Wall clock time and date at job start Tue Mar 31 2020 12:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47366 * 185.17928 * 3 2 1 5 5 C 1.50709 * 109.46890 * 305.17632 * 3 2 1 6 6 H 1.07996 * 120.00414 * 119.99986 * 5 3 2 7 7 C 1.37880 * 119.99462 * 300.00217 * 5 3 2 8 8 N 1.31513 * 119.99522 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46961 * 90.00608 * 9 7 5 11 11 H 1.48505 * 109.47098 * 209.99939 * 9 7 5 12 12 H 1.48494 * 109.47435 * 329.99922 * 9 7 5 13 13 N 1.46903 * 109.47353 * 65.17056 * 3 2 1 14 14 C 1.46903 * 110.99330 * 85.90800 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.80951 * 14 13 3 16 16 C 1.38155 * 119.97605 * 89.99758 * 15 14 13 17 17 C 1.38713 * 119.94506 * 179.97438 * 16 15 14 18 18 O 1.35901 * 120.05369 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99667 * 180.02562 * 18 17 16 20 20 C 1.38747 * 119.89085 * 0.02562 * 17 16 15 21 21 C 1.38122 * 119.94371 * 359.97438 * 20 17 16 22 22 C 1.50698 * 119.97646 * 179.97438 * 21 20 17 23 23 F 1.39906 * 109.46815 * 0.02562 * 22 21 20 24 24 F 1.39894 * 109.47336 * 119.99590 * 22 21 20 25 25 F 1.39898 * 109.47029 * 240.00182 * 22 21 20 26 26 C 1.38254 * 119.96881 * 269.71859 * 15 14 13 27 27 H 1.09001 * 109.47141 * 54.86044 * 1 2 3 28 28 H 1.09001 * 109.47539 * 294.86009 * 1 2 3 29 29 H 1.09002 * 109.47365 * 174.85792 * 1 2 3 30 30 H 1.09002 * 109.46937 * 119.99479 * 2 1 3 31 31 H 1.08998 * 109.47536 * 239.99058 * 2 1 3 32 32 H 0.97000 * 119.99835 * 180.02562 * 8 7 5 33 33 H 1.00893 * 110.99853 * 321.95100 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.80116 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.80803 * 14 13 3 36 36 H 1.08005 * 120.03061 * 359.95512 * 16 15 14 37 37 H 1.09003 * 109.46850 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47021 * 299.99181 * 19 18 17 39 39 H 1.08996 * 109.47545 * 59.99971 * 19 18 17 40 40 H 1.08001 * 120.03008 * 179.97438 * 20 17 16 41 41 H 1.07996 * 119.94123 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0928 5 6 1.4357 2.1889 -1.1614 6 1 0.8266 3.0628 -0.9836 7 6 1.6605 1.7560 -2.4511 8 7 1.1335 2.4076 -3.4646 9 14 2.7145 0.2448 -2.7587 10 1 1.8541 -0.9655 -2.7671 11 1 3.3969 0.3760 -4.0711 12 1 3.7305 0.1225 -1.6826 13 7 1.6549 2.0980 1.2570 14 6 2.6438 1.8366 2.3114 15 6 2.2842 2.6255 3.5440 16 6 1.4577 2.0705 4.5020 17 6 1.1275 2.7970 5.6366 18 8 0.3152 2.2530 6.5805 19 6 0.0171 3.0589 7.7224 20 6 1.6279 4.0799 5.8061 21 6 2.4538 4.6303 4.8455 22 6 2.9973 6.0239 5.0286 23 9 2.5298 6.5517 6.2370 24 9 4.3954 5.9803 5.0493 25 9 2.5715 6.8333 3.9700 26 6 2.7862 3.9019 3.7180 27 1 -0.3633 0.5915 -0.8404 28 1 -0.3634 0.4320 0.9324 29 1 -0.3634 -1.0235 -0.0921 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5140 -0.8899 32 1 1.2913 2.1029 -4.3719 33 1 0.7324 1.8103 1.5470 34 1 2.6486 0.7730 2.5493 35 1 3.6328 2.1358 1.9643 36 1 1.0688 1.0719 4.3675 37 1 -0.6385 2.5067 8.3957 38 1 0.9421 3.3098 8.2415 39 1 -0.4792 3.9746 7.4013 40 1 1.3720 4.6477 6.6884 41 1 3.4354 4.3324 2.9700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529545767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:46 Heat of formation + Delta-G solvation = -158.721164 kcal Electronic energy + Delta-G solvation = -26795.382524 eV Core-core repulsion = 22453.890303 eV Total energy + Delta-G solvation = -4341.492221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.23806 -47.78097 -47.66377 -40.44637 -38.14922 -36.72099 -33.47076 -31.93883 -31.25148 -29.91541 -27.85636 -27.01767 -26.02251 -24.61128 -23.22001 -22.29022 -21.14766 -19.60111 -18.68913 -18.54301 -18.46477 -16.86574 -16.48541 -16.31753 -16.23116 -15.99674 -15.19844 -14.95225 -14.58985 -14.51461 -14.14027 -14.01596 -13.92758 -13.84685 -13.82660 -13.37120 -13.23738 -12.90771 -12.78250 -12.61669 -12.35294 -12.18902 -12.11498 -11.63299 -11.35022 -11.26961 -11.00615 -10.76835 -10.56461 -10.45005 -9.91092 -9.46382 -9.18141 -9.13822 -8.54992 -8.45330 -7.50340 -6.04952 -4.01187 0.79748 1.18837 2.55059 2.98617 3.25055 3.33546 3.34480 3.37469 3.59801 3.93791 4.34895 4.39649 4.57061 4.70175 4.86992 4.88458 4.98277 5.09108 5.17360 5.21236 5.24976 5.33583 5.40806 5.75947 5.85827 5.90784 5.95037 5.99782 6.02717 6.15358 6.43680 6.44881 6.51123 6.74095 6.77348 6.94876 7.09512 7.25881 7.67917 7.84042 8.23445 8.67391 9.07043 9.57363 11.08357 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.003551 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.287201 B = 7884.149372 C = 9064.722389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.665 5.665 14 C 0.090 3.910 15 C -0.027 4.027 16 C -0.115 4.115 17 C 0.125 3.875 18 O -0.313 6.313 19 C 0.025 3.975 20 C -0.172 4.172 21 C -0.146 4.146 22 C 0.510 3.490 23 F -0.182 7.182 24 F -0.176 7.176 25 F -0.171 7.171 26 C -0.081 4.081 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.335 0.665 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 1.530 22.239 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.198 4.198 3 C 0.077 3.923 4 H 0.053 0.947 5 C -0.529 4.529 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.195 1.195 13 N -0.296 5.296 14 C -0.039 4.039 15 C -0.028 4.028 16 C -0.134 4.134 17 C 0.080 3.920 18 O -0.226 6.226 19 C -0.070 4.070 20 C -0.191 4.191 21 C -0.148 4.148 22 C 0.456 3.544 23 F -0.163 7.163 24 F -0.158 7.158 25 F -0.152 7.152 26 C -0.100 4.100 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.157 0.843 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.656 2.003 21.863 22.016 hybrid contribution 0.445 -1.318 0.111 1.396 sum 2.101 0.685 21.973 22.084 Atomic orbital electron populations 1.21655 0.95720 0.99666 1.02525 1.22507 0.97343 1.00968 0.99014 1.19746 0.96122 0.88264 0.88180 0.94736 1.20873 1.31287 1.12775 0.87988 0.89961 1.24889 0.95521 0.96580 0.96155 1.69877 1.44946 1.40162 0.98829 0.86979 0.81143 0.83889 0.76904 1.20650 1.22448 1.19535 1.60689 1.03809 1.62799 1.02322 1.20989 0.98235 0.95703 0.88971 1.19760 0.94276 0.93813 0.94922 1.20576 0.99732 1.01073 0.92014 1.18752 0.91865 0.91454 0.89927 1.86104 1.63239 1.42984 1.30305 1.23099 1.01101 0.96307 0.86514 1.20905 1.01474 0.95850 1.00912 1.19655 1.03341 0.93013 0.98777 1.18279 0.75739 0.86710 0.73721 1.93140 1.88520 1.88282 1.46380 1.93215 1.29611 1.96792 1.96151 1.93254 1.89651 1.75450 1.56889 1.20756 0.99852 0.93870 0.95490 0.89965 0.94073 0.95060 0.94846 0.93217 0.92701 0.84627 0.94637 0.89905 0.84478 0.88041 0.92571 0.92418 0.84306 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.40 37.16 0.35 -2.31 16 2 C -0.16 -3.24 5.22 -26.73 -0.14 -3.38 16 3 C 0.19 4.12 1.93 -68.86 -0.13 3.98 16 4 H 0.03 0.80 6.76 -51.93 -0.35 0.45 16 5 C -0.49 -13.18 7.83 -34.43 -0.27 -13.45 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.85 16 8 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 9 Si 0.88 21.33 24.32 -169.99 -4.13 17.19 16 10 H -0.28 -6.63 6.92 56.52 0.39 -6.24 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.24 6.53 56.52 0.37 -5.88 16 13 N -0.67 -12.65 6.19 -109.22 -0.68 -13.32 16 14 C 0.09 1.39 5.64 -4.97 -0.03 1.36 16 15 C -0.03 -0.37 5.43 -104.64 -0.57 -0.94 16 16 C -0.11 -1.45 9.64 -39.44 -0.38 -1.84 16 17 C 0.13 1.50 6.69 -39.22 -0.26 1.24 16 18 O -0.31 -3.41 10.50 -19.43 -0.20 -3.61 16 19 C 0.02 0.17 9.81 101.05 0.99 1.16 16 20 C -0.17 -1.98 8.42 -39.44 -0.33 -2.31 16 21 C -0.15 -1.85 5.37 -104.65 -0.56 -2.41 16 22 C 0.51 6.27 3.32 36.00 0.12 6.39 16 23 F -0.18 -2.07 15.97 2.25 0.04 -2.04 16 24 F -0.18 -2.20 17.23 2.25 0.04 -2.16 16 25 F -0.17 -2.33 17.24 2.25 0.04 -2.30 16 26 C -0.08 -1.10 9.25 -39.56 -0.37 -1.47 16 27 H 0.08 1.83 6.85 -51.93 -0.36 1.48 16 28 H 0.04 0.70 6.63 -51.93 -0.34 0.36 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 31 H 0.05 1.09 3.42 -51.93 -0.18 0.91 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.33 6.09 6.69 -39.30 -0.26 5.83 16 34 H 0.04 0.51 7.48 -51.93 -0.39 0.12 16 35 H 0.08 1.27 7.87 -51.93 -0.41 0.86 16 36 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 39 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.14 1.30 5.40 -52.49 -0.28 1.02 16 41 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -29.59 342.02 -5.70 -35.29 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.05 Total: 4.06 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.68 Total: -12.12 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.10 Total: -39.47 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.61 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.13 Total: 17.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.59 -5.70 -35.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529545767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.429 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds