Wall clock time and date at job start Tue Mar 31 2020 12:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38163 * 119.97722 * 89.99860 * 15 14 13 17 17 C 1.38715 * 119.94590 * 179.97438 * 16 15 14 18 18 O 1.35899 * 120.05335 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99850 * 180.02562 * 18 17 16 20 20 C 1.38748 * 119.89048 * 359.97438 * 17 16 15 21 21 C 1.38123 * 119.94205 * 0.02562 * 20 17 16 22 22 C 1.50706 * 119.97052 * 179.97438 * 21 20 17 23 23 F 1.39891 * 109.47255 * 359.97438 * 22 21 20 24 24 F 1.39902 * 109.47132 * 120.00452 * 22 21 20 25 25 F 1.39902 * 109.47075 * 239.99944 * 22 21 20 26 26 C 1.38256 * 119.97032 * 269.72159 * 15 14 13 27 27 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 28 28 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 29 29 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 30 30 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 31 31 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 32 32 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 33 33 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 34 34 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 35 35 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 36 36 H 1.08000 * 120.02916 * 359.95942 * 16 15 14 37 37 H 1.08999 * 109.47240 * 59.99682 * 19 18 17 38 38 H 1.08995 * 109.46986 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.46948 * 299.99385 * 19 18 17 40 40 H 1.07996 * 120.03206 * 179.97438 * 20 17 16 41 41 H 1.07992 * 119.94165 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7963 3.7423 -3.8154 17 6 2.4696 4.4644 -4.9538 18 8 3.0505 5.6712 -5.1843 19 6 2.6660 6.3592 -6.3764 20 6 1.5495 3.9522 -5.8573 21 6 0.9609 2.7252 -5.6209 22 6 -0.0390 2.1685 -6.6015 23 9 -0.2046 3.0680 -7.6600 24 9 0.4250 0.9451 -7.0966 25 9 -1.2660 1.9758 -5.9576 26 6 1.2917 2.0051 -4.4876 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3633 0.5896 0.8417 29 1 -0.3633 0.4342 -0.9314 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.0722 0.4283 1.9219 33 1 0.6931 1.8857 -1.4926 34 1 3.5861 1.9537 -2.0570 35 1 2.4645 0.6641 -2.5543 36 1 3.5123 4.1389 -3.1108 37 1 1.5930 6.5498 -6.3559 38 1 3.2018 7.3063 -6.4381 39 1 2.9097 5.7463 -7.2442 40 1 1.2932 4.5127 -6.7441 41 1 0.8341 1.0437 -4.3071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529545764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:42 Heat of formation + Delta-G solvation = -187.263575 kcal Electronic energy + Delta-G solvation = -26806.544054 eV Core-core repulsion = 22463.814141 eV Total energy + Delta-G solvation = -4342.729913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.25259 -48.76917 -48.70833 -41.39325 -39.25491 -38.22449 -35.09913 -33.41859 -32.30975 -31.13181 -28.59122 -28.02570 -27.01398 -25.85573 -25.31040 -23.26503 -22.24403 -21.37628 -19.74051 -19.56870 -19.45123 -18.72995 -17.75507 -17.35069 -17.26849 -16.76921 -16.53714 -15.95891 -15.61278 -15.55004 -15.47181 -15.23415 -15.15050 -14.91742 -14.86940 -14.74604 -14.61937 -14.28650 -13.86988 -13.75294 -13.53995 -13.36079 -13.09344 -12.88876 -12.67080 -12.58497 -12.17841 -12.12173 -11.98067 -11.88615 -11.87476 -11.65995 -10.65337 -10.34635 -10.20750 -9.44807 -9.04897 -8.46988 -6.17626 -0.21136 0.14394 1.52847 1.57862 1.64179 1.83127 2.20205 2.31527 2.58302 2.62836 2.92926 3.29055 3.32621 3.52663 3.74699 3.86832 3.92197 4.05548 4.16324 4.26700 4.36498 4.37417 4.37654 4.41656 4.54475 4.64694 4.68446 4.74889 4.93588 4.94945 5.00697 5.12626 5.23183 5.34404 5.41102 5.44932 5.57661 5.97054 6.24123 6.26465 6.55659 6.72206 6.81887 7.57831 8.89853 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003412 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.271524 B = 8204.322112 C = 9241.172805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.146 4.146 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.027 4.027 8 N -0.943 5.943 9 Si 1.107 2.893 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.272 1.272 13 N -0.675 5.675 14 C 0.096 3.904 15 C -0.035 4.035 16 C -0.110 4.110 17 C 0.127 3.873 18 O -0.327 6.327 19 C 0.013 3.987 20 C -0.164 4.164 21 C -0.149 4.149 22 C 0.516 3.484 23 F -0.174 7.174 24 F -0.177 7.177 25 F -0.179 7.179 26 C -0.105 4.105 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.335 0.665 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.164 0.836 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 5.698 -22.277 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.099 3.901 4 H 0.016 0.984 5 C -0.613 4.613 6 H 0.063 0.937 7 C -0.225 4.225 8 N -0.582 5.582 9 Si 0.931 3.069 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.197 1.197 13 N -0.306 5.306 14 C -0.033 4.033 15 C -0.036 4.036 16 C -0.130 4.130 17 C 0.081 3.919 18 O -0.241 6.241 19 C -0.081 4.081 20 C -0.182 4.182 21 C -0.150 4.150 22 C 0.462 3.538 23 F -0.155 7.155 24 F -0.158 7.158 25 F -0.160 7.160 26 C -0.124 4.124 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.181 0.819 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.837 6.465 -20.407 21.594 hybrid contribution -0.248 -1.275 -1.938 2.333 sum -3.085 5.190 -22.344 23.146 Atomic orbital electron populations 1.21508 0.95163 1.00211 1.01375 1.22127 0.97517 0.99839 0.99102 1.19145 0.93720 0.89489 0.87773 0.98369 1.22045 1.29339 1.17658 0.92220 0.93747 1.26888 0.95753 0.97091 1.02774 1.70916 1.26109 1.25857 1.35300 0.83039 0.75573 0.75339 0.72988 1.21449 1.20349 1.19738 1.60659 1.05682 1.62338 1.01939 1.20881 0.97788 0.96142 0.88445 1.19512 0.95150 0.94136 0.94788 1.20625 1.02051 0.94025 0.96261 1.18811 0.92908 0.86225 0.93926 1.86119 1.63962 1.29062 1.44939 1.23456 1.02220 0.97786 0.84624 1.21148 0.99001 0.96279 1.01799 1.19668 1.00671 0.97708 0.96953 1.18130 0.80182 0.75685 0.79789 1.93154 1.95794 1.67585 1.58975 1.93220 1.88557 1.45441 1.88611 1.93229 1.46101 1.95130 1.81525 1.20770 0.97953 1.00713 0.92948 0.93261 0.93407 0.92810 0.93842 0.94270 0.92921 0.84560 0.91027 0.93737 0.84750 0.91557 0.85892 0.91165 0.81851 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.38 71.98 0.68 -4.24 16 2 C -0.15 -6.37 5.45 30.59 0.17 -6.20 16 3 C 0.21 9.93 1.95 44.17 0.09 10.02 16 4 H 0.00 -0.08 7.32 -2.39 -0.02 -0.10 16 5 C -0.57 -31.00 7.18 25.60 0.18 -30.81 16 6 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 7 C -0.03 -1.50 5.29 84.65 0.45 -1.05 16 8 N -0.94 -55.85 13.21 21.44 0.28 -55.56 16 9 Si 1.11 49.96 29.91 68.60 2.05 52.01 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.68 -27.06 6.18 -499.47 -3.09 -30.15 16 14 C 0.10 3.17 5.60 85.56 0.48 3.65 16 15 C -0.04 -1.00 5.43 -19.88 -0.11 -1.11 16 16 C -0.11 -3.07 9.64 22.37 0.22 -2.86 16 17 C 0.13 3.06 6.69 22.51 0.15 3.21 16 18 O -0.33 -7.16 10.50 -92.41 -0.97 -8.13 16 19 C 0.01 0.16 9.81 113.37 1.11 1.27 16 20 C -0.16 -3.44 8.42 22.36 0.19 -3.25 16 21 C -0.15 -3.40 5.37 -19.88 -0.11 -3.51 16 22 C 0.52 11.05 3.32 71.24 0.24 11.29 16 23 F -0.17 -3.38 15.97 44.97 0.72 -2.66 16 24 F -0.18 -3.89 17.23 44.97 0.78 -3.12 16 25 F -0.18 -4.15 17.24 44.97 0.78 -3.38 16 26 C -0.10 -2.65 9.25 22.29 0.21 -2.45 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 2.12 6.88 -2.39 -0.02 2.10 16 29 H 0.05 1.86 6.68 -2.39 -0.02 1.84 16 30 H 0.04 1.68 7.13 -2.39 -0.02 1.66 16 31 H 0.04 1.93 6.17 -2.39 -0.01 1.91 16 32 H 0.26 15.40 5.62 -92.71 -0.52 14.88 16 33 H 0.34 12.79 6.79 -89.69 -0.61 12.18 16 34 H 0.07 2.45 7.89 -2.39 -0.02 2.43 16 35 H 0.04 1.38 7.14 -2.39 -0.02 1.36 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 38 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 40 H 0.16 2.56 5.40 -2.91 -0.02 2.55 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -62.39 346.89 5.19 -57.19 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.71 Total: 19.84 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 3.93 Total: -26.04 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.80 Total: -85.72 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.97 Total: -8.13 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 2.27 Total: -9.16 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.01 kcal Total: -62.39 5.19 -57.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529545764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.071 kcal (2) G-P(sol) polarization free energy of solvation -62.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds