Wall clock time and date at job start Tue Mar 31 2020 11:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 117.00374 * 2 1 4 4 C 1.38080 * 119.99684 * 359.97438 * 3 2 1 5 5 C 1.39982 * 119.83866 * 179.97438 * 4 3 2 6 6 C 1.46968 * 120.07885 * 179.97438 * 5 4 3 7 7 C 1.35020 * 119.99538 * 219.97941 * 6 5 4 8 8 C 1.46246 * 120.00579 * 13.61757 * 7 6 5 9 9 O 1.21729 * 120.00054 * 6.63649 * 8 7 6 10 10 N 1.34775 * 120.00255 * 186.63408 * 8 7 6 11 11 C 1.47067 * 136.05786 * 359.62809 * 10 8 7 12 12 C 1.53241 * 88.08510 * 207.20558 * 11 10 8 13 13 C 1.53003 * 114.32736 * 220.47274 * 12 11 10 14 14 C 1.47072 * 136.05620 * 180.02562 * 10 8 7 15 15 C 1.40032 * 119.83846 * 359.97438 * 5 4 3 16 16 C 1.37644 * 120.00289 * 0.02562 * 15 5 4 17 17 C 1.39053 * 120.16046 * 0.25692 * 16 15 5 18 18 O 1.35623 * 119.91975 * 179.72340 * 17 16 15 19 19 C 1.34754 * 116.99576 * 353.39279 * 18 17 16 20 20 H 1.07994 * 120.00659 * 5.12934 * 19 18 17 21 21 C 1.38715 * 119.99576 * 185.13784 * 19 18 17 22 22 N 1.31515 * 119.99986 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99992 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47148 * 59.99681 * 23 21 19 25 25 H 1.48501 * 109.47365 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47399 * 299.99883 * 23 21 19 27 27 H 1.08996 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47135 * 300.01125 * 1 2 3 29 29 H 1.09003 * 109.46590 * 60.00612 * 1 2 3 30 30 H 1.08001 * 120.08095 * 359.95919 * 4 3 2 31 31 H 1.08003 * 119.99797 * 39.98124 * 6 5 4 32 32 H 1.08004 * 119.99695 * 193.62210 * 7 6 5 33 33 H 1.08991 * 113.46741 * 321.93979 * 11 10 8 34 34 H 1.09004 * 113.46321 * 92.38147 * 11 10 8 35 35 H 1.08991 * 114.01566 * 87.71859 * 12 11 10 36 36 H 1.08993 * 109.46833 * 153.76059 * 13 12 11 37 37 H 1.09001 * 109.46789 * 273.76124 * 13 12 11 38 38 H 1.09003 * 109.46905 * 33.75792 * 13 12 11 39 39 H 1.09005 * 113.46536 * 267.61935 * 14 10 8 40 40 H 1.08996 * 113.47460 * 38.06077 * 14 10 8 41 41 H 1.08004 * 119.99497 * 180.02562 * 15 5 4 42 42 H 1.07997 * 119.91658 * 179.97438 * 16 15 5 43 43 H 0.96998 * 120.00139 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 -0.0005 5 6 1.9333 3.6148 0.0000 6 6 1.1380 4.8507 -0.0011 7 6 1.5272 5.9031 -0.7522 8 6 2.5510 5.7281 -1.7818 9 8 2.9653 4.6142 -2.0450 10 7 3.0358 6.8001 -2.4392 11 6 2.7989 8.2514 -2.4182 12 6 3.2436 8.2933 -3.8841 13 6 4.1210 9.4944 -4.2426 14 6 4.0294 7.0325 -3.4984 15 6 3.3321 3.6802 0.0016 16 6 4.0753 2.5217 0.0022 17 6 3.4406 1.2845 -0.0043 18 8 4.1776 0.1460 -0.0094 19 6 5.5114 0.2815 -0.1461 20 1 5.9555 1.2657 -0.1619 21 6 6.3139 -0.8435 -0.2666 22 7 5.7732 -2.0422 -0.2469 23 14 8.1627 -0.6559 -0.4567 24 1 8.7127 0.0522 0.7271 25 1 8.7880 -1.9984 -0.5646 26 1 8.4572 0.1279 -1.6832 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 0.2157 2.3144 -0.0016 31 1 0.2424 4.9171 0.5988 32 1 1.0825 6.8743 -0.5925 33 1 1.7518 8.5183 -2.2760 34 1 3.4670 8.7905 -1.7464 35 1 2.4383 8.1170 -4.5971 36 1 4.7551 9.2405 -5.0919 37 1 3.4874 10.3423 -4.5028 38 1 4.7454 9.7560 -3.3883 39 1 5.0286 7.2435 -3.1173 40 1 4.0262 6.2654 -4.2726 41 1 3.8278 4.6398 0.0025 42 1 5.1540 2.5737 0.0030 43 1 6.3344 -2.8289 -0.3308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492761676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:52 Heat of formation + Delta-G solvation = 3.112136 kcal Electronic energy + Delta-G solvation = -26100.653881 eV Core-core repulsion = 22308.036018 eV Total energy + Delta-G solvation = -3792.617862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.44123 -39.49348 -38.12047 -37.42900 -35.87181 -32.90627 -32.14413 -31.67658 -29.43411 -28.64090 -27.11576 -26.24215 -26.12274 -25.22769 -22.93478 -21.46524 -21.12636 -20.04839 -18.51911 -17.96530 -17.61361 -16.71900 -16.19209 -15.87711 -15.40622 -15.09132 -15.02631 -14.65691 -14.37682 -13.96565 -13.77384 -13.52757 -13.40934 -13.30155 -13.10853 -12.91631 -12.65794 -12.20612 -12.19713 -11.81368 -11.65642 -11.59722 -11.39295 -11.30987 -11.00038 -10.87908 -10.63258 -10.59861 -10.45258 -10.29702 -9.47623 -9.30614 -9.08835 -8.64742 -8.60195 -7.67980 -6.61035 -6.40892 -3.93052 1.18389 2.35717 2.71509 2.95082 3.16299 3.19289 3.20904 3.62825 4.00107 4.01344 4.14247 4.59132 4.67160 4.68118 4.93742 5.01602 5.09534 5.18224 5.24035 5.26207 5.27338 5.40788 5.48124 5.54279 5.56960 5.61930 5.65032 5.71609 5.74946 5.84947 5.88288 5.94443 6.03622 6.27358 6.36695 6.48693 6.63545 6.75707 7.06136 7.20368 7.31480 7.49409 7.73456 7.87076 8.01005 8.30591 8.53006 9.03125 9.75527 10.76019 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.003777 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.386967 B = 7411.577541 C = 9439.095858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.037 3.963 4 C -0.133 4.133 5 C -0.163 4.163 6 C 0.026 3.974 7 C -0.261 4.261 8 C 0.568 3.432 9 O -0.508 6.508 10 N -0.652 5.652 11 C 0.105 3.895 12 C -0.132 4.132 13 C -0.140 4.140 14 C 0.107 3.893 15 C -0.003 4.003 16 C -0.225 4.225 17 C 0.154 3.846 18 O -0.156 6.156 19 C -0.388 4.388 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.854 5.854 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 20.898 -3.411 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.165 4.165 6 C 0.007 3.993 7 C -0.282 4.282 8 C 0.362 3.638 9 O -0.384 6.384 10 N -0.389 5.389 11 C -0.019 4.019 12 C -0.151 4.151 13 C -0.198 4.198 14 C -0.016 4.016 15 C -0.022 4.022 16 C -0.245 4.245 17 C 0.099 3.901 18 O -0.058 6.058 19 C -0.464 4.464 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.487 5.487 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.149 0.851 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.389 19.348 -3.417 20.991 hybrid contribution 0.619 0.507 -0.149 0.814 sum -6.769 19.855 -3.566 21.278 Atomic orbital electron populations 1.22850 0.80691 1.02713 1.00088 1.86220 1.19135 1.26448 1.90110 1.17921 0.89333 0.84370 1.09098 1.20689 0.97992 0.90967 1.05603 1.18037 0.92843 0.91269 1.14321 1.22285 0.94341 0.91387 0.91331 1.22468 1.04577 0.99719 1.01398 1.18075 0.81770 0.82554 0.81449 1.91019 1.59560 1.22557 1.65290 1.49599 1.41927 1.06544 1.40846 1.22986 1.01675 0.81421 0.95805 1.22954 0.99560 0.95745 0.96812 1.21643 0.99376 0.96762 1.02010 1.22946 0.93194 0.95765 0.89731 1.20526 0.92019 0.96494 0.93147 1.20718 1.00316 0.90878 1.12542 1.18807 0.88234 0.87539 0.95533 1.83984 1.19610 1.25746 1.76502 1.21395 0.78855 0.94804 1.51388 0.88952 1.25331 1.00523 0.94197 0.96493 1.70042 1.36364 0.97638 1.44694 0.85773 0.80387 0.77953 0.79286 1.19419 1.20217 1.19413 0.89239 0.93740 0.93761 0.86476 0.85954 0.86288 0.90757 0.90057 0.88034 0.91888 0.92092 0.92170 0.90110 0.90594 0.88317 0.85130 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.30 -7.12 10.28 -34.21 -0.35 -7.47 16 3 C 0.04 0.89 6.70 -39.12 -0.26 0.63 16 4 C -0.13 -2.67 8.77 -38.99 -0.34 -3.01 16 5 C -0.16 -3.17 4.63 -105.04 -0.49 -3.66 16 6 C 0.03 0.39 9.81 -37.19 -0.36 0.02 16 7 C -0.26 -3.63 9.70 -37.51 -0.36 -3.99 16 8 C 0.57 9.42 6.90 -13.04 -0.09 9.33 16 9 O -0.51 -10.88 12.96 5.16 0.07 -10.82 16 10 N -0.65 -8.41 3.69 -187.08 -0.69 -9.10 16 11 C 0.10 0.86 7.89 -8.63 -0.07 0.79 16 12 C -0.13 -0.97 4.69 -90.24 -0.42 -1.39 16 13 C -0.14 -0.74 9.79 37.16 0.36 -0.37 16 14 C 0.11 1.14 8.20 -8.50 -0.07 1.07 16 15 C 0.00 -0.07 6.59 -39.13 -0.26 -0.32 16 16 C -0.22 -5.46 9.14 -39.50 -0.36 -5.82 16 17 C 0.15 4.13 6.67 -38.76 -0.26 3.87 16 18 O -0.16 -4.80 9.52 -13.95 -0.13 -4.93 16 19 C -0.39 -11.44 9.48 30.91 0.29 -11.15 16 20 H 0.09 2.52 5.19 -52.49 -0.27 2.25 16 21 C 0.04 1.14 5.49 -17.51 -0.10 1.04 16 22 N -0.85 -25.95 13.67 55.48 0.76 -25.19 16 23 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.04 0.65 7.66 -51.93 -0.40 0.26 16 30 H 0.12 1.93 6.28 -52.49 -0.33 1.60 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.12 1.25 7.98 -52.48 -0.42 0.83 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 39 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.96 6.79 -52.48 -0.36 1.61 16 42 H 0.13 3.14 5.63 -52.49 -0.30 2.84 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -36.74 361.60 -7.52 -44.26 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.81 Total: 3.04 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.79 Total: -11.44 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.07 Total: -34.30 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.42 Total: -23.22 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.74 -7.52 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492761676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.373 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds