Wall clock time and date at job start Tue Mar 31 2020 12:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47366 * 185.17928 * 3 2 1 5 5 C 1.50709 * 109.46890 * 305.17632 * 3 2 1 6 6 H 1.07996 * 120.00414 * 119.99986 * 5 3 2 7 7 C 1.37880 * 119.99462 * 300.00217 * 5 3 2 8 8 N 1.31513 * 119.99522 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46961 * 90.00608 * 9 7 5 11 11 H 1.48505 * 109.47098 * 209.99939 * 9 7 5 12 12 H 1.48494 * 109.47435 * 329.99922 * 9 7 5 13 13 N 1.46903 * 109.47353 * 65.17056 * 3 2 1 14 14 C 1.46903 * 110.99330 * 85.90800 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.80951 * 14 13 3 16 16 C 1.38155 * 119.97605 * 89.99758 * 15 14 13 17 17 C 1.38713 * 119.94506 * 179.97438 * 16 15 14 18 18 O 1.35901 * 120.05369 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99667 * 180.02562 * 18 17 16 20 20 C 1.38747 * 119.89085 * 0.02562 * 17 16 15 21 21 C 1.38122 * 119.94371 * 359.97438 * 20 17 16 22 22 C 1.50698 * 119.97646 * 179.97438 * 21 20 17 23 23 F 1.39906 * 109.46815 * 0.02562 * 22 21 20 24 24 F 1.39894 * 109.47336 * 119.99590 * 22 21 20 25 25 F 1.39898 * 109.47029 * 240.00182 * 22 21 20 26 26 C 1.38254 * 119.96881 * 269.71859 * 15 14 13 27 27 H 1.09001 * 109.47141 * 54.86044 * 1 2 3 28 28 H 1.09001 * 109.47539 * 294.86009 * 1 2 3 29 29 H 1.09002 * 109.47365 * 174.85792 * 1 2 3 30 30 H 1.09002 * 109.46937 * 119.99479 * 2 1 3 31 31 H 1.08998 * 109.47536 * 239.99058 * 2 1 3 32 32 H 0.97000 * 119.99835 * 180.02562 * 8 7 5 33 33 H 1.00893 * 110.99853 * 321.95100 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.80116 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.80803 * 14 13 3 36 36 H 1.08005 * 120.03061 * 359.95512 * 16 15 14 37 37 H 1.09003 * 109.46850 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47021 * 299.99181 * 19 18 17 39 39 H 1.08996 * 109.47545 * 59.99971 * 19 18 17 40 40 H 1.08001 * 120.03008 * 179.97438 * 20 17 16 41 41 H 1.07996 * 119.94123 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0928 5 6 1.4357 2.1889 -1.1614 6 1 0.8266 3.0628 -0.9836 7 6 1.6605 1.7560 -2.4511 8 7 1.1335 2.4076 -3.4646 9 14 2.7145 0.2448 -2.7587 10 1 1.8541 -0.9655 -2.7671 11 1 3.3969 0.3760 -4.0711 12 1 3.7305 0.1225 -1.6826 13 7 1.6549 2.0980 1.2570 14 6 2.6438 1.8366 2.3114 15 6 2.2842 2.6255 3.5440 16 6 1.4577 2.0705 4.5020 17 6 1.1275 2.7970 5.6366 18 8 0.3152 2.2530 6.5805 19 6 0.0171 3.0589 7.7224 20 6 1.6279 4.0799 5.8061 21 6 2.4538 4.6303 4.8455 22 6 2.9973 6.0239 5.0286 23 9 2.5298 6.5517 6.2370 24 9 4.3954 5.9803 5.0493 25 9 2.5715 6.8333 3.9700 26 6 2.7862 3.9019 3.7180 27 1 -0.3633 0.5915 -0.8404 28 1 -0.3634 0.4320 0.9324 29 1 -0.3634 -1.0235 -0.0921 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5140 -0.8899 32 1 1.2913 2.1029 -4.3719 33 1 0.7324 1.8103 1.5470 34 1 2.6486 0.7730 2.5493 35 1 3.6328 2.1358 1.9643 36 1 1.0688 1.0719 4.3675 37 1 -0.6385 2.5067 8.3957 38 1 0.9421 3.3098 8.2415 39 1 -0.4792 3.9746 7.4013 40 1 1.3720 4.6477 6.6884 41 1 3.4354 4.3324 2.9700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529545767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:46 Heat of formation + Delta-G solvation = -177.524352 kcal Electronic energy + Delta-G solvation = -26796.197891 eV Core-core repulsion = 22453.890303 eV Total energy + Delta-G solvation = -4342.307589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.22866 -48.74652 -48.68750 -41.34531 -39.18648 -38.15578 -34.91626 -33.70272 -32.40312 -31.11109 -28.85124 -28.45080 -26.97992 -25.95556 -24.96256 -23.22714 -22.18845 -21.33073 -19.65567 -19.54334 -19.46347 -18.39706 -17.72198 -17.29398 -17.21503 -17.00357 -16.70922 -16.37066 -15.60221 -15.51932 -15.46568 -15.12981 -15.02920 -14.90068 -14.85043 -14.80346 -14.59126 -14.34830 -14.21665 -13.71890 -13.59008 -13.34480 -13.07182 -12.86029 -12.72384 -12.47551 -12.32701 -12.16561 -12.11021 -11.97526 -11.64294 -11.24076 -11.08976 -10.65405 -10.18880 -9.37605 -8.99862 -8.20410 -6.20034 -0.17283 0.21169 1.33040 1.37889 1.46910 1.56805 2.23258 2.35916 2.36886 2.62353 2.96396 3.14744 3.35133 3.56633 3.76922 3.88955 4.00177 4.14673 4.20892 4.29525 4.32994 4.38223 4.39764 4.43573 4.52494 4.68033 4.75488 4.79777 4.94200 5.00347 5.05341 5.09155 5.19420 5.31932 5.43378 5.46905 5.62102 5.76391 6.05406 6.28761 6.71844 6.75761 6.86070 7.43030 8.97028 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.003551 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.287201 B = 7884.149372 C = 9064.722389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.030 0.970 5 C -0.485 4.485 6 H 0.034 0.966 7 C 0.013 3.987 8 N -0.952 5.952 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.304 1.304 12 H -0.248 1.248 13 N -0.679 5.679 14 C 0.095 3.905 15 C -0.036 4.036 16 C -0.116 4.116 17 C 0.126 3.874 18 O -0.324 6.324 19 C 0.013 3.987 20 C -0.166 4.166 21 C -0.152 4.152 22 C 0.513 3.487 23 F -0.174 7.174 24 F -0.178 7.178 25 F -0.181 7.181 26 C -0.096 4.096 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.339 0.661 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.161 0.839 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -0.227 25.044 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.081 3.919 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.052 0.948 7 C -0.184 4.184 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.233 1.233 12 H -0.172 1.172 13 N -0.311 5.311 14 C -0.034 4.034 15 C -0.037 4.037 16 C -0.136 4.136 17 C 0.080 3.920 18 O -0.237 6.237 19 C -0.081 4.081 20 C -0.185 4.185 21 C -0.153 4.153 22 C 0.459 3.541 23 F -0.155 7.155 24 F -0.159 7.159 25 F -0.163 7.163 26 C -0.115 4.115 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.178 0.822 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.989 0.244 24.719 24.800 hybrid contribution 0.254 -0.653 -0.595 0.919 sum 2.243 -0.409 24.124 24.232 Atomic orbital electron populations 1.21580 0.95175 1.00551 1.01856 1.22426 0.97857 0.99241 1.00062 1.19498 0.95248 0.89231 0.87933 0.95189 1.21104 1.29835 1.11372 0.90034 0.94762 1.25676 0.97019 0.99778 0.95881 1.70046 1.47448 1.42572 0.99327 0.85964 0.79905 0.80319 0.76819 1.19375 1.23267 1.17194 1.60478 1.04962 1.63110 1.02513 1.20963 0.96900 0.97162 0.88381 1.19569 0.95452 0.93823 0.94844 1.20696 0.99214 1.01665 0.91976 1.18801 0.91709 0.91381 0.90061 1.86101 1.62679 1.43948 1.30988 1.23436 1.02299 0.96720 0.85622 1.21143 1.00358 0.95864 1.01113 1.19690 1.03768 0.93008 0.98870 1.18228 0.75646 0.86537 0.73677 1.93150 1.88413 1.88184 1.45801 1.93211 1.29754 1.96785 1.96155 1.93234 1.89770 1.75759 1.57518 1.20778 1.00451 0.94277 0.95996 0.93979 0.92105 0.92692 0.91238 0.94457 0.92882 0.84149 0.92626 0.90286 0.83280 0.85792 0.91364 0.91781 0.82158 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.40 71.98 0.68 -4.24 16 2 C -0.16 -5.97 5.22 30.59 0.16 -5.81 16 3 C 0.19 8.27 1.93 44.17 0.09 8.36 16 4 H 0.03 1.35 6.76 -2.39 -0.02 1.33 16 5 C -0.48 -26.76 7.83 25.60 0.20 -26.56 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 7 C 0.01 0.73 5.42 84.66 0.46 1.19 16 8 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 9 Si 0.94 43.99 24.32 68.60 1.67 45.65 16 10 H -0.27 -11.90 6.92 99.48 0.69 -11.21 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.25 -10.58 6.53 99.48 0.65 -9.93 16 13 N -0.68 -25.25 6.19 -499.45 -3.09 -28.34 16 14 C 0.09 2.74 5.64 85.56 0.48 3.22 16 15 C -0.04 -0.95 5.43 -19.88 -0.11 -1.06 16 16 C -0.12 -2.69 9.64 22.36 0.22 -2.48 16 17 C 0.13 2.72 6.69 22.51 0.15 2.87 16 18 O -0.32 -6.12 10.50 -92.44 -0.97 -7.09 16 19 C 0.01 0.14 9.81 113.37 1.11 1.25 16 20 C -0.17 -3.43 8.42 22.36 0.19 -3.24 16 21 C -0.15 -3.65 5.37 -19.88 -0.11 -3.76 16 22 C 0.51 12.12 3.32 71.24 0.24 12.35 16 23 F -0.17 -3.66 15.97 44.97 0.72 -2.94 16 24 F -0.18 -4.28 17.23 44.97 0.77 -3.51 16 25 F -0.18 -4.89 17.24 44.97 0.78 -4.12 16 26 C -0.10 -2.57 9.25 22.29 0.21 -2.36 16 27 H 0.04 1.87 6.85 -2.39 -0.02 1.85 16 28 H 0.06 1.95 6.63 -2.39 -0.02 1.93 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.17 7.50 -2.39 -0.02 2.15 16 31 H 0.04 1.52 3.42 -2.39 -0.01 1.51 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.34 11.92 6.69 -89.70 -0.60 11.32 16 34 H 0.06 1.40 7.48 -2.39 -0.02 1.38 16 35 H 0.08 2.33 7.87 -2.39 -0.02 2.31 16 36 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 39 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 40 H 0.16 2.53 5.40 -2.91 -0.02 2.51 16 41 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -65.76 342.02 4.53 -61.23 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.40 Total: 18.36 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.96 Total: -20.25 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.79 Total: -87.33 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.97 Total: -7.09 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 2.27 Total: -10.56 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.65 kcal Total: -65.76 4.53 -61.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529545767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.294 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds