Wall clock time and date at job start Tue Mar 31 2020 13:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47688 * 2 1 4 4 H 1.09004 * 109.47146 * 304.24773 * 3 2 1 5 5 C 1.50690 * 109.47633 * 184.24725 * 3 2 1 6 6 H 1.08001 * 120.00228 * 239.99606 * 5 3 2 7 7 C 1.37882 * 120.00419 * 60.00140 * 5 3 2 8 8 N 1.31517 * 119.99161 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00338 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47471 * 89.99986 * 9 7 5 11 11 H 1.48509 * 109.46971 * 209.99844 * 9 7 5 12 12 H 1.48497 * 109.47265 * 329.99548 * 9 7 5 13 13 N 1.46907 * 109.46946 * 64.24310 * 3 2 1 14 14 C 1.46897 * 111.00039 * 205.87544 * 13 3 2 15 15 C 1.52995 * 109.47186 * 174.76860 * 14 13 3 16 16 O 1.42901 * 109.46941 * 65.00132 * 15 14 13 17 17 C 1.35902 * 116.99871 * 179.97438 * 16 15 14 18 18 C 1.38749 * 120.05959 * 0.02562 * 17 16 15 19 19 C 1.38117 * 119.94660 * 179.72082 * 18 17 16 20 20 C 1.38287 * 120.05517 * 0.27489 * 19 18 17 21 21 C 1.38234 * 120.11279 * 0.02562 * 20 19 18 22 22 C 1.38165 * 120.05840 * 359.97438 * 21 20 19 23 23 C 1.50703 * 120.03318 * 180.02562 * 22 21 20 24 24 F 1.39895 * 109.46766 * 359.97438 * 23 22 21 25 25 F 1.39905 * 109.46896 * 119.99924 * 23 22 21 26 26 F 1.39901 * 109.46995 * 239.99874 * 23 22 21 27 27 H 1.08998 * 109.46809 * 294.92178 * 1 2 3 28 28 H 1.09005 * 109.46743 * 54.92031 * 1 2 3 29 29 H 1.08994 * 109.46784 * 174.92031 * 1 2 3 30 30 H 1.09000 * 109.47071 * 239.99900 * 2 1 3 31 31 H 1.09002 * 109.46945 * 120.00268 * 2 1 3 32 32 H 0.97002 * 119.99515 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99814 * 81.92465 * 13 3 2 34 34 H 1.09010 * 109.47379 * 54.77264 * 14 13 3 35 35 H 1.08996 * 109.47397 * 294.77284 * 14 13 3 36 36 H 1.09003 * 109.47504 * 305.00383 * 15 14 13 37 37 H 1.08997 * 109.47453 * 184.99864 * 15 14 13 38 38 H 1.08000 * 120.02274 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97329 * 180.25466 * 19 18 17 40 40 H 1.08001 * 119.94559 * 179.97438 * 20 19 18 41 41 H 1.08007 * 119.97810 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6160 1.9778 -0.8495 5 6 3.5434 1.4437 -0.1052 6 1 4.1390 1.8917 0.6764 7 6 4.1584 0.8730 -1.1993 8 7 3.4330 0.3271 -2.1509 9 14 6.0218 0.8740 -1.3294 10 1 6.5630 -0.3553 -0.6960 11 1 6.4182 0.9091 -2.7602 12 1 6.5659 2.0689 -0.6356 13 7 1.6360 2.1047 1.2475 14 6 1.5393 3.5590 1.0640 15 6 0.9923 4.1990 2.3415 16 8 1.9281 4.0135 3.4055 17 6 1.5929 4.5267 4.6184 18 6 0.3877 5.1946 4.7814 19 6 0.0468 5.7102 6.0165 20 6 0.9080 5.5662 7.0889 21 6 2.1121 4.9066 6.9276 22 6 2.4578 4.3890 5.6941 23 6 3.7704 3.6695 5.5191 24 9 4.4596 3.6542 6.7364 25 9 3.5301 2.3559 5.1021 26 9 4.5401 4.3311 4.5563 27 1 -0.3633 0.4330 0.9320 28 1 -0.3633 0.5907 -0.8410 29 1 -0.3633 -1.0236 -0.0910 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8657 -0.0747 -2.9205 33 1 2.2687 1.8764 1.9995 34 1 0.8685 3.7766 0.2327 35 1 2.5279 3.9646 0.8489 36 1 0.0444 3.7302 2.6056 37 1 0.8369 5.2650 2.1761 38 1 -0.2850 5.3077 3.9441 39 1 -0.8930 6.2266 6.1449 40 1 0.6398 5.9704 8.0538 41 1 2.7832 4.7957 7.7665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517038759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:24 Heat of formation + Delta-G solvation = -171.819335 kcal Electronic energy + Delta-G solvation = -27308.132703 eV Core-core repulsion = 22966.072503 eV Total energy + Delta-G solvation = -4342.060200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.92758 -47.50418 -47.31295 -40.37442 -37.82661 -36.05336 -32.90657 -32.17349 -31.31429 -30.22069 -28.42606 -25.92351 -25.84666 -23.42236 -22.53962 -22.11158 -20.95229 -19.49941 -18.88809 -18.24971 -18.23194 -17.50826 -16.65491 -15.99231 -15.88617 -15.31722 -14.81162 -14.68284 -14.32587 -14.28186 -14.04756 -13.81310 -13.61574 -13.60333 -13.51463 -13.46831 -12.87496 -12.82710 -12.63757 -12.26584 -12.01747 -11.71765 -11.54640 -11.21618 -11.11907 -11.04161 -10.86976 -10.75513 -10.58961 -10.09453 -9.58211 -9.50347 -9.46793 -9.04110 -8.50021 -8.35787 -7.28313 -5.97599 -4.09701 0.75193 1.12074 2.79537 3.09892 3.30304 3.30443 3.37137 3.41719 3.86499 4.11968 4.43117 4.59341 4.61165 4.68064 4.87124 5.02083 5.04136 5.23036 5.23609 5.28795 5.46313 5.51475 5.83314 5.89771 5.93194 6.10736 6.15922 6.39481 6.42402 6.49250 6.51413 6.71246 7.12568 7.17100 7.23793 7.44378 7.59733 7.80457 8.09979 8.16191 8.32608 8.66482 9.02542 9.58048 11.02753 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004059 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.662365 B = 6895.867059 C = 8066.686951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.688 5.688 14 C 0.067 3.933 15 C 0.061 3.939 16 O -0.297 6.297 17 C 0.192 3.808 18 C -0.215 4.215 19 C -0.048 4.048 20 C -0.170 4.170 21 C -0.036 4.036 22 C -0.225 4.225 23 C 0.516 3.484 24 F -0.185 7.185 25 F -0.168 7.168 26 F -0.173 7.173 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.336 0.664 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 11.224 16.666 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.063 4.063 15 C -0.013 4.013 16 O -0.209 6.209 17 C 0.144 3.856 18 C -0.233 4.233 19 C -0.067 4.067 20 C -0.188 4.188 21 C -0.054 4.054 22 C -0.227 4.227 23 C 0.462 3.538 24 F -0.167 7.167 25 F -0.149 7.149 26 F -0.154 7.154 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.342 10.887 16.267 20.905 hybrid contribution 2.035 0.183 -0.301 2.065 sum -5.307 11.070 15.966 20.139 Atomic orbital electron populations 1.21685 0.99057 0.98290 1.00226 1.21497 0.92011 0.99221 1.01768 1.19157 0.92844 0.91222 0.86079 0.95068 1.21886 0.92696 1.37931 1.05807 0.92719 1.24918 0.97964 0.94961 0.95619 1.69881 1.34857 1.38142 1.09603 0.86663 0.86137 0.78543 0.77098 1.20596 1.21239 1.19996 1.60959 1.55729 1.04940 1.10228 1.21832 1.00297 0.91517 0.92694 1.23268 0.92261 0.99744 0.86062 1.86235 1.46540 1.72147 1.15940 1.18679 0.91862 0.89783 0.85254 1.21316 0.97289 1.04806 0.99922 1.21166 0.98690 0.94963 0.91834 1.20992 0.94761 1.03366 0.99718 1.20855 0.96625 0.93176 0.94793 1.19378 0.96075 1.11741 0.95498 1.17998 0.84531 0.77746 0.73520 1.93124 1.81746 1.96527 1.45283 1.93267 1.94335 1.37193 1.90099 1.93235 1.77377 1.80584 1.64204 0.93566 0.94503 0.95674 0.89136 0.95035 0.92936 0.84706 0.89799 0.94097 0.90986 0.92075 0.84239 0.85044 0.84992 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.21 5.30 1.98 -68.87 -0.14 5.16 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.54 -14.89 8.47 -34.44 -0.29 -15.18 16 6 H 0.05 1.53 7.73 -52.49 -0.41 1.12 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.69 -14.39 5.73 -107.95 -0.62 -15.01 16 14 C 0.07 1.19 5.92 -3.83 -0.02 1.17 16 15 C 0.06 0.86 5.09 37.15 0.19 1.05 16 16 O -0.30 -4.70 8.66 -19.43 -0.17 -4.87 16 17 C 0.19 2.61 6.57 -39.21 -0.26 2.35 16 18 C -0.21 -2.27 9.04 -39.44 -0.36 -2.63 16 19 C -0.05 -0.41 10.04 -39.61 -0.40 -0.81 16 20 C -0.17 -1.42 10.04 -39.56 -0.40 -1.82 16 21 C -0.04 -0.37 9.43 -39.61 -0.37 -0.74 16 22 C -0.22 -2.97 5.38 -104.47 -0.56 -3.54 16 23 C 0.52 7.74 2.99 36.01 0.11 7.85 16 24 F -0.19 -2.48 15.97 2.25 0.04 -2.45 16 25 F -0.17 -2.86 16.93 2.25 0.04 -2.82 16 26 F -0.17 -2.89 16.97 2.25 0.04 -2.85 16 27 H 0.05 0.90 7.88 -51.93 -0.41 0.49 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 2.43 5.97 -51.93 -0.31 2.12 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.34 7.43 8.09 -39.29 -0.32 7.12 16 34 H 0.08 1.41 7.92 -51.92 -0.41 1.00 16 35 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 36 H 0.07 0.93 7.66 -51.93 -0.40 0.54 16 37 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 38 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.14 1.17 7.16 -52.48 -0.38 0.79 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -29.46 352.87 -7.56 -37.02 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.43 Total: 4.05 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.38 Total: -10.48 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.01 Total: -39.53 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.17 Total: -4.87 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 0.11 Total: -8.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.46 -7.56 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517038759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.803 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds