Wall clock time and date at job start Tue Mar 31 2020 12:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 C 1.50705 * 109.47017 * 240.00217 * 2 1 3 5 5 H 1.08003 * 119.99960 * 239.99846 * 4 2 1 6 6 C 1.37878 * 120.00079 * 59.99607 * 4 2 1 7 7 N 1.31516 * 119.99931 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99786 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47474 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47201 * 120.00186 * 8 6 4 11 11 H 1.48507 * 109.46954 * 239.99934 * 8 6 4 12 12 C 1.53002 * 109.47412 * 120.00033 * 2 1 3 13 13 N 1.46502 * 109.46773 * 300.00085 * 12 2 1 14 14 C 1.34774 * 119.99527 * 180.02562 * 13 12 2 15 15 O 1.21720 * 120.00176 * 359.97438 * 14 13 12 16 16 C 1.46261 * 119.99904 * 180.27293 * 14 13 12 17 17 C 1.34978 * 119.99923 * 172.93694 * 16 14 13 18 18 C 1.47000 * 120.00262 * 349.03640 * 17 16 14 19 19 C 1.39952 * 120.10649 * 136.34700 * 18 17 16 20 20 C 1.37723 * 119.97648 * 180.02562 * 19 18 17 21 21 C 1.38893 * 120.24955 * 0.02562 * 20 19 18 22 22 C 1.39585 * 120.09448 * 359.97438 * 21 20 19 23 23 C 1.38085 * 120.00609 * 359.71466 * 22 21 20 24 24 O 1.36544 * 108.58923 * 180.02562 * 22 21 20 25 25 C 1.43983 * 105.45032 * 342.68290 * 24 22 21 26 26 O 1.36397 * 131.32656 * 180.02562 * 21 20 19 27 27 H 1.09003 * 109.46868 * 299.99686 * 1 2 3 28 28 H 1.08999 * 109.47184 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47295 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46808 * 299.99945 * 3 2 1 32 32 H 1.09001 * 109.47291 * 59.99682 * 3 2 1 33 33 H 0.96994 * 119.99953 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46850 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47069 * 59.99760 * 12 2 1 36 36 H 0.96997 * 120.00183 * 359.97438 * 13 12 2 37 37 H 1.07995 * 119.99692 * 352.94016 * 16 14 13 38 38 H 1.08000 * 119.99966 * 169.03235 * 17 16 14 39 39 H 1.08000 * 120.01623 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.87595 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.05393 * 180.27693 * 23 22 21 42 42 H 1.09001 * 110.56572 * 268.63334 * 25 24 22 43 43 H 1.09004 * 110.55676 * 145.78536 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8778 -0.4908 3.6694 15 8 2.5777 -1.4804 3.7811 16 6 1.3854 0.1952 4.8637 17 6 1.5908 -0.3433 6.0842 18 6 2.0887 -1.7211 6.2054 19 6 3.0953 -2.0251 7.1291 20 6 3.5602 -3.3168 7.2400 21 6 3.0341 -4.3211 6.4377 22 6 2.0300 -4.0254 5.5142 23 6 1.5541 -2.7341 5.4014 24 8 1.6895 -5.1738 4.8588 25 6 2.7751 -6.0887 5.0987 26 8 3.3192 -5.6526 6.3583 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 0.7088 1.1614 -3.4843 34 1 3.1301 -0.7216 1.2489 35 1 1.6768 -1.7489 1.2493 36 1 0.9944 0.7582 2.3564 37 1 0.8574 1.1325 4.7689 38 1 1.3894 0.2381 6.9718 39 1 3.5080 -1.2470 7.7540 40 1 4.3367 -3.5496 7.9536 41 1 0.7741 -2.5053 4.6903 42 1 3.5237 -6.0098 4.3104 43 1 2.4044 -7.1109 5.1752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493304967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:55 Heat of formation + Delta-G solvation = -46.477790 kcal Electronic energy + Delta-G solvation = -26411.122618 eV Core-core repulsion = 22616.354375 eV Total energy + Delta-G solvation = -3794.768243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05352 -39.65469 -37.81769 -36.34272 -36.19871 -33.42549 -33.24998 -30.94897 -30.37713 -29.16435 -26.14830 -25.74082 -25.62977 -25.09249 -23.46994 -22.78282 -21.60564 -19.50788 -18.73798 -17.99666 -17.88899 -17.28373 -16.64792 -15.98998 -15.69612 -15.19276 -14.83628 -14.68890 -14.39720 -14.13728 -14.04215 -13.75059 -13.33534 -13.00055 -12.92028 -12.86976 -12.77097 -12.59082 -12.18970 -12.03136 -11.40626 -11.27381 -11.21137 -10.91371 -10.87316 -10.67130 -10.40534 -10.21501 -9.72611 -9.65297 -9.56918 -9.29352 -8.79708 -8.51975 -8.38773 -8.16286 -7.79393 -6.03546 -4.13425 0.66886 1.36160 1.76956 2.82157 3.26090 3.34756 3.39305 3.46576 3.64841 3.74177 3.83320 4.39539 4.53036 4.66280 4.69601 4.89874 4.99137 5.14185 5.16527 5.23416 5.26535 5.39177 5.55913 5.91129 6.02119 6.13331 6.17045 6.24094 6.31777 6.35494 6.37580 6.49685 6.57865 6.77127 6.80942 6.93047 7.00523 7.02869 7.18979 7.34411 7.54275 7.68353 7.99674 8.05744 8.15326 8.37432 8.71388 8.87651 9.52526 10.97930 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.003277 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.910062 B = 8541.650304 C = 9773.529948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.708 5.708 14 C 0.523 3.477 15 O -0.541 6.541 16 C -0.196 4.196 17 C -0.037 4.037 18 C -0.055 4.055 19 C -0.092 4.092 20 C -0.116 4.116 21 C 0.037 3.963 22 C 0.020 3.980 23 C -0.013 4.013 24 O -0.309 6.309 25 C 0.214 3.786 26 O -0.314 6.314 27 H 0.006 0.994 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.006 0.994 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -3.542 18.859 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.010 3.990 13 N -0.357 5.357 14 C 0.311 3.689 15 O -0.421 6.421 16 C -0.217 4.217 17 C -0.056 4.056 18 C -0.056 4.056 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.007 4.007 22 C -0.024 4.024 23 C -0.032 4.032 24 O -0.226 6.226 25 C 0.102 3.898 26 O -0.230 6.230 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.877 -4.355 18.734 19.254 hybrid contribution 0.145 -0.190 -1.250 1.273 sum 1.022 -4.546 17.485 18.095 Atomic orbital electron populations 1.21827 0.97742 0.99158 1.00082 1.18366 0.92804 0.92765 0.90626 1.21828 0.98560 0.98347 1.00086 1.21023 1.31370 1.12051 0.89902 0.92453 1.24877 0.94863 0.94919 0.98852 1.69809 1.36754 1.22777 1.23118 0.86526 0.78653 0.79765 0.83012 1.19786 1.21040 1.21048 1.21704 0.98124 0.95742 0.83454 1.46323 1.51715 1.31573 1.06137 1.18442 0.81736 0.84611 0.84122 1.90861 1.38874 1.25893 1.86508 1.23217 1.03241 1.02206 0.93043 1.22174 0.93885 0.92458 0.97121 1.18474 0.97910 0.92578 0.96589 1.20874 0.96623 0.95224 0.98294 1.19789 1.02042 0.90082 1.01564 1.19956 0.97649 0.83742 0.99335 1.19511 0.98057 0.88496 0.96312 1.19954 1.00072 0.87035 0.96140 1.87374 1.42351 1.21482 1.71377 1.25567 0.85501 0.94769 0.83943 1.87278 1.76728 1.19992 1.39012 0.97486 0.89603 0.95479 0.95483 0.89597 0.97482 0.93064 0.92740 0.92741 0.76694 0.84892 0.84397 0.84685 0.85106 0.85518 0.89948 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.50 -13.21 8.01 -34.44 -0.28 -13.48 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 8 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.71 -12.24 4.95 -61.75 -0.31 -12.55 16 14 C 0.52 8.64 6.79 -13.04 -0.09 8.55 16 15 O -0.54 -10.59 12.16 5.17 0.06 -10.53 16 16 C -0.20 -2.33 9.91 -37.52 -0.37 -2.70 16 17 C -0.04 -0.39 9.80 -37.19 -0.36 -0.75 16 18 C -0.06 -0.72 4.53 -105.07 -0.48 -1.20 16 19 C -0.09 -1.05 9.78 -39.13 -0.38 -1.43 16 20 C -0.12 -1.43 10.04 -39.53 -0.40 -1.82 16 21 C 0.04 0.55 7.16 -38.84 -0.28 0.27 16 22 C 0.02 0.32 7.13 -39.14 -0.28 0.04 16 23 C -0.01 -0.20 6.60 -39.00 -0.26 -0.46 16 24 O -0.31 -4.83 11.41 -45.83 -0.52 -5.36 16 25 C 0.21 2.53 8.88 101.05 0.90 3.43 16 26 O -0.31 -4.31 11.40 -45.35 -0.52 -4.83 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 33 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 6.17 6.14 -40.82 -0.25 5.92 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 2.05 7.03 -52.49 -0.37 1.68 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -30.72 351.25 -8.09 -38.81 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.73 Total: 5.63 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.86 Total: -9.18 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.21 Total: -35.54 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.98 Total: -20.71 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.72 -8.09 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493304967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.668 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds