Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99815 * 2 1 4 4 C 1.52999 * 109.47290 * 124.72441 * 3 2 1 5 5 H 1.08997 * 109.47285 * 54.99471 * 4 3 2 6 6 C 1.53003 * 109.47115 * 175.00152 * 4 3 2 7 7 O 1.42895 * 109.47281 * 54.99879 * 6 4 3 8 8 N 1.46502 * 109.46891 * 294.99673 * 4 3 2 9 9 C 1.34775 * 120.00000 * 155.00077 * 8 4 3 10 10 O 1.21721 * 120.00056 * 0.02562 * 9 8 4 11 11 C 1.46260 * 120.00095 * 180.02562 * 9 8 4 12 12 C 1.35014 * 120.00107 * 173.21393 * 11 9 8 13 13 C 1.46960 * 120.00251 * 348.67932 * 12 11 9 14 14 C 1.40031 * 120.09685 * 316.40948 * 13 12 11 15 15 C 1.37600 * 119.89314 * 179.69040 * 14 13 12 16 16 C 1.39180 * 120.10199 * 0.60610 * 15 14 13 17 17 O 1.35574 * 119.89817 * 179.69131 * 16 15 14 18 18 C 1.34784 * 116.99812 * 174.33254 * 17 16 15 19 19 H 1.07997 * 119.99966 * 5.06672 * 18 17 16 20 20 C 1.38721 * 119.99661 * 185.05893 * 18 17 16 21 21 N 1.31502 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99578 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46942 * 90.00449 * 22 20 18 24 24 H 1.48505 * 109.46835 * 210.00084 * 22 20 18 25 25 H 1.48496 * 109.47407 * 330.00279 * 22 20 18 26 26 C 1.39175 * 120.20293 * 359.66872 * 16 15 14 27 27 C 1.37594 * 120.10301 * 0.02612 * 26 16 15 28 28 H 1.07998 * 119.99986 * 180.27519 * 1 2 3 29 29 H 1.08001 * 120.00215 * 0.28464 * 1 2 3 30 30 H 1.08003 * 120.00686 * 179.71772 * 2 1 3 31 31 H 1.09004 * 109.47151 * 244.72187 * 3 2 1 32 32 H 1.09000 * 109.47369 * 4.71930 * 3 2 1 33 33 H 1.09001 * 109.46847 * 174.99919 * 6 4 3 34 34 H 1.09001 * 109.46784 * 294.99417 * 6 4 3 35 35 H 0.96694 * 114.00054 * 180.02562 * 7 6 4 36 36 H 0.97006 * 120.00402 * 335.00231 * 8 4 3 37 37 H 1.08005 * 119.99456 * 353.20922 * 11 9 8 38 38 H 1.08003 * 120.00000 * 168.68139 * 12 11 9 39 39 H 1.07991 * 120.05112 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.95051 * 180.27345 * 15 14 13 41 41 H 0.97001 * 119.99840 * 179.97438 * 21 20 18 42 42 H 1.08000 * 119.94810 * 179.97438 * 26 16 15 43 43 H 1.07997 * 120.05392 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0301 1.3361 1.1856 5 1 3.6778 0.4602 1.1492 6 6 3.8828 2.6045 1.1154 7 8 3.0297 3.7487 1.0458 8 7 2.2683 1.3284 2.4370 9 6 2.8324 0.8563 3.5663 10 8 3.9749 0.4368 3.5467 11 6 2.0717 0.8481 4.8155 12 6 2.5834 0.2520 5.9136 13 6 3.7769 -0.5979 5.7996 14 6 3.8879 -1.5151 4.7473 15 6 5.0101 -2.3043 4.6410 16 6 6.0281 -2.2009 5.5844 17 8 7.1291 -2.9850 5.4792 18 6 8.1292 -2.7560 6.3533 19 1 7.9993 -2.0331 7.1451 20 6 9.3251 -3.4490 6.2360 21 7 9.4833 -4.3289 5.2717 22 14 10.7108 -3.1321 7.4480 23 1 10.5773 -4.0538 8.6046 24 1 12.0162 -3.3634 6.7788 25 1 10.6407 -1.7272 7.9239 26 6 5.9195 -1.2948 6.6352 27 6 4.8039 -0.4971 6.7461 28 1 -0.5400 -0.9353 0.0045 29 1 -0.5400 0.9353 -0.0046 30 1 1.8501 -0.9353 0.0046 31 1 2.6252 1.4004 -0.9293 32 1 1.3582 2.1319 0.0845 33 1 4.5084 2.6713 2.0055 34 1 4.5154 2.5683 0.2285 35 1 3.5036 4.5903 0.9986 36 1 1.3579 1.6630 2.4528 37 1 1.1008 1.3190 4.8596 38 1 2.1156 0.3997 6.8758 39 1 3.0965 -1.5990 4.0173 40 1 5.0986 -3.0089 3.8272 41 1 10.3198 -4.8132 5.1895 42 1 6.7118 -1.2183 7.3652 43 1 4.7207 0.2060 7.5615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492566886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = -42.126758 kcal Electronic energy + Delta-G solvation = -25853.302554 eV Core-core repulsion = 22058.722986 eV Total energy + Delta-G solvation = -3794.579568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.91288 -38.81218 -37.63016 -36.34657 -35.56219 -33.43102 -33.00862 -32.11212 -30.23667 -30.09288 -27.85333 -26.23135 -25.42431 -23.56425 -21.82590 -21.36998 -20.54969 -20.18933 -19.13441 -17.90373 -17.64636 -17.11063 -16.59454 -16.32874 -15.11101 -14.90930 -14.67614 -14.54123 -14.42683 -14.03846 -13.98549 -13.70696 -13.45361 -13.30313 -13.00267 -12.81387 -12.61652 -12.49988 -12.17777 -12.04614 -11.67984 -11.35668 -11.26832 -11.07163 -10.99031 -10.65832 -10.60022 -10.39971 -10.20368 -9.57798 -9.44367 -9.35182 -9.12929 -8.89136 -8.67576 -7.88981 -6.83573 -6.44356 -4.00138 1.29124 2.10058 2.44921 2.73230 3.14304 3.15694 3.19987 3.37843 3.67621 3.98298 4.14190 4.53386 4.72040 4.79580 4.96936 5.11142 5.16770 5.19671 5.24910 5.27618 5.31301 5.37923 5.56351 5.61263 5.66258 5.75325 5.77123 5.87743 5.94389 6.27607 6.36906 6.45175 6.47940 6.53900 6.63170 6.66833 6.81877 7.06190 7.14482 7.38882 7.40354 7.48193 7.52519 7.77278 7.94773 8.02525 8.61130 9.01450 9.73789 10.73608 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.002882 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.767589 B = 9714.234688 C =10031.263234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.096 4.096 4 C 0.155 3.845 5 H 0.102 0.898 6 C 0.062 3.938 7 O -0.571 6.571 8 N -0.721 5.721 9 C 0.540 3.460 10 O -0.516 6.516 11 C -0.264 4.264 12 C 0.025 3.975 13 C -0.187 4.187 14 C 0.014 3.986 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.376 0.624 36 H 0.397 0.603 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 13.271 -6.965 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C -0.134 4.134 4 C 0.050 3.950 5 H 0.120 0.880 6 C -0.017 4.017 7 O -0.376 6.376 8 N -0.373 5.373 9 C 0.330 3.670 10 O -0.393 6.393 11 C -0.285 4.285 12 C 0.005 3.995 13 C -0.188 4.188 14 C -0.005 4.005 15 C -0.223 4.223 16 C 0.117 3.883 17 O -0.076 6.076 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.270 4.270 27 C -0.061 4.061 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.223 0.777 36 H 0.230 0.770 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.423 12.137 -7.208 20.907 hybrid contribution 0.688 0.885 0.553 1.250 sum -14.735 13.021 -6.655 20.759 Atomic orbital electron populations 1.23809 0.95877 1.01690 1.01932 1.22978 0.96143 0.98439 0.99078 1.20950 0.98766 0.95933 0.97716 1.20915 0.93393 0.96860 0.83865 0.88027 1.22693 0.92441 0.86072 1.00509 1.86424 1.37160 1.16547 1.97489 1.45907 1.17461 1.65763 1.08145 1.18498 0.87259 0.77387 0.83874 1.90986 1.17860 1.45463 1.85009 1.22608 1.01685 1.09999 0.94247 1.22318 0.92087 0.88511 0.96596 1.18292 0.96994 1.03157 1.00387 1.20435 0.95363 0.91783 0.92911 1.20001 0.94981 1.06034 1.01252 1.19521 0.87868 0.88581 0.92375 1.83907 1.21828 1.49339 1.52546 1.21390 0.91543 1.24684 1.08971 0.88919 1.25316 0.97732 0.95761 0.97751 1.70021 1.26147 1.23188 1.30156 0.85705 0.79375 0.79081 0.79245 1.19846 1.20243 1.19148 1.20944 1.00824 1.02856 1.02377 1.20740 0.92886 0.96347 0.96089 0.88609 0.88730 0.87293 0.89814 0.90197 0.92642 0.93001 0.77718 0.76971 0.86263 0.86177 0.88111 0.86906 0.91986 0.85703 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 14.32 29.01 0.42 -1.18 16 2 C -0.15 -1.34 9.25 -36.02 -0.33 -1.67 16 3 C -0.10 -0.84 4.92 -27.88 -0.14 -0.98 16 4 C 0.16 1.70 2.36 -67.93 -0.16 1.54 16 5 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 6 C 0.06 0.64 6.85 37.16 0.25 0.90 16 7 O -0.57 -5.26 12.83 -35.23 -0.45 -5.71 16 8 N -0.72 -8.31 4.73 -55.25 -0.26 -8.57 16 9 C 0.54 8.02 6.74 -13.04 -0.09 7.93 16 10 O -0.52 -9.90 11.84 5.17 0.06 -9.84 16 11 C -0.26 -3.45 9.90 -37.51 -0.37 -3.82 16 12 C 0.02 0.35 9.80 -37.20 -0.36 -0.01 16 13 C -0.19 -3.50 4.54 -105.02 -0.48 -3.98 16 14 C 0.01 0.27 6.60 -39.14 -0.26 0.02 16 15 C -0.20 -4.70 9.97 -39.46 -0.39 -5.09 16 16 C 0.17 4.38 6.66 -38.88 -0.26 4.12 16 17 O -0.17 -5.14 9.74 0.72 0.01 -5.13 16 18 C -0.39 -11.17 9.48 30.91 0.29 -10.87 16 19 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 22 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 26 C -0.25 -5.77 9.14 -39.47 -0.36 -6.13 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 28 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.09 0.68 7.84 -52.49 -0.41 0.27 16 30 H 0.11 1.05 8.06 -52.48 -0.42 0.62 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.70 7.38 -51.93 -0.38 0.31 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.38 2.04 9.12 45.56 0.42 2.45 16 36 H 0.40 3.80 8.58 -40.82 -0.35 3.45 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.10 1.86 7.02 -52.49 -0.37 1.49 16 40 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 2.84 5.62 -52.49 -0.29 2.55 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -34.22 368.88 -7.07 -41.29 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.00 Total: 10.89 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.72 Total: -19.44 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.50 Total: -33.42 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.38 Total: -20.68 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.22 -7.07 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492566886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.836 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds