Wall clock time and date at job start Tue Mar 31 2020 11:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00164 * 2 1 4 4 O 1.20831 * 119.99952 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00077 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46989 * 84.99980 * 5 3 2 7 7 N 1.46503 * 109.46780 * 325.00155 * 5 3 2 8 8 C 1.34778 * 119.99639 * 179.97438 * 7 5 3 9 9 O 1.21582 * 120.00054 * 0.02562 * 8 7 5 10 10 C 1.47647 * 119.99725 * 180.02562 * 8 7 5 11 11 C 1.40010 * 119.89595 * 359.72308 * 10 8 7 12 12 C 1.36323 * 120.10675 * 179.76338 * 11 10 8 13 13 C 1.40890 * 119.88780 * 0.51180 * 12 11 10 14 14 C 1.41104 * 120.10133 * 179.71799 * 13 12 11 15 15 H 1.08006 * 119.99890 * 204.64836 * 14 13 12 16 16 C 1.40224 * 119.99946 * 24.65274 * 14 13 12 17 17 N 1.30642 * 120.00290 * 17.87131 * 16 14 13 18 18 Si 1.86806 * 120.00000 * 197.87483 * 16 14 13 19 19 H 1.48504 * 109.46923 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47362 * 119.99848 * 18 16 14 21 21 H 1.48500 * 109.47069 * 239.99731 * 18 16 14 22 22 C 1.40887 * 119.79583 * 359.74373 * 13 12 11 23 23 C 1.36313 * 119.89319 * 359.97438 * 22 13 12 24 24 C 1.52995 * 109.47294 * 205.00353 * 5 3 2 25 25 C 1.53000 * 117.51730 * 236.28580 * 24 5 3 26 26 C 1.52994 * 59.99944 * 107.47887 * 25 24 5 27 27 H 1.08999 * 109.47204 * 59.99699 * 1 2 3 28 28 H 1.08997 * 109.47570 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47181 * 300.00069 * 1 2 3 30 30 H 1.08999 * 109.46890 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47188 * 300.00208 * 6 5 3 32 32 H 1.08996 * 109.47423 * 60.00171 * 6 5 3 33 33 H 0.96995 * 120.00476 * 0.02562 * 7 5 3 34 34 H 1.07999 * 119.94371 * 0.02562 * 11 10 8 35 35 H 1.07993 * 120.05498 * 180.23352 * 12 11 10 36 36 H 0.97001 * 120.00062 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.05820 * 179.97438 * 22 13 12 38 38 H 1.08001 * 119.94878 * 179.97438 * 23 22 13 39 39 H 1.09003 * 115.55325 * 90.58117 * 24 5 3 40 40 H 1.09009 * 117.49687 * 214.97436 * 25 24 5 41 41 H 1.08999 * 117.49866 * 359.97438 * 25 24 5 42 42 H 1.08999 * 117.49793 * 252.50508 * 26 25 24 43 43 H 1.09008 * 117.49756 * 107.49300 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0828 1.1756 -1.4362 7 7 4.1128 0.1705 0.7933 8 6 5.4466 0.0381 0.9346 9 8 6.1962 0.8353 0.4048 10 6 5.9974 -1.0750 1.7330 11 6 5.1320 -1.9884 2.3471 12 6 5.6360 -3.0206 3.0812 13 6 7.0299 -3.1611 3.2304 14 6 7.5563 -4.2243 3.9943 15 1 8.5344 -4.1342 4.4432 16 6 6.8094 -5.3980 4.1703 17 7 5.8103 -5.6626 3.3713 18 14 7.2431 -6.5833 5.5475 19 1 8.4071 -6.0574 6.3050 20 1 6.0813 -6.7270 6.4612 21 1 7.5860 -7.9081 4.9708 22 6 7.8966 -2.2363 2.6151 23 6 7.3834 -1.2108 1.8781 24 6 4.0071 2.6071 0.6102 25 6 4.9072 3.5087 -0.2370 26 6 3.4427 3.8878 -0.0080 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 5.1713 1.2322 -1.4357 31 1 3.7688 0.2265 -1.8704 32 1 3.6762 1.9971 -2.0260 33 1 3.5149 -0.4657 1.2157 34 1 4.0635 -1.8775 2.2354 35 1 4.9678 -3.7268 3.5514 36 1 5.2935 -6.4743 3.4933 37 1 8.9657 -2.3398 2.7270 38 1 8.0470 -0.5012 1.4064 39 1 4.1734 2.5991 1.6874 40 1 5.6658 4.0939 0.2829 41 1 5.1859 3.1526 -1.2288 42 1 2.7578 3.7812 -0.8492 43 1 3.2378 4.7224 0.6626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535412034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:41 Heat of formation + Delta-G solvation = -84.818717 kcal Electronic energy + Delta-G solvation = -26611.746262 eV Core-core repulsion = 22815.315432 eV Total energy + Delta-G solvation = -3796.430830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26783 -40.69691 -39.29526 -38.39116 -37.30334 -35.63876 -35.43836 -32.48488 -31.28073 -30.91517 -28.81243 -27.72305 -26.42132 -23.77071 -23.53222 -23.04514 -22.75899 -21.43434 -20.19068 -19.41487 -19.23451 -18.45808 -17.58821 -17.33511 -17.20584 -17.00759 -16.04170 -15.94393 -15.71818 -15.24338 -15.01437 -14.91006 -14.51879 -14.38315 -14.10950 -13.85515 -13.65729 -13.37754 -13.22174 -13.07223 -12.99014 -12.83705 -12.70794 -12.53786 -12.35448 -12.33419 -11.86985 -11.75446 -11.67445 -11.35489 -11.27638 -11.10819 -11.06931 -10.42420 -10.13461 -9.54369 -9.38459 -8.77578 -6.46029 0.47582 0.87249 1.18543 1.39610 1.43093 1.47268 1.55978 2.14825 2.18788 2.20610 2.80658 2.95347 3.46322 3.69783 3.73478 3.76484 4.04281 4.17888 4.20653 4.26294 4.32188 4.33765 4.42566 4.49302 4.55621 4.67639 4.70051 4.83250 4.95608 5.00074 5.02945 5.05447 5.17904 5.21960 5.24643 5.29289 5.32704 5.44020 5.61623 5.84491 5.96959 6.02493 6.25675 6.50868 6.56881 6.66790 6.79877 6.91641 7.46062 8.17706 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.003271 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.175675 B = 8558.534033 C = 9664.298109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.501 6.501 5 C 0.225 3.775 6 C -0.161 4.161 7 N -0.721 5.721 8 C 0.582 3.418 9 O -0.571 6.571 10 C -0.290 4.290 11 C -0.055 4.055 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.475 4.475 15 H 0.084 0.916 16 C 0.039 3.961 17 N -0.798 5.798 18 Si 0.986 3.014 19 H -0.258 1.258 20 H -0.261 1.261 21 H -0.264 1.264 22 C -0.254 4.254 23 C -0.028 4.028 24 C -0.171 4.171 25 C -0.153 4.153 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.409 0.591 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.296 0.704 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 7.576 -4.987 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.313 3.687 4 O -0.387 6.387 5 C 0.137 3.863 6 C -0.219 4.219 7 N -0.376 5.376 8 C 0.375 3.625 9 O -0.452 6.452 10 C -0.294 4.294 11 C -0.074 4.074 12 C -0.217 4.217 13 C 0.099 3.901 14 C -0.502 4.502 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.422 5.422 18 Si 0.806 3.194 19 H -0.181 1.181 20 H -0.185 1.185 21 H -0.189 1.189 22 C -0.273 4.273 23 C -0.047 4.047 24 C -0.191 4.191 25 C -0.190 4.190 26 C -0.179 4.179 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.151 8.252 -5.444 14.169 hybrid contribution -0.202 -0.984 0.832 1.305 sum -10.352 7.268 -4.612 13.464 Atomic orbital electron populations 1.23635 0.74060 1.05917 1.02979 1.86528 1.25612 1.32414 1.83209 1.23528 0.91069 0.81936 0.72123 1.90646 1.66452 1.36445 1.45199 1.19516 0.84594 0.87756 0.94398 1.22324 1.04352 1.03338 0.91895 1.45819 1.07159 1.30215 1.54390 1.18201 0.81309 0.83975 0.78971 1.90605 1.58965 1.45223 1.50453 1.19163 0.94068 1.02318 1.13876 1.20725 0.97949 0.93423 0.95336 1.20990 0.95363 0.99811 1.05566 1.18129 0.92582 0.91316 0.88110 1.20130 1.03799 0.98955 1.27361 0.89793 1.26891 0.93273 1.00157 0.97679 1.69766 1.15565 1.24864 1.31964 0.85097 0.79779 0.77028 0.77544 1.18110 1.18508 1.18865 1.20854 0.98422 1.01051 1.06976 1.20500 0.93989 0.95400 0.94849 1.22242 1.08346 0.89803 0.98676 1.23065 0.93605 1.01105 1.01224 1.23011 0.95871 0.95997 1.02997 0.91171 0.85245 0.91563 0.89353 0.91235 0.89539 0.75381 0.86383 0.87054 0.89241 0.87883 0.87430 0.88966 0.88803 0.87784 0.88003 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.50 9.78 -51.37 -0.50 -9.00 16 3 C 0.47 12.47 6.73 71.24 0.48 12.95 16 4 O -0.50 -14.00 13.74 21.95 0.30 -13.70 16 5 C 0.22 6.40 0.87 2.85 0.00 6.40 16 6 C -0.16 -4.26 6.96 71.98 0.50 -3.76 16 7 N -0.72 -23.23 4.99 -429.35 -2.14 -25.37 16 8 C 0.58 22.88 7.18 86.73 0.62 23.50 16 9 O -0.57 -23.90 13.02 -3.98 -0.05 -23.96 16 10 C -0.29 -12.74 5.89 -19.93 -0.12 -12.86 16 11 C -0.06 -2.40 9.47 22.25 0.21 -2.19 16 12 C -0.20 -9.69 8.64 22.47 0.19 -9.49 16 13 C 0.10 5.23 5.58 -21.28 -0.12 5.11 16 14 C -0.48 -23.85 9.04 23.46 0.21 -23.64 16 15 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 16 C 0.04 1.80 5.14 85.35 0.44 2.23 16 17 N -0.80 -37.84 10.95 21.87 0.24 -37.61 16 18 Si 0.99 34.58 29.60 68.60 2.03 36.61 16 19 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 20 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.25 -12.33 9.73 22.47 0.22 -12.11 16 23 C -0.03 -1.31 9.52 22.25 0.21 -1.09 16 24 C -0.17 -4.90 4.15 -10.80 -0.04 -4.95 16 25 C -0.15 -3.93 8.90 30.59 0.27 -3.66 16 26 C -0.14 -3.35 8.53 30.59 0.26 -3.09 16 27 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 30 H 0.09 2.70 5.25 -2.39 -0.01 2.69 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.90 7.18 -2.39 -0.02 1.88 16 33 H 0.41 12.28 5.91 -92.71 -0.55 11.73 16 34 H 0.12 4.27 6.37 -2.91 -0.02 4.26 16 35 H 0.11 5.56 6.16 -2.91 -0.02 5.54 16 36 H 0.30 12.44 8.29 -92.71 -0.77 11.67 16 37 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.11 4.75 7.63 -2.91 -0.02 4.73 16 39 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.10 2.60 5.82 -2.39 -0.01 2.59 16 42 H 0.10 2.37 6.81 -2.39 -0.02 2.36 16 43 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -58.73 352.65 4.92 -53.81 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: 0.50 Total: 44.23 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.54 Total: -25.01 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -1.90 Total: -62.97 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.25 Total: -46.66 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Total: -58.73 4.92 -53.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535412034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.012 kcal (2) G-P(sol) polarization free energy of solvation -58.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds