Wall clock time and date at job start Tue Mar 31 2020 12:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38163 * 119.97722 * 89.99860 * 15 14 13 17 17 C 1.38715 * 119.94590 * 179.97438 * 16 15 14 18 18 O 1.35899 * 120.05335 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99850 * 180.02562 * 18 17 16 20 20 C 1.38748 * 119.89048 * 359.97438 * 17 16 15 21 21 C 1.38123 * 119.94205 * 0.02562 * 20 17 16 22 22 C 1.50706 * 119.97052 * 179.97438 * 21 20 17 23 23 F 1.39891 * 109.47255 * 359.97438 * 22 21 20 24 24 F 1.39902 * 109.47132 * 120.00452 * 22 21 20 25 25 F 1.39902 * 109.47075 * 239.99944 * 22 21 20 26 26 C 1.38256 * 119.97032 * 269.72159 * 15 14 13 27 27 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 28 28 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 29 29 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 30 30 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 31 31 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 32 32 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 33 33 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 34 34 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 35 35 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 36 36 H 1.08000 * 120.02916 * 359.95942 * 16 15 14 37 37 H 1.08999 * 109.47240 * 59.99682 * 19 18 17 38 38 H 1.08995 * 109.46986 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.46948 * 299.99385 * 19 18 17 40 40 H 1.07996 * 120.03206 * 179.97438 * 20 17 16 41 41 H 1.07992 * 119.94165 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7963 3.7423 -3.8154 17 6 2.4696 4.4644 -4.9538 18 8 3.0505 5.6712 -5.1843 19 6 2.6660 6.3592 -6.3764 20 6 1.5495 3.9522 -5.8573 21 6 0.9609 2.7252 -5.6209 22 6 -0.0390 2.1685 -6.6015 23 9 -0.2046 3.0680 -7.6600 24 9 0.4250 0.9451 -7.0966 25 9 -1.2660 1.9758 -5.9576 26 6 1.2917 2.0051 -4.4876 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3633 0.5896 0.8417 29 1 -0.3633 0.4342 -0.9314 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.0722 0.4283 1.9219 33 1 0.6931 1.8857 -1.4926 34 1 3.5861 1.9537 -2.0570 35 1 2.4645 0.6641 -2.5543 36 1 3.5123 4.1389 -3.1108 37 1 1.5930 6.5498 -6.3559 38 1 3.2018 7.3063 -6.4381 39 1 2.9097 5.7463 -7.2442 40 1 1.2932 4.5127 -6.7441 41 1 0.8341 1.0437 -4.3071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529545764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:43 Heat of formation + Delta-G solvation = -171.000826 kcal Electronic energy + Delta-G solvation = -26805.838849 eV Core-core repulsion = 22463.814141 eV Total energy + Delta-G solvation = -4342.024707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.31716 -47.85327 -47.75398 -40.42971 -38.13669 -36.68036 -33.56753 -31.89204 -30.98849 -29.80363 -27.83491 -26.38726 -26.03189 -24.20291 -23.58704 -22.29684 -21.14852 -19.56349 -18.74840 -18.62898 -18.47487 -16.89139 -16.78579 -16.31616 -16.28296 -15.96458 -15.03890 -14.67526 -14.60500 -14.24398 -14.22082 -14.05152 -13.93393 -13.93259 -13.70232 -13.39479 -13.17985 -12.95742 -12.77655 -12.48599 -12.31532 -12.05005 -11.83232 -11.53991 -11.34075 -11.19136 -10.97146 -10.76710 -10.29708 -10.13534 -10.06509 -9.89646 -9.16335 -8.66124 -8.47698 -8.25442 -7.41831 -6.30753 -4.01022 0.81223 1.16397 2.48335 3.01780 3.35164 3.46459 3.47189 3.53520 3.66013 3.87290 4.27506 4.53063 4.58128 4.71887 4.87377 4.89340 4.95743 5.16752 5.21929 5.24230 5.29464 5.38802 5.50447 5.81352 5.93780 5.95637 6.03620 6.06703 6.11246 6.29032 6.39630 6.51912 6.64264 6.93452 6.99541 7.13097 7.19674 7.28618 7.83278 8.21253 8.37724 8.61703 8.91274 9.67261 11.05465 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003412 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.271524 B = 8204.322112 C = 9241.172805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.029 0.971 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.669 5.669 14 C 0.091 3.909 15 C -0.026 4.026 16 C -0.096 4.096 17 C 0.126 3.874 18 O -0.311 6.311 19 C 0.025 3.975 20 C -0.173 4.173 21 C -0.147 4.147 22 C 0.510 3.490 23 F -0.181 7.181 24 F -0.177 7.177 25 F -0.174 7.174 26 C -0.101 4.101 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.021 0.979 31 H 0.068 0.932 32 H 0.269 0.731 33 H 0.331 0.669 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.143 0.857 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.139 0.861 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 4.946 -20.340 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.096 3.904 4 H 0.047 0.953 5 C -0.609 4.609 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.300 5.300 14 C -0.039 4.039 15 C -0.027 4.027 16 C -0.115 4.115 17 C 0.081 3.919 18 O -0.224 6.224 19 C -0.070 4.070 20 C -0.192 4.192 21 C -0.148 4.148 22 C 0.456 3.544 23 F -0.162 7.162 24 F -0.158 7.158 25 F -0.155 7.155 26 C -0.120 4.120 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.157 0.843 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.637 5.702 -18.431 19.362 hybrid contribution -0.656 -1.126 -2.391 2.723 sum -2.293 4.576 -20.822 21.442 Atomic orbital electron populations 1.21598 0.96714 0.99202 1.01439 1.22278 0.96240 1.01354 0.99520 1.19385 0.95790 0.88429 0.86824 0.95345 1.21785 1.30094 1.18107 0.90964 0.92643 1.25701 0.95758 0.97060 0.99985 1.70821 1.24537 1.24451 1.35584 0.83567 0.75542 0.75613 0.75747 1.20992 1.21507 1.21541 1.60831 1.04872 1.62325 1.01973 1.20959 0.99036 0.95195 0.88673 1.19794 0.93837 0.93865 0.95172 1.20604 1.01723 0.93699 0.95440 1.18827 0.92933 0.85819 0.94329 1.86128 1.63801 1.29525 1.42950 1.23101 1.01180 0.97025 0.85722 1.20899 1.00188 0.96653 1.01499 1.19578 1.00601 0.97508 0.97123 1.18297 0.80598 0.75682 0.79856 1.93140 1.95856 1.67843 1.59358 1.93217 1.88569 1.45366 1.88637 1.93235 1.45841 1.95098 1.81370 1.20721 0.98222 1.00246 0.92833 0.95291 0.90805 0.94896 0.96002 0.91389 0.91948 0.85062 0.90127 0.94691 0.83907 0.92487 0.87991 0.92598 0.84300 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.38 37.16 0.35 -2.32 16 2 C -0.15 -3.36 5.45 -26.73 -0.15 -3.51 16 3 C 0.20 4.79 1.95 -68.86 -0.13 4.65 16 4 H 0.03 0.74 7.32 -51.93 -0.38 0.36 16 5 C -0.57 -15.18 7.18 -34.44 -0.25 -15.43 16 6 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 7 C 0.02 0.51 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -26.50 13.21 55.43 0.73 -25.77 16 9 Si 1.07 24.71 29.91 -169.99 -5.08 19.63 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.67 -13.41 6.18 -109.22 -0.67 -14.08 16 14 C 0.09 1.49 5.60 -4.98 -0.03 1.47 16 15 C -0.03 -0.38 5.43 -104.64 -0.57 -0.95 16 16 C -0.10 -1.34 9.64 -39.43 -0.38 -1.73 16 17 C 0.13 1.62 6.69 -39.22 -0.26 1.35 16 18 O -0.31 -3.66 10.50 -19.42 -0.20 -3.87 16 19 C 0.02 0.19 9.81 101.05 0.99 1.18 16 20 C -0.17 -2.04 8.42 -39.44 -0.33 -2.37 16 21 C -0.15 -1.84 5.37 -104.64 -0.56 -2.40 16 22 C 0.51 6.08 3.32 36.01 0.12 6.20 16 23 F -0.18 -2.02 15.97 2.25 0.04 -1.98 16 24 F -0.18 -2.14 17.23 2.25 0.04 -2.10 16 25 F -0.17 -2.22 17.24 2.25 0.04 -2.18 16 26 C -0.10 -1.36 9.25 -39.56 -0.37 -1.72 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.66 6.88 -51.93 -0.36 1.30 16 29 H 0.03 0.59 6.68 -51.93 -0.35 0.25 16 30 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 31 H 0.07 1.65 6.17 -51.93 -0.32 1.33 16 32 H 0.27 7.67 5.62 -40.82 -0.23 7.44 16 33 H 0.33 6.44 6.79 -39.29 -0.27 6.18 16 34 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 35 H 0.04 0.56 7.14 -51.93 -0.37 0.18 16 36 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 40 H 0.14 1.33 5.40 -52.49 -0.28 1.05 16 41 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -28.92 346.89 -6.58 -35.49 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.03 Total: 4.80 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.66 Total: -15.17 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.06 Total: -39.85 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.92 -6.58 -35.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529545764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.507 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds