Wall clock time and date at job start Tue Mar 31 2020 11:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30314 * 126.34909 * 2 1 4 4 N 1.28509 * 110.14203 * 179.97438 * 3 2 1 5 5 C 1.31290 * 109.92496 * 0.02562 * 4 3 2 6 6 S 1.76198 * 126.50701 * 180.02562 * 5 4 3 7 7 C 1.81004 * 99.99832 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47109 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47261 * 299.99807 * 8 7 6 10 10 C 1.52992 * 109.47151 * 60.00149 * 8 7 6 11 11 C 1.50707 * 109.46906 * 180.02562 * 8 7 6 12 12 H 1.07997 * 119.99961 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99827 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99989 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47125 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47022 * 119.99813 * 15 13 11 18 18 H 1.48493 * 109.46879 * 240.00069 * 15 13 11 19 19 N 1.36805 * 106.99644 * 359.97438 * 5 4 3 20 20 C 1.40244 * 127.17933 * 179.74190 * 19 5 4 21 21 C 1.38810 * 120.06075 * 244.74809 * 20 19 5 22 22 C 1.38135 * 119.93466 * 179.72167 * 21 20 19 23 23 C 1.38274 * 120.05794 * 0.57430 * 22 21 20 24 24 C 1.38274 * 120.13393 * 359.67782 * 23 22 21 25 25 C 1.38122 * 120.06085 * 0.04735 * 24 23 22 26 26 H 1.08997 * 109.47482 * 269.99558 * 1 2 3 27 27 H 1.09003 * 109.47499 * 29.99789 * 1 2 3 28 28 H 1.08999 * 109.47112 * 149.99130 * 1 2 3 29 29 H 1.08997 * 109.47184 * 300.00471 * 7 6 5 30 30 H 1.09001 * 109.47112 * 60.00091 * 7 6 5 31 31 H 1.09003 * 109.46810 * 59.99859 * 9 8 7 32 32 H 1.08995 * 109.47473 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47165 * 300.00775 * 9 8 7 34 34 H 1.09000 * 109.47662 * 60.00472 * 10 8 7 35 35 H 1.09009 * 109.46916 * 180.02562 * 10 8 7 36 36 H 1.08999 * 109.47225 * 299.99460 * 10 8 7 37 37 H 0.97001 * 119.99767 * 179.97438 * 14 13 11 38 38 H 1.08000 * 120.03742 * 359.97438 * 21 20 19 39 39 H 1.07997 * 119.96951 * 180.27392 * 22 21 20 40 40 H 1.08000 * 119.92930 * 179.70325 * 23 22 21 41 41 H 1.08003 * 119.96694 * 180.02562 * 24 23 22 42 42 H 1.08008 * 120.02842 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2794 1.0496 0.0000 4 7 3.5134 0.6909 0.0005 5 6 3.5985 -0.6192 0.0004 6 16 5.0798 -1.5734 0.0016 7 6 6.3093 -0.2451 0.0022 8 6 7.7143 -0.8507 0.0026 9 6 7.8968 -1.7150 1.2518 10 6 7.8977 -1.7146 -1.2466 11 6 8.7380 0.2554 0.0037 12 1 8.4184 1.2870 0.0045 13 6 10.0826 -0.0498 0.0048 14 7 10.4718 -1.3060 0.0044 15 14 11.3515 1.3211 0.0070 16 1 10.6602 2.6355 0.0078 17 1 12.2003 1.2081 1.2203 18 1 12.2025 1.2097 -1.2048 19 7 2.3189 -1.1031 0.0003 20 6 1.9214 -2.4481 -0.0050 21 6 1.2312 -2.9649 -1.0928 22 6 0.8459 -4.2914 -1.0977 23 6 1.1369 -5.1011 -0.0152 24 6 1.8198 -4.5877 1.0720 25 6 2.2124 -3.2635 1.0800 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5140 29 1 6.1796 0.3705 -0.8879 30 1 6.1784 0.3707 0.8920 31 1 7.1563 -2.5149 1.2515 32 1 8.8979 -2.1461 1.2524 33 1 7.7661 -1.0994 2.1418 34 1 7.7678 -1.0989 -2.1366 35 1 8.8986 -2.1465 -1.2461 36 1 7.1573 -2.5146 -1.2470 37 1 11.4177 -1.5207 0.0048 38 1 0.9991 -2.3316 -1.9362 39 1 0.3127 -4.6952 -1.9456 40 1 0.8305 -6.1367 -0.0192 41 1 2.0460 -5.2227 1.9159 42 1 2.7462 -2.8631 1.9293 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519614829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:24 Heat of formation + Delta-G solvation = 96.931911 kcal Electronic energy + Delta-G solvation = -23758.658732 eV Core-core repulsion = 20445.154822 eV Total energy + Delta-G solvation = -3313.503909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.89173 -39.47799 -36.02907 -34.91379 -32.43696 -31.54829 -31.33393 -29.92418 -27.96737 -26.08902 -25.70737 -25.12588 -23.91249 -23.19066 -22.08008 -20.83685 -19.16213 -18.30733 -16.78705 -16.45591 -16.32668 -15.97920 -14.97986 -14.72683 -14.70427 -14.31571 -13.88216 -13.83838 -13.43362 -13.22580 -13.00694 -12.92227 -12.64855 -12.32314 -12.09473 -11.71966 -11.45443 -11.37323 -11.28592 -10.88713 -10.82647 -10.63689 -10.46285 -10.34685 -10.17176 -9.89253 -9.70206 -9.50023 -9.46693 -9.36652 -9.09021 -8.67720 -8.38598 -7.14887 -6.00766 -4.11148 0.69362 0.96439 1.49164 1.74497 2.56909 2.89310 2.92394 3.29012 3.29552 3.37559 3.43175 4.29206 4.41811 4.50333 4.53806 4.70803 4.79728 4.98884 5.07781 5.23587 5.25951 5.27251 5.44977 5.52935 5.59875 5.74157 5.92927 6.00779 6.03701 6.08290 6.12205 6.14280 6.40077 6.53970 6.80631 6.89196 6.97487 7.01259 7.02681 7.34104 7.56736 7.71771 8.00927 8.13684 8.38040 8.76939 8.88593 9.54343 11.00576 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.003535 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.383371 B = 7919.684338 C = 8933.297566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.173 3.827 3 N -0.284 5.284 4 N -0.293 5.293 5 C 0.173 3.827 6 S -0.009 6.009 7 C -0.069 4.069 8 C 0.080 3.920 9 C -0.134 4.134 10 C -0.135 4.135 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.429 5.429 20 C 0.117 3.883 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.107 4.107 24 C -0.104 4.104 25 C -0.096 4.096 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.015 0.985 32 H 0.088 0.912 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.087 0.913 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 -8.896 0.078 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.096 4.096 3 N -0.123 5.123 4 N -0.135 5.135 5 C -0.199 4.199 6 S 0.222 5.778 7 C -0.218 4.218 8 C 0.077 3.923 9 C -0.192 4.192 10 C -0.193 4.193 11 C -0.542 4.542 12 H 0.078 0.922 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.122 5.122 20 C 0.026 3.974 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.131 -8.647 0.080 21.910 hybrid contribution 0.187 0.844 -0.020 0.865 sum -19.944 -7.803 0.060 21.416 Atomic orbital electron populations 1.20181 0.83785 1.04235 1.03902 1.25131 0.96711 0.81941 1.05770 1.73925 0.96825 1.23744 1.17770 1.74751 1.11281 1.06660 1.20830 1.27782 0.91102 0.95427 1.05594 1.85836 0.89229 1.11525 1.91237 1.24169 0.95736 0.96483 1.05401 1.18081 0.86428 0.94324 0.93435 1.21910 1.02408 0.97593 0.97337 1.21910 1.02406 0.97613 0.97345 1.21046 0.90112 0.92166 1.50922 0.92239 1.24875 0.98267 0.95532 0.94761 1.69819 1.15509 1.16499 1.50535 0.86500 0.81371 0.82407 0.77544 1.19702 1.21024 1.21018 1.43866 1.05445 1.05492 1.57401 1.17579 1.01956 0.81672 0.96168 1.21150 0.98454 0.96229 0.96591 1.21061 0.99996 0.92675 0.98894 1.21333 0.97605 1.00182 0.93433 1.21106 0.97717 0.94351 0.99066 1.21243 0.99017 0.94144 0.97159 0.89807 0.88695 0.90588 0.89936 0.89924 0.96616 0.89381 0.95205 0.95198 0.89390 0.96599 0.93001 0.85325 0.84913 0.85156 0.84739 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.24 36.01 0.37 -0.21 16 2 C 0.17 2.59 8.01 -153.78 -1.23 1.36 16 3 N -0.28 -5.33 12.17 33.04 0.40 -4.93 16 4 N -0.29 -6.06 11.60 30.73 0.36 -5.71 16 5 C 0.17 3.24 8.01 -88.08 -0.71 2.54 16 6 S -0.01 -0.17 19.04 -107.50 -2.05 -2.21 16 7 C -0.07 -1.51 4.18 37.16 0.16 -1.36 16 8 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 9 C -0.13 -3.15 8.01 37.16 0.30 -2.85 16 10 C -0.13 -3.18 8.01 37.15 0.30 -2.88 16 11 C -0.50 -13.37 8.01 -34.44 -0.28 -13.64 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 14 N -0.89 -23.84 9.35 55.43 0.52 -23.33 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 N -0.43 -6.65 2.85 -57.63 -0.16 -6.81 16 20 C 0.12 1.47 5.30 -83.58 -0.44 1.02 16 21 C -0.10 -1.06 9.02 -39.41 -0.36 -1.41 16 22 C -0.11 -0.84 10.04 -39.61 -0.40 -1.23 16 23 C -0.11 -0.79 10.04 -39.55 -0.40 -1.19 16 24 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 25 C -0.10 -1.09 9.92 -39.41 -0.39 -1.48 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.57 7.11 -51.93 -0.37 0.20 16 29 H 0.08 1.86 8.14 -51.92 -0.42 1.44 16 30 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 31 H 0.01 0.32 6.91 -51.93 -0.36 -0.03 16 32 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.26 6.07 -51.92 -0.32 1.95 16 36 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 37 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -30.69 358.64 -10.11 -40.80 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.91 Total: -0.04 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.65 Total: -19.11 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 1.11 Total: -40.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.05 Total: -2.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.69 -10.11 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519614829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.732 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds