340 0.88276 0.97819 0.90923 1.18345 1.03712 0.98958 0.97266 1.20584 0.95964 0.91451 0.92355 1.21070 1.02153 1.03178 0.98619 1.19293 0.91282 0.91778 0.85248 1.83515 1.52624 1.42095 1.33382 1.20824 1.09532 1.03148 1.12742 0.87519 1.24495 0.98864 0.94659 0.95968 1.69632 1.40081 1.17738 1.23847 0.86185 0.82134 0.80651 0.77980 1.19844 1.20737 1.18286 1.19988 1.06091 0.97060 0.99762 1.20619 0.94979 0.97643 0.93272 1.23260 1.00996 0.97823 0.97450 1.23372 0.96768 0.98436 0.84768 1.89199 1.82921 1.26239 1.30482 1.23869 1.00950 0.81810 0.96607 0.92756 0.91596 0.89330 0.77036 0.86138 0.85978 0.88349 0.85229 0.90995 0.86698 0.87058 0.89479 0.90066 0.88988 0.92276 0.92016 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.18 37.15 0.30 -1.64 16 2 C 0.15 1.66 1.02 -130.25 -0.13 1.53 16 3 N -0.73 -7.56 5.11 -47.58 -0.24 -7.80 16 4 C 0.54 7.36 6.26 -13.04 -0.08 7.27 16 5 O -0.50 -8.99 9.53 5.17 0.05 -8.94 16 6 C -0.26 -3.06 9.90 -37.51 -0.37 -3.44 16 7 C 0.03 0.34 9.80 -37.19 -0.36 -0.03 16 8 C -0.18 -3.14 4.54 -105.02 -0.48 -3.62 16 9 C 0.02 0.29 6.59 -39.15 -0.26 0.03 16 10 C -0.23 -5.28 9.11 -39.46 -0.36 -5.64 16 11 C 0.18 4.26 6.66 -38.88 -0.26 4.00 16 12 O -0.21 -5.76 8.57 0.74 0.01 -5.75 16 13 C -0.39 -11.16 9.90 30.91 0.31 -10.86 16 14 H 0.11 3.16 5.50 -52.49 -0.29 2.87 16 15 C 0.06 1.82 5.49 -17.51 -0.10 1.73 16 16 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 17 Si 0.91 22.03 28.62 -169.99 -4.86 17.17 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.21 -4.33 9.97 -39.47 -0.39 -4.72 16 22 C -0.05 -0.82 9.78 -39.14 -0.38 -1.21 16 23 C -0.16 -1.26 6.52 -25.16 -0.16 -1.43 16 24 C 0.04 0.40 7.63 37.93 0.29 0.69 16 25 O -0.37 -5.10 11.65 -35.23 -0.41 -5.51 16 26 C 0.05 0.63 5.97 37.94 0.23 0.86 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.39 6.05 -51.93 -0.31 1.07 16 30 H 0.40 2.84 8.11 -40.82 -0.33 2.51 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.10 1.79 7.01 -52.49 -0.37 1.42 16 34 H 0.13 3.15 5.69 -52.49 -0.30 2.85 16 35 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 39 H 0.08 0.47 7.53 -51.93 -0.39 0.08 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 43 H 0.11 1.77 7.83 -51.93 -0.41 1.36 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -32.58 352.72 -7.32 -39.90 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.74 Total: 6.96 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.21 Total: -16.46 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.53 Total: -32.68 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.35 Total: -20.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.58 -7.32 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492283485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.057 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds