Wall clock time and date at job start Tue Mar 31 2020 11:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00164 * 2 1 4 4 O 1.20831 * 119.99952 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00077 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46989 * 84.99980 * 5 3 2 7 7 N 1.46503 * 109.46780 * 325.00155 * 5 3 2 8 8 C 1.34778 * 119.99639 * 179.97438 * 7 5 3 9 9 O 1.21582 * 120.00054 * 0.02562 * 8 7 5 10 10 C 1.47647 * 119.99725 * 180.02562 * 8 7 5 11 11 C 1.40010 * 119.89595 * 359.72308 * 10 8 7 12 12 C 1.36323 * 120.10675 * 179.76338 * 11 10 8 13 13 C 1.40890 * 119.88780 * 0.51180 * 12 11 10 14 14 C 1.41104 * 120.10133 * 179.71799 * 13 12 11 15 15 H 1.08006 * 119.99890 * 204.64836 * 14 13 12 16 16 C 1.40224 * 119.99946 * 24.65274 * 14 13 12 17 17 N 1.30642 * 120.00290 * 17.87131 * 16 14 13 18 18 Si 1.86806 * 120.00000 * 197.87483 * 16 14 13 19 19 H 1.48504 * 109.46923 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47362 * 119.99848 * 18 16 14 21 21 H 1.48500 * 109.47069 * 239.99731 * 18 16 14 22 22 C 1.40887 * 119.79583 * 359.74373 * 13 12 11 23 23 C 1.36313 * 119.89319 * 359.97438 * 22 13 12 24 24 C 1.52995 * 109.47294 * 205.00353 * 5 3 2 25 25 C 1.53000 * 117.51730 * 236.28580 * 24 5 3 26 26 C 1.52994 * 59.99944 * 107.47887 * 25 24 5 27 27 H 1.08999 * 109.47204 * 59.99699 * 1 2 3 28 28 H 1.08997 * 109.47570 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47181 * 300.00069 * 1 2 3 30 30 H 1.08999 * 109.46890 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47188 * 300.00208 * 6 5 3 32 32 H 1.08996 * 109.47423 * 60.00171 * 6 5 3 33 33 H 0.96995 * 120.00476 * 0.02562 * 7 5 3 34 34 H 1.07999 * 119.94371 * 0.02562 * 11 10 8 35 35 H 1.07993 * 120.05498 * 180.23352 * 12 11 10 36 36 H 0.97001 * 120.00062 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.05820 * 179.97438 * 22 13 12 38 38 H 1.08001 * 119.94878 * 179.97438 * 23 22 13 39 39 H 1.09003 * 115.55325 * 90.58117 * 24 5 3 40 40 H 1.09009 * 117.49687 * 214.97436 * 25 24 5 41 41 H 1.08999 * 117.49866 * 359.97438 * 25 24 5 42 42 H 1.08999 * 117.49793 * 252.50508 * 26 25 24 43 43 H 1.09008 * 117.49756 * 107.49300 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0828 1.1756 -1.4362 7 7 4.1128 0.1705 0.7933 8 6 5.4466 0.0381 0.9346 9 8 6.1962 0.8353 0.4048 10 6 5.9974 -1.0750 1.7330 11 6 5.1320 -1.9884 2.3471 12 6 5.6360 -3.0206 3.0812 13 6 7.0299 -3.1611 3.2304 14 6 7.5563 -4.2243 3.9943 15 1 8.5344 -4.1342 4.4432 16 6 6.8094 -5.3980 4.1703 17 7 5.8103 -5.6626 3.3713 18 14 7.2431 -6.5833 5.5475 19 1 8.4071 -6.0574 6.3050 20 1 6.0813 -6.7270 6.4612 21 1 7.5860 -7.9081 4.9708 22 6 7.8966 -2.2363 2.6151 23 6 7.3834 -1.2108 1.8781 24 6 4.0071 2.6071 0.6102 25 6 4.9072 3.5087 -0.2370 26 6 3.4427 3.8878 -0.0080 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 5.1713 1.2322 -1.4357 31 1 3.7688 0.2265 -1.8704 32 1 3.6762 1.9971 -2.0260 33 1 3.5149 -0.4657 1.2157 34 1 4.0635 -1.8775 2.2354 35 1 4.9678 -3.7268 3.5514 36 1 5.2935 -6.4743 3.4933 37 1 8.9657 -2.3398 2.7270 38 1 8.0470 -0.5012 1.4064 39 1 4.1734 2.5991 1.6874 40 1 5.6658 4.0939 0.2829 41 1 5.1859 3.1526 -1.2288 42 1 2.7578 3.7812 -0.8492 43 1 3.2378 4.7224 0.6626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535412034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:42 Heat of formation + Delta-G solvation = -71.299571 kcal Electronic energy + Delta-G solvation = -26611.160028 eV Core-core repulsion = 22815.315432 eV Total energy + Delta-G solvation = -3795.844596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.12315 -39.28303 -37.85828 -36.93561 -36.16752 -34.09350 -33.88222 -30.93250 -29.51584 -29.38338 -27.97459 -26.09870 -25.15896 -22.45369 -22.17665 -21.92904 -20.96749 -19.96061 -18.93531 -18.02445 -17.52228 -17.21305 -16.51409 -16.17065 -15.85677 -15.45450 -14.81894 -14.44667 -14.09412 -13.93956 -13.61393 -13.43973 -13.18726 -13.08407 -12.74120 -12.37997 -12.20427 -12.07301 -12.00590 -11.88651 -11.49880 -11.39784 -11.29970 -11.26153 -10.94780 -10.94447 -10.67593 -10.59942 -10.17140 -10.05499 -9.92828 -9.57730 -9.36148 -8.86345 -8.73129 -7.73367 -7.56012 -7.05273 -4.61807 1.97801 2.21189 2.46877 2.89139 2.94202 2.99651 3.02874 3.54936 3.72718 3.82695 4.02208 4.49107 4.62214 4.76771 4.87841 4.95422 5.02085 5.14608 5.25881 5.35760 5.40933 5.55939 5.60690 5.79845 5.84990 5.96242 6.03743 6.08115 6.13685 6.28336 6.30402 6.33068 6.35510 6.74715 6.79055 6.81311 7.02257 7.11850 7.42186 7.57942 7.62777 7.77421 7.84989 8.05677 8.17685 8.38800 8.61825 8.73916 9.03374 9.86615 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.003271 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.175675 B = 8558.534033 C = 9664.298109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.466 3.534 4 O -0.491 6.491 5 C 0.229 3.771 6 C -0.166 4.166 7 N -0.732 5.732 8 C 0.578 3.422 9 O -0.559 6.559 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.442 4.442 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.770 5.770 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.239 4.239 23 C -0.020 4.020 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.162 4.162 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 7.533 -4.780 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.308 3.692 4 O -0.377 6.377 5 C 0.141 3.859 6 C -0.223 4.223 7 N -0.389 5.389 8 C 0.373 3.627 9 O -0.439 6.439 10 C -0.288 4.288 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.394 5.394 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.259 4.259 23 C -0.039 4.039 24 C -0.169 4.169 25 C -0.190 4.190 26 C -0.200 4.200 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.241 0.759 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.676 8.201 -5.220 13.030 hybrid contribution -0.568 -1.043 0.848 1.459 sum -9.244 7.158 -4.372 12.482 Atomic orbital electron populations 1.23303 0.76199 1.03941 1.02463 1.86550 1.23530 1.33288 1.83645 1.23825 0.91562 0.81614 0.72229 1.90653 1.66411 1.36059 1.44562 1.19382 0.83697 0.88556 0.94256 1.22377 1.05547 1.02208 0.92208 1.45997 1.08286 1.29760 1.54816 1.18530 0.80266 0.84667 0.79224 1.90610 1.58256 1.45001 1.50069 1.18851 0.94135 1.01743 1.14109 1.20493 0.96395 0.94568 0.96694 1.20971 0.95665 0.98872 1.04227 1.17792 0.91782 0.90530 0.87344 1.19888 1.03082 0.97893 1.26100 0.89678 1.26097 0.93682 0.99080 0.95821 1.69749 1.14876 1.23864 1.30872 0.86182 0.80019 0.79395 0.80825 1.18050 1.19383 1.19668 1.20710 0.98065 1.00638 1.06468 1.20345 0.93192 0.95469 0.94915 1.22246 1.06406 0.88934 0.99286 1.23024 0.93054 1.01570 1.01396 1.23007 0.96516 0.97099 1.03334 0.91929 0.87857 0.91792 0.87560 0.91629 0.91614 0.75928 0.89334 0.86238 0.90271 0.88420 0.88040 0.87408 0.88899 0.88072 0.88333 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.55 9.78 -39.24 -0.38 -4.94 16 3 C 0.47 6.61 6.73 36.01 0.24 6.86 16 4 O -0.49 -7.39 13.74 -18.75 -0.26 -7.65 16 5 C 0.23 3.43 0.87 -132.97 -0.12 3.31 16 6 C -0.17 -2.32 6.96 37.16 0.26 -2.06 16 7 N -0.73 -12.23 4.99 -49.68 -0.25 -12.48 16 8 C 0.58 11.54 7.18 -12.42 -0.09 11.45 16 9 O -0.56 -11.82 13.02 5.29 0.07 -11.75 16 10 C -0.28 -6.25 5.89 -104.72 -0.62 -6.87 16 11 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 12 C -0.18 -4.29 8.64 -39.27 -0.34 -4.63 16 13 C 0.13 3.22 5.58 -106.81 -0.60 2.63 16 14 C -0.44 -10.84 9.04 -37.75 -0.34 -11.18 16 15 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 16 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 17 N -0.77 -18.18 10.95 55.56 0.61 -17.58 16 18 Si 0.91 17.03 29.60 -169.99 -5.03 11.99 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.24 -5.66 9.73 -39.27 -0.38 -6.05 16 23 C -0.02 -0.46 9.52 -39.61 -0.38 -0.83 16 24 C -0.15 -2.22 4.15 -90.62 -0.38 -2.60 16 25 C -0.15 -2.07 8.90 -26.73 -0.24 -2.31 16 26 C -0.16 -2.08 8.53 -26.74 -0.23 -2.30 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.57 8.13 -51.92 -0.42 0.15 16 30 H 0.11 1.68 5.25 -51.93 -0.27 1.41 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 33 H 0.40 6.38 5.91 -40.82 -0.24 6.14 16 34 H 0.09 1.66 6.37 -52.49 -0.33 1.32 16 35 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 36 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.10 2.22 7.63 -52.49 -0.40 1.81 16 39 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 40 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.10 1.33 5.82 -51.93 -0.30 1.03 16 42 H 0.10 1.27 6.81 -51.93 -0.35 0.92 16 43 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -27.41 352.65 -8.06 -35.46 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -5.53 Total: 14.93 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.60 Total: -13.31 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.36 Total: -30.05 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.57 Total: -24.34 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.41 -8.06 -35.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535412034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.835 kcal (2) G-P(sol) polarization free energy of solvation -27.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds