Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99815 * 2 1 4 4 C 1.52999 * 109.47290 * 124.72441 * 3 2 1 5 5 H 1.08997 * 109.47285 * 54.99471 * 4 3 2 6 6 C 1.53003 * 109.47115 * 175.00152 * 4 3 2 7 7 O 1.42895 * 109.47281 * 54.99879 * 6 4 3 8 8 N 1.46502 * 109.46891 * 294.99673 * 4 3 2 9 9 C 1.34775 * 120.00000 * 155.00077 * 8 4 3 10 10 O 1.21721 * 120.00056 * 0.02562 * 9 8 4 11 11 C 1.46260 * 120.00095 * 180.02562 * 9 8 4 12 12 C 1.35014 * 120.00107 * 173.21393 * 11 9 8 13 13 C 1.46960 * 120.00251 * 348.67932 * 12 11 9 14 14 C 1.40031 * 120.09685 * 316.40948 * 13 12 11 15 15 C 1.37600 * 119.89314 * 179.69040 * 14 13 12 16 16 C 1.39180 * 120.10199 * 0.60610 * 15 14 13 17 17 O 1.35574 * 119.89817 * 179.69131 * 16 15 14 18 18 C 1.34784 * 116.99812 * 174.33254 * 17 16 15 19 19 H 1.07997 * 119.99966 * 5.06672 * 18 17 16 20 20 C 1.38721 * 119.99661 * 185.05893 * 18 17 16 21 21 N 1.31502 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99578 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46942 * 90.00449 * 22 20 18 24 24 H 1.48505 * 109.46835 * 210.00084 * 22 20 18 25 25 H 1.48496 * 109.47407 * 330.00279 * 22 20 18 26 26 C 1.39175 * 120.20293 * 359.66872 * 16 15 14 27 27 C 1.37594 * 120.10301 * 0.02612 * 26 16 15 28 28 H 1.07998 * 119.99986 * 180.27519 * 1 2 3 29 29 H 1.08001 * 120.00215 * 0.28464 * 1 2 3 30 30 H 1.08003 * 120.00686 * 179.71772 * 2 1 3 31 31 H 1.09004 * 109.47151 * 244.72187 * 3 2 1 32 32 H 1.09000 * 109.47369 * 4.71930 * 3 2 1 33 33 H 1.09001 * 109.46847 * 174.99919 * 6 4 3 34 34 H 1.09001 * 109.46784 * 294.99417 * 6 4 3 35 35 H 0.96694 * 114.00054 * 180.02562 * 7 6 4 36 36 H 0.97006 * 120.00402 * 335.00231 * 8 4 3 37 37 H 1.08005 * 119.99456 * 353.20922 * 11 9 8 38 38 H 1.08003 * 120.00000 * 168.68139 * 12 11 9 39 39 H 1.07991 * 120.05112 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.95051 * 180.27345 * 15 14 13 41 41 H 0.97001 * 119.99840 * 179.97438 * 21 20 18 42 42 H 1.08000 * 119.94810 * 179.97438 * 26 16 15 43 43 H 1.07997 * 120.05392 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0301 1.3361 1.1856 5 1 3.6778 0.4602 1.1492 6 6 3.8828 2.6045 1.1154 7 8 3.0297 3.7487 1.0458 8 7 2.2683 1.3284 2.4370 9 6 2.8324 0.8563 3.5663 10 8 3.9749 0.4368 3.5467 11 6 2.0717 0.8481 4.8155 12 6 2.5834 0.2520 5.9136 13 6 3.7769 -0.5979 5.7996 14 6 3.8879 -1.5151 4.7473 15 6 5.0101 -2.3043 4.6410 16 6 6.0281 -2.2009 5.5844 17 8 7.1291 -2.9850 5.4792 18 6 8.1292 -2.7560 6.3533 19 1 7.9993 -2.0331 7.1451 20 6 9.3251 -3.4490 6.2360 21 7 9.4833 -4.3289 5.2717 22 14 10.7108 -3.1321 7.4480 23 1 10.5773 -4.0538 8.6046 24 1 12.0162 -3.3634 6.7788 25 1 10.6407 -1.7272 7.9239 26 6 5.9195 -1.2948 6.6352 27 6 4.8039 -0.4971 6.7461 28 1 -0.5400 -0.9353 0.0045 29 1 -0.5400 0.9353 -0.0046 30 1 1.8501 -0.9353 0.0046 31 1 2.6252 1.4004 -0.9293 32 1 1.3582 2.1319 0.0845 33 1 4.5084 2.6713 2.0055 34 1 4.5154 2.5683 0.2285 35 1 3.5036 4.5903 0.9986 36 1 1.3579 1.6630 2.4528 37 1 1.1008 1.3190 4.8596 38 1 2.1156 0.3997 6.8758 39 1 3.0965 -1.5990 4.0173 40 1 5.0986 -3.0089 3.8272 41 1 10.3198 -4.8132 5.1895 42 1 6.7118 -1.2183 7.3652 43 1 4.7207 0.2060 7.5615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492566886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = -67.468562 kcal Electronic energy + Delta-G solvation = -25854.401458 eV Core-core repulsion = 22058.722986 eV Total energy + Delta-G solvation = -3795.678471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17836 -40.48897 -38.77771 -37.86337 -36.38619 -34.59598 -34.37670 -33.89483 -31.81510 -31.21032 -29.38411 -27.41869 -26.98594 -24.84991 -23.53863 -22.79473 -21.61986 -21.02001 -20.34851 -19.73273 -18.86556 -18.46207 -17.92609 -17.30322 -16.39929 -16.32893 -16.18064 -15.91401 -15.55191 -15.44476 -15.28905 -15.03902 -14.71112 -14.58468 -14.52342 -14.18185 -13.86980 -13.64190 -13.53857 -13.35962 -13.03418 -12.91349 -12.63229 -12.34819 -12.22311 -12.12134 -12.05602 -11.79856 -11.23690 -11.03401 -10.92338 -10.63806 -10.38213 -10.22536 -9.97655 -9.53591 -8.54723 -8.48226 -6.15679 0.00883 0.72317 1.13879 1.33302 1.41992 1.45342 1.51902 2.17066 2.38709 2.51448 2.87351 3.21326 3.38531 3.52909 3.75848 3.97922 4.03588 4.09178 4.17151 4.19104 4.24887 4.38419 4.45941 4.55104 4.57577 4.61534 4.74185 4.77518 4.85200 5.04193 5.06768 5.10287 5.18265 5.26894 5.27951 5.47123 5.61193 5.68794 5.73047 5.78961 5.86236 5.89856 6.02633 6.25582 6.76535 6.83178 6.95513 7.49275 7.77820 8.74827 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.002882 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.767589 B = 9714.234688 C =10031.263234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C -0.082 4.082 4 C 0.150 3.850 5 H 0.074 0.926 6 C 0.070 3.930 7 O -0.574 6.574 8 N -0.701 5.701 9 C 0.527 3.473 10 O -0.568 6.568 11 C -0.231 4.231 12 C 0.003 3.997 13 C -0.159 4.159 14 C 0.017 3.983 15 C -0.221 4.221 16 C 0.128 3.872 17 O -0.231 6.231 18 C -0.416 4.416 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.022 2.978 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.259 4.259 27 C -0.048 4.048 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.411 0.589 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.507 16.747 -6.074 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.186 4.186 3 C -0.120 4.120 4 C 0.045 3.955 5 H 0.092 0.908 6 C -0.009 4.009 7 O -0.381 6.381 8 N -0.353 5.353 9 C 0.318 3.682 10 O -0.449 6.449 11 C -0.252 4.252 12 C -0.016 4.016 13 C -0.160 4.160 14 C -0.002 4.002 15 C -0.241 4.241 16 C 0.077 3.923 17 O -0.138 6.138 18 C -0.492 4.492 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.840 3.160 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.278 4.278 27 C -0.066 4.066 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.247 0.753 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.960 15.682 -6.339 25.408 hybrid contribution 1.261 0.106 0.073 1.267 sum -17.700 15.788 -6.266 24.532 Atomic orbital electron populations 1.23978 0.95447 1.02651 0.99952 1.22951 0.96634 0.98085 1.00932 1.20839 0.98290 0.96015 0.96828 1.20950 0.93778 0.96237 0.84565 0.90773 1.22476 0.92172 0.86402 0.99873 1.86368 1.37260 1.17107 1.97392 1.45788 1.17902 1.64044 1.07563 1.19059 0.86880 0.76973 0.85332 1.90994 1.20215 1.47786 1.85918 1.23062 1.02365 1.07674 0.92075 1.22551 0.90692 0.89074 0.99274 1.18858 0.97856 1.01406 0.97841 1.20644 0.94542 0.91228 0.93754 1.20174 0.96058 1.06865 1.00964 1.19992 0.87815 0.90138 0.94346 1.83875 1.23453 1.52066 1.54377 1.21885 0.92264 1.25493 1.09510 0.88048 1.26667 1.00333 0.95179 0.99941 1.70174 1.27265 1.25377 1.33088 0.84557 0.75202 0.79681 0.76543 1.18468 1.19474 1.17701 1.21080 1.02111 1.03051 1.01561 1.21172 0.91615 0.96199 0.97603 0.88210 0.87190 0.88703 0.89000 0.89253 0.95523 0.91549 0.75636 0.75260 0.81352 0.81527 0.86424 0.88142 0.91764 0.86266 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 14.32 67.78 0.97 -1.50 16 2 C -0.17 -2.75 9.25 25.65 0.24 -2.51 16 3 C -0.08 -1.26 4.92 29.85 0.15 -1.12 16 4 C 0.15 3.11 2.36 44.99 0.11 3.22 16 5 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 6 C 0.07 1.37 6.85 71.98 0.49 1.86 16 7 O -0.57 -8.95 12.83 -148.98 -1.91 -10.86 16 8 N -0.70 -14.23 4.73 -446.91 -2.12 -16.34 16 9 C 0.53 14.23 6.74 86.33 0.58 14.81 16 10 O -0.57 -21.48 11.84 -4.42 -0.05 -21.53 16 11 C -0.23 -4.78 9.90 23.61 0.23 -4.55 16 12 C 0.00 0.08 9.80 23.81 0.23 0.31 16 13 C -0.16 -5.58 4.54 -20.12 -0.09 -5.67 16 14 C 0.02 0.67 6.60 22.55 0.15 0.82 16 15 C -0.22 -10.88 9.97 22.35 0.22 -10.65 16 16 C 0.13 7.01 6.66 22.72 0.15 7.16 16 17 O -0.23 -14.91 9.74 -20.34 -0.20 -15.10 16 18 C -0.42 -25.47 9.48 67.94 0.64 -24.82 16 19 H 0.10 5.72 5.18 -2.91 -0.02 5.70 16 20 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 21 N -0.92 -58.58 13.67 21.62 0.30 -58.29 16 22 Si 1.02 44.34 29.55 68.60 2.03 46.36 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.26 -12.29 9.14 22.34 0.20 -12.09 16 27 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 28 H 0.10 1.27 8.06 -2.91 -0.02 1.24 16 29 H 0.11 1.15 7.84 -2.91 -0.02 1.13 16 30 H 0.09 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.09 1.24 7.38 -2.39 -0.02 1.22 16 33 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.39 3.17 9.12 -74.06 -0.68 2.49 16 36 H 0.41 6.09 8.58 -92.70 -0.80 5.29 16 37 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.12 4.25 7.02 -2.92 -0.02 4.23 16 40 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 42 H 0.12 5.66 5.62 -2.91 -0.02 5.65 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -83.15 368.88 2.59 -80.56 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.43 Total: 32.46 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.97 Total: -37.26 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.82 Total: -74.63 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -2.16 Total: -47.49 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -83.15 2.59 -80.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492566886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.093 kcal (2) G-P(sol) polarization free energy of solvation -83.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds