Wall clock time and date at job start Tue Mar 31 2020 10:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 110.45721 * 2 1 4 4 C 1.34782 * 120.00037 * 57.40341 * 3 2 1 5 5 O 1.21721 * 119.99374 * 359.97438 * 4 3 2 6 6 C 1.46246 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.35022 * 120.00020 * 186.78551 * 6 4 3 8 8 C 1.46965 * 119.99834 * 11.37265 * 7 6 4 9 9 C 1.40023 * 120.09905 * 43.47425 * 8 7 6 10 10 C 1.37601 * 119.90193 * 179.97438 * 9 8 7 11 11 C 1.39181 * 120.09670 * 0.24875 * 10 9 8 12 12 O 1.35564 * 119.89999 * 179.74366 * 11 10 9 13 13 C 1.34788 * 116.99479 * 5.79372 * 12 11 10 14 14 H 1.07992 * 120.00240 * 5.29300 * 13 12 11 15 15 C 1.38723 * 119.99481 * 185.29006 * 13 12 11 16 16 N 1.31515 * 119.99693 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00296 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46998 * 90.00149 * 17 15 13 19 19 H 1.48499 * 109.46929 * 209.99813 * 17 15 13 20 20 H 1.48503 * 109.47093 * 330.00117 * 17 15 13 21 21 C 1.39179 * 120.20194 * 359.49436 * 11 10 9 22 22 C 1.37598 * 120.10359 * 0.50647 * 21 11 10 23 23 C 1.54514 * 110.50828 * 237.39749 * 2 1 3 24 24 C 1.54477 * 104.06630 * 241.21661 * 23 2 1 25 25 O 1.44425 * 104.79865 * 23.98055 * 24 23 2 26 26 C 1.44425 * 105.28013 * 319.48558 * 25 24 23 27 27 H 1.09000 * 109.47798 * 60.69445 * 1 2 3 28 28 H 1.08998 * 109.47674 * 180.69900 * 1 2 3 29 29 H 1.09002 * 109.47149 * 300.69737 * 1 2 3 30 30 H 0.97002 * 120.00215 * 237.39729 * 3 2 1 31 31 H 1.07993 * 120.00427 * 6.78248 * 6 4 3 32 32 H 1.08001 * 120.00616 * 191.38063 * 7 6 4 33 33 H 1.08002 * 120.05293 * 359.95198 * 9 8 7 34 34 H 1.07989 * 119.95293 * 179.97438 * 10 9 8 35 35 H 0.97001 * 119.99851 * 179.97438 * 16 15 13 36 36 H 1.07997 * 119.95048 * 180.25296 * 21 11 10 37 37 H 1.08002 * 120.05230 * 179.76621 * 22 21 11 38 38 H 1.09002 * 110.51275 * 359.86959 * 23 2 1 39 39 H 1.09007 * 110.50954 * 122.56929 * 23 2 1 40 40 H 1.08991 * 110.37174 * 142.80956 * 24 23 2 41 41 H 1.08998 * 110.37143 * 265.04029 * 24 23 2 42 42 H 1.09000 * 110.37489 * 281.68999 * 26 25 24 43 43 H 1.09000 * 110.37701 * 159.33957 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0419 1.3726 0.0000 4 6 1.6883 2.2238 0.9834 5 8 0.9432 1.8520 1.8712 6 6 2.1999 3.5938 0.9837 7 6 1.9588 4.4042 2.0364 8 6 1.4066 3.8488 3.2800 9 6 1.9056 2.6459 3.7942 10 6 1.3860 2.1298 4.9591 11 6 0.3622 2.7990 5.6233 12 8 -0.1504 2.2843 6.7679 13 6 0.4545 1.1900 7.2713 14 1 1.3574 0.8136 6.8139 15 6 -0.0830 0.5473 8.3769 16 7 0.5068 -0.5208 8.8678 17 14 -1.6453 1.1980 9.1676 18 1 -2.8252 0.5579 8.5325 19 1 -1.6333 0.8841 10.6190 20 1 -1.7194 2.6693 8.9799 21 6 -0.1333 3.9978 5.1188 22 6 0.3802 4.5214 3.9546 23 6 2.0713 -0.7798 -1.2192 24 6 2.8786 -1.9394 -0.5948 25 8 2.3118 -2.1167 0.7216 26 6 2.0742 -0.7809 1.2167 27 1 -0.3635 0.5030 -0.8961 28 1 -0.3634 -1.0275 0.0125 29 1 -0.3633 0.5246 0.8837 30 1 2.6355 1.6688 -0.7077 31 1 2.7706 3.9574 0.1420 32 1 2.1716 5.4607 1.9646 33 1 2.6970 2.1236 3.2771 34 1 1.7700 1.2019 5.3562 35 1 0.1312 -0.9700 9.6411 36 1 -0.9249 4.5158 5.6397 37 1 -0.0076 5.4497 3.5618 38 1 1.2489 -1.1672 -1.8206 39 1 2.7198 -0.1439 -1.8219 40 1 2.7573 -2.8473 -1.1856 41 1 3.9329 -1.6723 -0.5231 42 1 3.0048 -0.3353 1.5680 43 1 1.3350 -0.7988 2.0176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492283485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:03 Heat of formation + Delta-G solvation = -70.398185 kcal Electronic energy + Delta-G solvation = -26668.864789 eV Core-core repulsion = 22873.059280 eV Total energy + Delta-G solvation = -3795.805509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62778 -40.83825 -39.84665 -38.24044 -35.97092 -34.64572 -34.10937 -32.45255 -31.79682 -30.73411 -29.69237 -27.53286 -27.21064 -24.96173 -23.90348 -23.46652 -22.55839 -20.95610 -20.28429 -19.86192 -19.20820 -18.07097 -17.77963 -17.00783 -16.68110 -16.34646 -16.20501 -15.84773 -15.69454 -15.51073 -15.44484 -15.06781 -14.80247 -14.58454 -14.42509 -14.13344 -13.98917 -13.90499 -13.46061 -13.30990 -13.13247 -12.93778 -12.61114 -12.48172 -12.42285 -12.30870 -12.04864 -11.99370 -11.94288 -11.35351 -11.02057 -10.86189 -10.56571 -10.42554 -10.06808 -9.56736 -8.60256 -8.53276 -6.24439 -0.01927 0.69680 1.10660 1.27614 1.34634 1.49518 2.22841 2.25755 2.47597 2.78873 3.06620 3.11483 3.18087 3.34182 3.71542 3.77393 3.99685 4.04009 4.11648 4.16681 4.20260 4.21626 4.54468 4.58793 4.61558 4.66466 4.68820 4.71169 4.74490 4.79323 4.91151 4.98926 5.02443 5.19099 5.24512 5.29161 5.33843 5.48583 5.51468 5.65646 5.77483 5.80844 5.85820 5.90589 6.27800 6.73899 6.80607 7.47693 7.56068 8.58835 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.003922 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.341731 B = 7137.707826 C = 8666.581545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 N -0.705 5.705 4 C 0.524 3.476 5 O -0.555 6.555 6 C -0.229 4.229 7 C 0.003 3.997 8 C -0.151 4.151 9 C 0.011 3.989 10 C -0.251 4.251 11 C 0.131 3.869 12 O -0.243 6.243 13 C -0.401 4.401 14 H 0.074 0.926 15 C 0.009 3.991 16 N -0.923 5.923 17 Si 0.974 3.026 18 H -0.268 1.268 19 H -0.262 1.262 20 H -0.260 1.260 21 C -0.210 4.210 22 C -0.046 4.046 23 C -0.143 4.143 24 C 0.034 3.966 25 O -0.400 6.400 26 C 0.047 3.953 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.418 0.582 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.286 0.714 36 H 0.128 0.872 37 H 0.162 0.838 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 7.946 -26.352 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.063 3.937 3 N -0.361 5.361 4 C 0.315 3.685 5 O -0.434 6.434 6 C -0.250 4.250 7 C -0.016 4.016 8 C -0.152 4.152 9 C -0.008 4.008 10 C -0.270 4.270 11 C 0.082 3.918 12 O -0.150 6.150 13 C -0.477 4.477 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.187 1.187 20 H -0.184 1.184 21 C -0.229 4.229 22 C -0.064 4.064 23 C -0.180 4.180 24 C -0.042 4.042 25 O -0.319 6.319 26 C -0.031 4.031 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.256 0.744 31 H 0.192 0.808 32 H 0.190 0.810 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.179 0.821 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.775 7.351 -25.342 26.815 hybrid contribution -0.069 -0.580 0.665 0.885 sum 4.706 6.771 -24.677 26.018 Atomic orbital electron populations 1.22096 0.93818 1.02307 1.02837 1.21499 0.94637 0.82411 0.95143 1.45963 1.50855 1.10498 1.28753 1.19178 0.81026 0.87175 0.81125 1.90992 1.37439 1.78377 1.36632 1.23090 1.06855 0.92540 1.02497 1.22606 0.89597 1.00352 0.89016 1.18925 1.01415 0.96605 0.98211 1.20691 0.96289 0.92746 0.91053 1.20997 1.03107 1.02570 1.00372 1.19831 0.92764 0.93580 0.85623 1.83450 1.53767 1.42229 1.35534 1.20688 1.09282 1.04234 1.13490 0.90874 1.25344 1.02251 0.94916 0.96374 1.69722 1.42124 1.19431 1.25087 0.85184 0.77825 0.79657 0.77804 1.19324 1.18658 1.18425 1.20365 1.06104 0.95579 1.00827 1.21183 0.94221 0.99130 0.91872 1.23237 1.01718 0.97111 0.95964 1.23715 0.97493 1.00196 0.82842 1.89168 1.83564 1.26080 1.33122 1.23673 0.99426 0.82909 0.97120 0.90633 0.91844 0.93227 0.74391 0.80763 0.81023 0.87633 0.88862 0.90484 0.85398 0.82053 0.88121 0.86505 0.86987 0.90996 0.92807 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 8.18 71.98 0.59 -3.11 16 2 C 0.15 3.12 1.02 4.62 0.00 3.13 16 3 N -0.71 -12.21 5.11 -422.65 -2.16 -14.36 16 4 C 0.52 12.79 6.26 86.32 0.54 13.33 16 5 O -0.55 -19.78 9.53 -4.41 -0.04 -19.82 16 6 C -0.23 -3.96 9.90 23.61 0.23 -3.72 16 7 C 0.00 0.07 9.80 23.82 0.23 0.30 16 8 C -0.15 -4.85 4.54 -20.12 -0.09 -4.94 16 9 C 0.01 0.42 6.59 22.55 0.15 0.57 16 10 C -0.25 -12.56 9.11 22.35 0.20 -12.36 16 11 C 0.13 6.76 6.66 22.72 0.15 6.91 16 12 O -0.24 -14.23 8.57 -20.27 -0.17 -14.40 16 13 C -0.40 -25.40 9.90 67.94 0.67 -24.73 16 14 H 0.07 4.94 5.50 -2.91 -0.02 4.92 16 15 C 0.01 0.58 5.49 84.86 0.47 1.05 16 16 N -0.92 -57.98 13.96 21.62 0.30 -57.68 16 17 Si 0.97 47.85 28.62 68.60 1.96 49.81 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.21 -8.69 9.97 22.34 0.22 -8.46 16 22 C -0.05 -1.50 9.78 22.55 0.22 -1.28 16 23 C -0.14 -1.75 6.52 31.61 0.21 -1.54 16 24 C 0.03 0.54 7.63 72.48 0.55 1.09 16 25 O -0.40 -11.25 11.65 -148.98 -1.74 -12.99 16 26 C 0.05 1.37 5.97 72.49 0.43 1.80 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.62 6.05 -2.39 -0.01 1.60 16 30 H 0.42 3.60 8.11 -92.71 -0.75 2.84 16 31 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.11 3.95 7.01 -2.91 -0.02 3.93 16 34 H 0.09 5.24 5.69 -2.92 -0.02 5.22 16 35 H 0.29 16.35 8.31 -92.71 -0.77 15.58 16 36 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.10 1.04 7.73 -2.39 -0.02 1.02 16 39 H 0.12 0.64 7.53 -2.38 -0.02 0.63 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 43 H 0.06 2.36 7.83 -2.39 -0.02 2.34 16 Total: -1.00 -83.20 352.72 3.23 -79.97 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.28 Total: 21.44 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 4.79 Total: -31.97 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.86 Total: -72.04 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.95 Total: -47.21 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.96 Total: 49.81 kcal Total: -83.20 3.23 -79.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492283485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.569 kcal (2) G-P(sol) polarization free energy of solvation -83.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds