Wall clock time and date at job start Tue Mar 31 2020 13:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47688 * 2 1 4 4 H 1.09004 * 109.47146 * 304.24773 * 3 2 1 5 5 C 1.50690 * 109.47633 * 184.24725 * 3 2 1 6 6 H 1.08001 * 120.00228 * 239.99606 * 5 3 2 7 7 C 1.37882 * 120.00419 * 60.00140 * 5 3 2 8 8 N 1.31517 * 119.99161 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00338 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47471 * 89.99986 * 9 7 5 11 11 H 1.48509 * 109.46971 * 209.99844 * 9 7 5 12 12 H 1.48497 * 109.47265 * 329.99548 * 9 7 5 13 13 N 1.46907 * 109.46946 * 64.24310 * 3 2 1 14 14 C 1.46897 * 111.00039 * 205.87544 * 13 3 2 15 15 C 1.52995 * 109.47186 * 174.76860 * 14 13 3 16 16 O 1.42901 * 109.46941 * 65.00132 * 15 14 13 17 17 C 1.35902 * 116.99871 * 179.97438 * 16 15 14 18 18 C 1.38749 * 120.05959 * 0.02562 * 17 16 15 19 19 C 1.38117 * 119.94660 * 179.72082 * 18 17 16 20 20 C 1.38287 * 120.05517 * 0.27489 * 19 18 17 21 21 C 1.38234 * 120.11279 * 0.02562 * 20 19 18 22 22 C 1.38165 * 120.05840 * 359.97438 * 21 20 19 23 23 C 1.50703 * 120.03318 * 180.02562 * 22 21 20 24 24 F 1.39895 * 109.46766 * 359.97438 * 23 22 21 25 25 F 1.39905 * 109.46896 * 119.99924 * 23 22 21 26 26 F 1.39901 * 109.46995 * 239.99874 * 23 22 21 27 27 H 1.08998 * 109.46809 * 294.92178 * 1 2 3 28 28 H 1.09005 * 109.46743 * 54.92031 * 1 2 3 29 29 H 1.08994 * 109.46784 * 174.92031 * 1 2 3 30 30 H 1.09000 * 109.47071 * 239.99900 * 2 1 3 31 31 H 1.09002 * 109.46945 * 120.00268 * 2 1 3 32 32 H 0.97002 * 119.99515 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99814 * 81.92465 * 13 3 2 34 34 H 1.09010 * 109.47379 * 54.77264 * 14 13 3 35 35 H 1.08996 * 109.47397 * 294.77284 * 14 13 3 36 36 H 1.09003 * 109.47504 * 305.00383 * 15 14 13 37 37 H 1.08997 * 109.47453 * 184.99864 * 15 14 13 38 38 H 1.08000 * 120.02274 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97329 * 180.25466 * 19 18 17 40 40 H 1.08001 * 119.94559 * 179.97438 * 20 19 18 41 41 H 1.08007 * 119.97810 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6160 1.9778 -0.8495 5 6 3.5434 1.4437 -0.1052 6 1 4.1390 1.8917 0.6764 7 6 4.1584 0.8730 -1.1993 8 7 3.4330 0.3271 -2.1509 9 14 6.0218 0.8740 -1.3294 10 1 6.5630 -0.3553 -0.6960 11 1 6.4182 0.9091 -2.7602 12 1 6.5659 2.0689 -0.6356 13 7 1.6360 2.1047 1.2475 14 6 1.5393 3.5590 1.0640 15 6 0.9923 4.1990 2.3415 16 8 1.9281 4.0135 3.4055 17 6 1.5929 4.5267 4.6184 18 6 0.3877 5.1946 4.7814 19 6 0.0468 5.7102 6.0165 20 6 0.9080 5.5662 7.0889 21 6 2.1121 4.9066 6.9276 22 6 2.4578 4.3890 5.6941 23 6 3.7704 3.6695 5.5191 24 9 4.4596 3.6542 6.7364 25 9 3.5301 2.3559 5.1021 26 9 4.5401 4.3311 4.5563 27 1 -0.3633 0.4330 0.9320 28 1 -0.3633 0.5907 -0.8410 29 1 -0.3633 -1.0236 -0.0910 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8657 -0.0747 -2.9205 33 1 2.2687 1.8764 1.9995 34 1 0.8685 3.7766 0.2327 35 1 2.5279 3.9646 0.8489 36 1 0.0444 3.7302 2.6056 37 1 0.8369 5.2650 2.1761 38 1 -0.2850 5.3077 3.9441 39 1 -0.8930 6.2266 6.1449 40 1 0.6398 5.9704 8.0538 41 1 2.7832 4.7957 7.7665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517038759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:24 Heat of formation + Delta-G solvation = -188.605593 kcal Electronic energy + Delta-G solvation = -27308.860610 eV Core-core repulsion = 22966.072503 eV Total energy + Delta-G solvation = -4342.788107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.11926 -48.66990 -48.57869 -41.28139 -38.84193 -37.76741 -34.64920 -33.31366 -32.91174 -31.15192 -29.89023 -27.70729 -26.90621 -24.89382 -23.99800 -23.02469 -22.15124 -21.40356 -19.89163 -19.45586 -19.39007 -18.75588 -18.44127 -17.20416 -16.85376 -16.72167 -16.04618 -15.84456 -15.60698 -15.44789 -15.41484 -15.27352 -15.03690 -14.84867 -14.77572 -14.74084 -14.49369 -14.03150 -13.61334 -13.58657 -13.51304 -13.15665 -13.02627 -12.85525 -12.61170 -12.55419 -12.44818 -12.14577 -11.96447 -11.83889 -11.52268 -11.31719 -11.00997 -10.48320 -10.26387 -9.34616 -9.10361 -8.08456 -6.29414 -0.03291 0.34239 1.34006 1.36081 1.45250 1.71215 2.11389 2.37729 2.53931 2.81484 3.07149 3.11102 3.44569 3.59112 3.81793 3.90223 4.16405 4.21456 4.28844 4.35755 4.44349 4.45717 4.60013 4.76098 4.76766 4.81132 4.94330 5.00768 5.13257 5.17312 5.27101 5.41820 5.42673 5.50653 5.62305 5.71528 5.75559 6.08812 6.17975 6.28317 6.36421 6.75900 6.96526 7.41423 8.88029 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004059 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.662365 B = 6895.867059 C = 8066.686951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.221 3.779 4 H 0.008 0.992 5 C -0.561 4.561 6 H 0.040 0.960 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.065 3.935 15 C 0.072 3.928 16 O -0.330 6.330 17 C 0.162 3.838 18 C -0.217 4.217 19 C -0.040 4.040 20 C -0.158 4.158 21 C -0.042 4.042 22 C -0.246 4.246 23 C 0.509 3.491 24 F -0.178 7.178 25 F -0.187 7.187 26 F -0.189 7.189 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.328 0.672 34 H 0.093 0.907 35 H 0.013 0.987 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.650 12.723 18.519 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.026 0.974 5 C -0.600 4.600 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.065 4.065 15 C -0.002 4.002 16 O -0.243 6.243 17 C 0.115 3.885 18 C -0.235 4.235 19 C -0.058 4.058 20 C -0.175 4.175 21 C -0.060 4.060 22 C -0.248 4.248 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.168 7.168 26 F -0.171 7.171 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.031 0.969 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.111 12.396 18.132 23.779 hybrid contribution 2.569 -0.223 -0.777 2.694 sum -6.542 12.173 17.355 22.185 Atomic orbital electron populations 1.21532 0.95984 0.99629 1.00780 1.21359 0.94732 0.98276 0.99799 1.18958 0.91268 0.91724 0.86840 0.97404 1.22140 0.94329 1.37925 1.05588 0.94189 1.25573 1.01803 0.94751 0.95429 1.69984 1.36230 1.38466 1.09890 0.85779 0.81554 0.78288 0.77342 1.20208 1.20266 1.20316 1.60913 1.54590 1.06910 1.08144 1.21913 0.99339 0.89534 0.95715 1.23111 0.91894 1.01134 0.84092 1.86164 1.47553 1.73433 1.17180 1.18968 0.93521 0.91619 0.84395 1.21591 0.96192 1.04141 1.01607 1.21653 0.99851 0.93590 0.90665 1.21466 0.93356 1.01421 1.01295 1.21151 0.97898 0.93045 0.93930 1.19474 0.95161 1.13154 0.96995 1.18390 0.85633 0.77169 0.73266 1.93122 1.81802 1.96461 1.44570 1.93218 1.94481 1.38702 1.90394 1.93191 1.78031 1.80788 1.65062 0.92393 0.94564 0.93819 0.92011 0.95968 0.92777 0.85627 0.88919 0.96886 0.89613 0.89032 0.82654 0.81268 0.81397 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.73 71.98 0.70 -4.20 16 2 C -0.10 -5.06 5.45 30.59 0.17 -4.89 16 3 C 0.22 11.22 1.98 44.16 0.09 11.31 16 4 H 0.01 0.44 7.70 -2.38 -0.02 0.42 16 5 C -0.56 -31.75 8.47 25.60 0.22 -31.54 16 6 H 0.04 2.33 7.73 -2.91 -0.02 2.31 16 7 C 0.02 1.40 5.29 84.66 0.45 1.85 16 8 N -0.91 -52.45 11.29 21.45 0.24 -52.21 16 9 Si 0.94 45.24 29.54 68.60 2.03 47.27 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 N -0.68 -28.95 5.73 -495.46 -2.84 -31.79 16 14 C 0.06 2.35 5.92 86.30 0.51 2.86 16 15 C 0.07 1.95 5.09 71.98 0.37 2.31 16 16 O -0.33 -10.54 8.66 -92.44 -0.80 -11.34 16 17 C 0.16 4.26 6.57 22.51 0.15 4.41 16 18 C -0.22 -3.97 9.04 22.36 0.20 -3.77 16 19 C -0.04 -0.50 10.04 22.25 0.22 -0.27 16 20 C -0.16 -1.97 10.04 22.28 0.22 -1.75 16 21 C -0.04 -0.77 9.43 22.25 0.21 -0.56 16 22 C -0.25 -6.39 5.38 -19.77 -0.11 -6.50 16 23 C 0.51 15.75 2.99 71.24 0.21 15.96 16 24 F -0.18 -4.82 15.97 44.97 0.72 -4.10 16 25 F -0.19 -6.69 16.93 44.97 0.76 -5.92 16 26 F -0.19 -6.64 16.97 44.97 0.76 -5.87 16 27 H 0.06 2.18 7.88 -2.39 -0.02 2.16 16 28 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 3.40 5.97 -2.39 -0.01 3.38 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.33 15.07 8.09 -89.69 -0.73 14.34 16 34 H 0.09 3.13 7.92 -2.38 -0.02 3.11 16 35 H 0.01 0.53 8.11 -2.39 -0.02 0.51 16 36 H 0.09 2.06 7.66 -2.39 -0.02 2.05 16 37 H 0.09 1.89 7.66 -2.39 -0.02 1.87 16 38 H 0.16 2.24 6.30 -2.91 -0.02 2.22 16 39 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 41 H 0.16 2.24 7.16 -2.91 -0.02 2.22 16 Total: -1.00 -66.58 352.87 4.81 -61.76 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.33 Total: 16.99 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 3.61 Total: -14.78 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.60 Total: -84.00 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.80 Total: -11.34 kcal Atomic # 9 Polarization: -18.14 SS G_CDS: 2.24 Total: -15.90 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.58 4.81 -61.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517038759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.842 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds