Wall clock time and date at job start Tue Mar 31 2020 12:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 C 1.50705 * 109.47017 * 240.00217 * 2 1 3 5 5 H 1.08003 * 119.99960 * 239.99846 * 4 2 1 6 6 C 1.37878 * 120.00079 * 59.99607 * 4 2 1 7 7 N 1.31516 * 119.99931 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99786 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47474 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47201 * 120.00186 * 8 6 4 11 11 H 1.48507 * 109.46954 * 239.99934 * 8 6 4 12 12 C 1.53002 * 109.47412 * 120.00033 * 2 1 3 13 13 N 1.46502 * 109.46773 * 300.00085 * 12 2 1 14 14 C 1.34774 * 119.99527 * 180.02562 * 13 12 2 15 15 O 1.21720 * 120.00176 * 359.97438 * 14 13 12 16 16 C 1.46261 * 119.99904 * 180.27293 * 14 13 12 17 17 C 1.34978 * 119.99923 * 172.93694 * 16 14 13 18 18 C 1.47000 * 120.00262 * 349.03640 * 17 16 14 19 19 C 1.39952 * 120.10649 * 136.34700 * 18 17 16 20 20 C 1.37723 * 119.97648 * 180.02562 * 19 18 17 21 21 C 1.38893 * 120.24955 * 0.02562 * 20 19 18 22 22 C 1.39585 * 120.09448 * 359.97438 * 21 20 19 23 23 C 1.38085 * 120.00609 * 359.71466 * 22 21 20 24 24 O 1.36544 * 108.58923 * 180.02562 * 22 21 20 25 25 C 1.43983 * 105.45032 * 342.68290 * 24 22 21 26 26 O 1.36397 * 131.32656 * 180.02562 * 21 20 19 27 27 H 1.09003 * 109.46868 * 299.99686 * 1 2 3 28 28 H 1.08999 * 109.47184 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47295 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46808 * 299.99945 * 3 2 1 32 32 H 1.09001 * 109.47291 * 59.99682 * 3 2 1 33 33 H 0.96994 * 119.99953 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46850 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47069 * 59.99760 * 12 2 1 36 36 H 0.96997 * 120.00183 * 359.97438 * 13 12 2 37 37 H 1.07995 * 119.99692 * 352.94016 * 16 14 13 38 38 H 1.08000 * 119.99966 * 169.03235 * 17 16 14 39 39 H 1.08000 * 120.01623 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.87595 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.05393 * 180.27693 * 23 22 21 42 42 H 1.09001 * 110.56572 * 268.63334 * 25 24 22 43 43 H 1.09004 * 110.55676 * 145.78536 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8778 -0.4908 3.6694 15 8 2.5777 -1.4804 3.7811 16 6 1.3854 0.1952 4.8637 17 6 1.5908 -0.3433 6.0842 18 6 2.0887 -1.7211 6.2054 19 6 3.0953 -2.0251 7.1291 20 6 3.5602 -3.3168 7.2400 21 6 3.0341 -4.3211 6.4377 22 6 2.0300 -4.0254 5.5142 23 6 1.5541 -2.7341 5.4014 24 8 1.6895 -5.1738 4.8588 25 6 2.7751 -6.0887 5.0987 26 8 3.3192 -5.6526 6.3583 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 0.7088 1.1614 -3.4843 34 1 3.1301 -0.7216 1.2489 35 1 1.6768 -1.7489 1.2493 36 1 0.9944 0.7582 2.3564 37 1 0.8574 1.1325 4.7689 38 1 1.3894 0.2381 6.9718 39 1 3.5080 -1.2470 7.7540 40 1 4.3367 -3.5496 7.9536 41 1 0.7741 -2.5053 4.6903 42 1 3.5237 -6.0098 4.3104 43 1 2.4044 -7.1109 5.1752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493304967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:54 Heat of formation + Delta-G solvation = -65.408683 kcal Electronic energy + Delta-G solvation = -26411.943523 eV Core-core repulsion = 22616.354375 eV Total energy + Delta-G solvation = -3795.589148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.07198 -40.93031 -38.98533 -37.94166 -37.27568 -34.96733 -34.36114 -32.74593 -31.40145 -30.20334 -27.60558 -27.57067 -27.13324 -26.61751 -24.62178 -23.81709 -22.79525 -20.75285 -20.46812 -19.11329 -18.90024 -18.31106 -17.97671 -17.52868 -17.00472 -16.70732 -16.25121 -16.18500 -15.48973 -15.33325 -15.17237 -14.92701 -14.75658 -14.33553 -14.30794 -14.14246 -13.98279 -13.86291 -13.60004 -13.19804 -13.13439 -12.94544 -12.69912 -12.59428 -12.27214 -12.23877 -12.15296 -11.85083 -11.49594 -11.25541 -10.82102 -10.68390 -10.58662 -10.41239 -9.87533 -9.37239 -8.80527 -8.04291 -6.19888 -0.31089 0.33281 0.79810 1.38920 1.43061 1.52372 1.83698 2.38980 2.42997 2.56149 2.57968 2.74354 3.19139 3.50292 3.77383 3.80320 4.01619 4.05680 4.17472 4.23579 4.27442 4.44365 4.50229 4.55770 4.65717 4.70890 4.97161 4.99757 5.05146 5.08522 5.11471 5.18070 5.18628 5.20530 5.37704 5.41634 5.45483 5.62434 5.65297 5.66383 5.68008 6.14444 6.16330 6.20861 6.42392 6.78289 6.84358 7.43186 7.47865 8.94726 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.003277 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.910062 B = 8541.650304 C = 9773.529948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.040 0.960 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.153 3.847 13 N -0.706 5.706 14 C 0.517 3.483 15 O -0.578 6.578 16 C -0.210 4.210 17 C -0.012 4.012 18 C -0.068 4.068 19 C -0.082 4.082 20 C -0.117 4.117 21 C 0.018 3.982 22 C -0.014 4.014 23 C -0.035 4.035 24 O -0.337 6.337 25 C 0.207 3.793 26 O -0.321 6.321 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.409 0.591 37 H 0.171 0.829 38 H 0.192 0.808 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -2.035 21.345 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.028 3.972 13 N -0.357 5.357 14 C 0.308 3.692 15 O -0.460 6.460 16 C -0.230 4.230 17 C -0.031 4.031 18 C -0.069 4.069 19 C -0.099 4.099 20 C -0.135 4.135 21 C -0.027 4.027 22 C -0.057 4.057 23 C -0.054 4.054 24 O -0.254 6.254 25 C 0.096 3.904 26 O -0.237 6.237 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.246 0.754 37 H 0.189 0.811 38 H 0.209 0.791 39 H 0.196 0.804 40 H 0.177 0.823 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.053 -2.829 21.233 21.446 hybrid contribution 0.121 -0.728 -1.956 2.091 sum 1.173 -3.558 19.277 19.637 Atomic orbital electron populations 1.21659 0.97095 0.98458 1.00502 1.18362 0.93243 0.93127 0.90277 1.21654 0.97807 0.97709 1.00526 1.21296 1.31654 1.12054 0.91766 0.94165 1.25431 0.95139 0.95597 1.00887 1.69905 1.36974 1.23228 1.23561 0.85732 0.78172 0.78726 0.80330 1.20255 1.20626 1.20518 1.21149 0.96661 0.94722 0.84643 1.46135 1.52284 1.31870 1.05428 1.19306 0.80875 0.84094 0.84963 1.90860 1.40531 1.27593 1.87040 1.23240 1.05123 1.03686 0.90955 1.22690 0.90938 0.91003 0.98455 1.18920 0.98258 0.93432 0.96278 1.21395 0.95188 0.95832 0.97510 1.20301 1.02099 0.89952 1.01136 1.20328 0.97923 0.84451 0.99949 1.19875 0.99408 0.88884 0.97560 1.20053 1.00538 0.87914 0.96904 1.87311 1.43948 1.22191 1.71978 1.25962 0.85125 0.95737 0.83606 1.87236 1.76955 1.19837 1.39709 0.94211 0.91863 0.96696 0.96475 0.91894 0.94146 0.92986 0.94798 0.95142 0.75420 0.81118 0.79139 0.80370 0.82314 0.87637 0.89599 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.36 0.50 -52.92 -0.03 2.33 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.47 8.01 25.60 0.21 -28.26 16 5 H 0.04 2.24 7.74 -2.91 -0.02 2.21 16 6 C 0.03 1.56 5.15 84.65 0.44 1.99 16 7 N -0.90 -48.03 9.35 21.45 0.20 -47.83 16 8 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.60 4.50 86.38 0.39 6.99 16 13 N -0.71 -23.97 4.95 -467.49 -2.32 -26.29 16 14 C 0.52 16.67 6.79 86.33 0.59 17.25 16 15 O -0.58 -23.01 12.16 -4.41 -0.05 -23.06 16 16 C -0.21 -4.29 9.91 23.61 0.23 -4.06 16 17 C -0.01 -0.20 9.80 23.82 0.23 0.03 16 18 C -0.07 -1.64 4.53 -20.15 -0.09 -1.74 16 19 C -0.08 -1.59 9.78 22.56 0.22 -1.37 16 20 C -0.12 -2.62 10.04 22.30 0.22 -2.39 16 21 C 0.02 0.52 7.16 22.75 0.16 0.68 16 22 C -0.01 -0.45 7.13 22.56 0.16 -0.29 16 23 C -0.04 -1.11 6.60 22.65 0.15 -0.96 16 24 O -0.34 -11.16 11.41 -76.57 -0.87 -12.03 16 25 C 0.21 5.02 8.88 113.37 1.01 6.03 16 26 O -0.32 -8.85 11.40 -74.85 -0.85 -9.70 16 27 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 3.10 6.07 -2.38 -0.01 3.09 16 32 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 33 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.41 11.83 6.14 -92.71 -0.57 11.26 16 37 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.11 3.63 7.03 -2.91 -0.02 3.61 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -70.92 351.25 3.65 -67.27 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.47 Total: 19.74 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.05 Total: -13.20 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.12 Total: -74.12 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.78 Total: -44.79 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.92 3.65 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493304967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.863 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds