Wall clock time and date at job start Tue Mar 31 2020 11:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30314 * 126.34909 * 2 1 4 4 N 1.28509 * 110.14203 * 179.97438 * 3 2 1 5 5 C 1.31290 * 109.92496 * 0.02562 * 4 3 2 6 6 S 1.76198 * 126.50701 * 180.02562 * 5 4 3 7 7 C 1.81004 * 99.99832 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47109 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47261 * 299.99807 * 8 7 6 10 10 C 1.52992 * 109.47151 * 60.00149 * 8 7 6 11 11 C 1.50707 * 109.46906 * 180.02562 * 8 7 6 12 12 H 1.07997 * 119.99961 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99827 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99989 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47125 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47022 * 119.99813 * 15 13 11 18 18 H 1.48493 * 109.46879 * 240.00069 * 15 13 11 19 19 N 1.36805 * 106.99644 * 359.97438 * 5 4 3 20 20 C 1.40244 * 127.17933 * 179.74190 * 19 5 4 21 21 C 1.38810 * 120.06075 * 244.74809 * 20 19 5 22 22 C 1.38135 * 119.93466 * 179.72167 * 21 20 19 23 23 C 1.38274 * 120.05794 * 0.57430 * 22 21 20 24 24 C 1.38274 * 120.13393 * 359.67782 * 23 22 21 25 25 C 1.38122 * 120.06085 * 0.04735 * 24 23 22 26 26 H 1.08997 * 109.47482 * 269.99558 * 1 2 3 27 27 H 1.09003 * 109.47499 * 29.99789 * 1 2 3 28 28 H 1.08999 * 109.47112 * 149.99130 * 1 2 3 29 29 H 1.08997 * 109.47184 * 300.00471 * 7 6 5 30 30 H 1.09001 * 109.47112 * 60.00091 * 7 6 5 31 31 H 1.09003 * 109.46810 * 59.99859 * 9 8 7 32 32 H 1.08995 * 109.47473 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47165 * 300.00775 * 9 8 7 34 34 H 1.09000 * 109.47662 * 60.00472 * 10 8 7 35 35 H 1.09009 * 109.46916 * 180.02562 * 10 8 7 36 36 H 1.08999 * 109.47225 * 299.99460 * 10 8 7 37 37 H 0.97001 * 119.99767 * 179.97438 * 14 13 11 38 38 H 1.08000 * 120.03742 * 359.97438 * 21 20 19 39 39 H 1.07997 * 119.96951 * 180.27392 * 22 21 20 40 40 H 1.08000 * 119.92930 * 179.70325 * 23 22 21 41 41 H 1.08003 * 119.96694 * 180.02562 * 24 23 22 42 42 H 1.08008 * 120.02842 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2794 1.0496 0.0000 4 7 3.5134 0.6909 0.0005 5 6 3.5985 -0.6192 0.0004 6 16 5.0798 -1.5734 0.0016 7 6 6.3093 -0.2451 0.0022 8 6 7.7143 -0.8507 0.0026 9 6 7.8968 -1.7150 1.2518 10 6 7.8977 -1.7146 -1.2466 11 6 8.7380 0.2554 0.0037 12 1 8.4184 1.2870 0.0045 13 6 10.0826 -0.0498 0.0048 14 7 10.4718 -1.3060 0.0044 15 14 11.3515 1.3211 0.0070 16 1 10.6602 2.6355 0.0078 17 1 12.2003 1.2081 1.2203 18 1 12.2025 1.2097 -1.2048 19 7 2.3189 -1.1031 0.0003 20 6 1.9214 -2.4481 -0.0050 21 6 1.2312 -2.9649 -1.0928 22 6 0.8459 -4.2914 -1.0977 23 6 1.1369 -5.1011 -0.0152 24 6 1.8198 -4.5877 1.0720 25 6 2.2124 -3.2635 1.0800 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5140 29 1 6.1796 0.3705 -0.8879 30 1 6.1784 0.3707 0.8920 31 1 7.1563 -2.5149 1.2515 32 1 8.8979 -2.1461 1.2524 33 1 7.7661 -1.0994 2.1418 34 1 7.7678 -1.0989 -2.1366 35 1 8.8986 -2.1465 -1.2461 36 1 7.1573 -2.5146 -1.2470 37 1 11.4177 -1.5207 0.0048 38 1 0.9991 -2.3316 -1.9362 39 1 0.3127 -4.6952 -1.9456 40 1 0.8305 -6.1367 -0.0192 41 1 2.0460 -5.2227 1.9159 42 1 2.7462 -2.8631 1.9293 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519614829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:23 Heat of formation + Delta-G solvation = 83.214555 kcal Electronic energy + Delta-G solvation = -23759.253561 eV Core-core repulsion = 20445.154822 eV Total energy + Delta-G solvation = -3314.098739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.15657 -40.24652 -37.95071 -35.98086 -33.58478 -33.50770 -32.03986 -30.80176 -29.15174 -27.80172 -27.63405 -27.17528 -24.94380 -23.98361 -23.19012 -21.92686 -20.91604 -19.46391 -18.05312 -17.83689 -17.58981 -17.22961 -16.69786 -15.88655 -15.81363 -15.38387 -15.20135 -15.12471 -14.59738 -14.52627 -14.17434 -14.01241 -13.80868 -13.58284 -13.31461 -13.21703 -13.11216 -12.74936 -12.60010 -12.50134 -12.41944 -12.28620 -12.14681 -12.05338 -11.66548 -11.53248 -11.44530 -11.37297 -10.93530 -10.60916 -10.40961 -10.05911 -9.89415 -8.64487 -8.03947 -6.20486 -0.11854 0.06025 0.28271 0.55306 1.16721 1.41257 1.45017 1.51998 1.55952 1.57541 2.45638 2.60312 3.19382 3.31948 3.79896 3.82421 3.83815 4.13867 4.17347 4.19657 4.28150 4.37542 4.42272 4.53055 4.56025 4.64356 4.67928 4.81300 4.92632 4.95250 4.98720 4.99189 5.10371 5.13655 5.28995 5.32046 5.39896 5.44724 5.60684 5.65337 5.68903 6.00713 6.06088 6.15054 6.38387 6.82139 7.43526 7.47003 8.95648 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.003535 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.383371 B = 7919.684338 C = 8933.297566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.191 3.809 3 N -0.328 5.328 4 N -0.331 5.331 5 C 0.151 3.849 6 S 0.022 5.978 7 C -0.065 4.065 8 C 0.073 3.927 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.526 4.526 12 H 0.045 0.955 13 C 0.030 3.970 14 N -0.899 5.899 15 Si 0.948 3.052 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.421 5.421 20 C 0.080 3.920 21 C -0.110 4.110 22 C -0.100 4.100 23 C -0.095 4.095 24 C -0.103 4.103 25 C -0.114 4.114 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.132 0.868 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 -11.188 -0.318 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 N -0.167 5.167 4 N -0.174 5.174 5 C -0.223 4.223 6 S 0.252 5.748 7 C -0.214 4.214 8 C 0.071 3.929 9 C -0.181 4.181 10 C -0.181 4.181 11 C -0.565 4.565 12 H 0.064 0.936 13 C -0.170 4.170 14 N -0.538 5.538 15 Si 0.775 3.225 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.112 5.112 20 C -0.009 4.009 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.134 4.134 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.596 -10.957 -0.314 25.115 hybrid contribution 0.743 1.443 0.106 1.626 sum -21.853 -9.515 -0.208 23.835 Atomic orbital electron populations 1.20489 0.79708 1.06083 1.05643 1.26152 0.98602 0.81013 1.02015 1.73839 0.96636 1.25639 1.20568 1.74634 1.12851 1.07997 1.21897 1.27614 0.92317 0.95240 1.07090 1.85372 0.88332 1.09243 1.91844 1.23772 0.96281 0.97367 1.03945 1.18069 0.87117 0.93917 0.93795 1.21745 1.01687 0.97808 0.96848 1.21748 1.01674 0.97809 0.96891 1.21280 0.91360 0.92327 1.51559 0.93631 1.25466 0.99645 0.97398 0.94495 1.69916 1.15852 1.17521 1.50514 0.85661 0.79277 0.79932 0.77678 1.20089 1.20501 1.20503 1.44009 1.04127 1.07018 1.56036 1.17931 1.04540 0.80434 0.98029 1.21301 0.98259 0.97486 0.95842 1.21470 0.98959 0.91449 0.99923 1.21790 0.95608 1.01689 0.92233 1.21417 0.97141 0.93247 1.00375 1.21272 1.00009 0.95442 0.96661 0.87933 0.87289 0.88191 0.91463 0.91391 0.94650 0.91432 0.95739 0.95776 0.91418 0.94717 0.92848 0.84972 0.81706 0.81662 0.82591 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.24 71.24 0.73 -0.27 16 2 C 0.19 5.65 8.01 137.56 1.10 6.75 16 3 N -0.33 -12.62 12.17 -49.39 -0.60 -13.22 16 4 N -0.33 -14.29 11.60 -56.69 -0.66 -14.94 16 5 C 0.15 5.81 8.01 179.46 1.44 7.25 16 6 S 0.02 0.85 19.04 -56.49 -1.08 -0.23 16 7 C -0.06 -2.93 4.18 71.98 0.30 -2.63 16 8 C 0.07 3.60 0.52 -52.93 -0.03 3.57 16 9 C -0.12 -5.84 8.01 71.98 0.58 -5.27 16 10 C -0.12 -5.89 8.01 71.98 0.58 -5.31 16 11 C -0.53 -28.80 8.01 25.60 0.21 -28.59 16 12 H 0.05 2.56 7.74 -2.91 -0.02 2.53 16 13 C 0.03 1.62 5.15 84.66 0.44 2.05 16 14 N -0.90 -49.02 9.35 21.45 0.20 -48.82 16 15 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 N -0.42 -12.92 2.85 -336.24 -0.96 -13.88 16 20 C 0.08 1.90 5.30 38.07 0.20 2.10 16 21 C -0.11 -1.92 9.02 22.38 0.20 -1.72 16 22 C -0.10 -1.12 10.04 22.25 0.22 -0.89 16 23 C -0.10 -0.96 10.04 22.29 0.22 -0.74 16 24 C -0.10 -1.46 10.04 22.25 0.22 -1.24 16 25 C -0.11 -2.44 9.92 22.38 0.22 -2.22 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.10 1.19 7.11 -2.39 -0.02 1.18 16 29 H 0.07 3.19 8.14 -2.40 -0.02 3.17 16 30 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.03 1.49 6.91 -2.39 -0.02 1.48 16 32 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 3.52 6.07 -2.38 -0.01 3.51 16 36 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 37 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -69.37 358.64 6.58 -62.79 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.01 Total: 9.90 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 6.63 Total: -27.15 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -2.02 Total: -90.87 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -1.08 Total: -0.23 kcal Total: -69.37 6.58 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519614829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.004 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds