Wall clock time and date at job start Tue Mar 31 2020 11:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31889 * 122.59293 * 2 1 4 4 S 1.75351 * 111.38412 * 180.02562 * 3 2 1 5 5 C 1.75746 * 92.18635 * 0.02562 * 4 3 2 6 6 N 1.33922 * 131.28157 * 180.02562 * 5 4 3 7 7 C 1.31261 * 121.04546 * 179.97438 * 6 5 4 8 8 C 1.50699 * 118.91214 * 179.97438 * 7 6 5 9 9 N 1.32110 * 122.18279 * 359.75345 * 7 6 5 10 10 C 1.32458 * 121.18453 * 0.52193 * 9 7 6 11 11 N 1.38319 * 120.53178 * 179.75016 * 10 9 7 12 12 C 1.46842 * 111.00175 * 63.02869 * 11 10 9 13 13 C 1.53037 * 109.52445 * 174.16226 * 12 11 10 14 14 C 1.53111 * 109.28072 * 59.17683 * 13 12 11 15 15 C 1.50697 * 109.52766 * 182.44122 * 14 13 12 16 16 H 1.07998 * 120.00272 * 119.68254 * 15 14 13 17 17 C 1.37882 * 119.99887 * 299.68848 * 15 14 13 18 18 N 1.31514 * 119.99856 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99691 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47309 * 60.00187 * 19 17 15 21 21 H 1.48503 * 109.46768 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47582 * 299.99653 * 19 17 15 23 23 C 1.53120 * 109.16263 * 302.35100 * 14 13 12 24 24 C 1.46845 * 110.99874 * 298.81982 * 11 10 9 25 25 C 1.39717 * 109.61538 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47042 * 264.58642 * 1 2 3 27 27 H 1.08996 * 109.47605 * 24.58615 * 1 2 3 28 28 H 1.09003 * 109.47554 * 144.59067 * 1 2 3 29 29 H 1.07998 * 124.30856 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47681 * 89.99686 * 8 7 6 31 31 H 1.08994 * 109.47202 * 210.00303 * 8 7 6 32 32 H 1.09009 * 109.46850 * 329.99811 * 8 7 6 33 33 H 1.09003 * 109.46382 * 294.17886 * 12 11 10 34 34 H 1.09000 * 109.46034 * 54.14453 * 12 11 10 35 35 H 1.09005 * 109.50039 * 299.23709 * 13 12 11 36 36 H 1.08995 * 109.50697 * 179.12271 * 13 12 11 37 37 H 1.09003 * 109.51965 * 62.25424 * 14 13 12 38 38 H 0.97003 * 119.99392 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.50128 * 297.70978 * 23 14 13 40 40 H 1.09000 * 109.50412 * 177.59193 * 23 14 13 41 41 H 1.09008 * 109.46134 * 305.85793 * 24 11 10 42 42 H 1.09002 * 109.46697 * 65.82054 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1112 0.0000 4 16 3.9375 0.7703 -0.0007 5 6 3.6619 -0.9654 -0.0018 6 7 4.5173 -1.9958 -0.0023 7 6 4.0844 -3.2350 -0.0026 8 6 5.0894 -4.3579 -0.0038 9 7 2.7967 -3.5305 0.0023 10 6 1.8748 -2.5794 -0.0024 11 7 0.5303 -2.9042 -0.0023 12 6 0.1636 -3.6271 1.2221 13 6 -1.3514 -3.8412 1.2553 14 6 -1.7761 -4.6416 0.0212 15 6 -3.2743 -4.8042 0.0172 16 1 -3.8580 -4.4114 -0.8021 17 6 -3.8999 -5.4545 1.0598 18 7 -3.1890 -5.9331 2.0574 19 14 -5.7570 -5.6554 1.0553 20 1 -6.1687 -6.4250 -0.1462 21 1 -6.1789 -6.3846 2.2782 22 1 -6.3997 -4.3169 1.0300 23 6 -1.3396 -3.8905 -1.2397 24 6 0.1750 -3.6750 -1.2006 25 6 2.2886 -1.2222 -0.0010 26 1 -0.3633 -0.0970 1.0231 27 1 -0.3634 0.9344 -0.4275 28 1 -0.3634 -0.8376 -0.5954 29 1 1.7938 2.1046 -0.0004 30 1 5.3324 -4.6292 1.0235 31 1 4.6683 -5.2219 -0.5178 32 1 5.9946 -4.0348 -0.5181 33 1 0.6673 -4.5936 1.2379 34 1 0.4673 -3.0451 2.0922 35 1 -1.8556 -2.8747 1.2535 36 1 -1.6215 -4.3914 2.1566 37 1 -1.3023 -5.6231 0.0428 38 1 -3.6292 -6.3909 2.7907 39 1 -1.8436 -2.9249 -1.2809 40 1 -1.6012 -4.4760 -2.1211 41 1 0.4871 -3.1278 -2.0902 42 1 0.6788 -4.6413 -1.1735 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542822602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:42 Heat of formation + Delta-G solvation = 64.764251 kcal Electronic energy + Delta-G solvation = -24619.305541 eV Core-core repulsion = 21304.406737 eV Total energy + Delta-G solvation = -3314.898804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28301 -38.38364 -36.94065 -34.61750 -32.72481 -32.04958 -30.57870 -29.92919 -28.50596 -27.60711 -25.93594 -24.01221 -22.89532 -22.23920 -21.51976 -19.86799 -18.83589 -18.46021 -17.42514 -16.38055 -16.02713 -15.55962 -15.14489 -14.59088 -14.26910 -14.22897 -13.65845 -13.62398 -13.48736 -12.91571 -12.75054 -12.60003 -12.50674 -12.46020 -12.41946 -12.04537 -11.65324 -11.43767 -11.09505 -11.01460 -11.01296 -10.87078 -10.66376 -10.52882 -10.29546 -10.06264 -9.55906 -9.33378 -9.06070 -8.91910 -8.79905 -8.33657 -8.28503 -8.04589 -6.00760 -4.06326 0.38465 0.86932 1.06534 1.79048 2.12256 3.31039 3.36165 3.38552 3.58934 3.66731 3.96178 4.38607 4.42582 4.51122 4.73700 5.06955 5.29667 5.33750 5.44075 5.45974 5.53798 5.57753 5.69073 5.76569 5.87446 5.94730 5.96759 6.10114 6.12911 6.16290 6.23203 6.41929 6.49919 6.60669 6.74407 6.87141 6.92150 7.01310 7.31587 7.36202 7.53683 7.73155 7.97313 8.04591 8.07955 8.42553 8.96986 9.58495 11.05536 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.003720 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.793700 B = 7525.964225 C = 8422.998955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.034 4.034 3 C -0.225 4.225 4 S 0.139 5.861 5 C 0.097 3.903 6 N -0.505 5.505 7 C 0.344 3.656 8 C -0.082 4.082 9 N -0.549 5.549 10 C 0.421 3.579 11 N -0.485 5.485 12 C 0.065 3.935 13 C -0.102 4.102 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.105 4.105 24 C 0.065 3.935 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.174 0.826 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.478 10.931 -3.583 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.046 4.046 3 C -0.358 4.358 4 S 0.398 5.602 5 C -0.155 4.155 6 N -0.223 5.223 7 C 0.072 3.928 8 C -0.141 4.141 9 N -0.268 5.268 10 C 0.176 3.824 11 N -0.210 5.210 12 C -0.061 4.061 13 C -0.140 4.140 14 C 0.029 3.971 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.142 4.142 24 C -0.061 4.061 25 C -0.180 4.180 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.192 0.808 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.153 11.499 -3.411 19.325 hybrid contribution -2.286 -0.983 0.164 2.493 sum 12.867 10.516 -3.247 16.932 Atomic orbital electron populations 1.20674 0.87896 1.03296 1.03789 1.19528 0.97997 0.89169 0.97939 1.24976 0.95790 1.02528 1.12532 1.84045 1.04994 0.93064 1.78078 1.23854 0.91766 0.99823 1.00023 1.67863 1.37986 0.98640 1.17772 1.23056 0.89630 0.90570 0.89592 1.20573 0.95714 0.93803 1.03987 1.68460 1.02594 1.38267 1.17500 1.20388 0.90431 0.87082 0.84526 1.60251 1.07685 1.47190 1.05858 1.22389 1.00669 0.95289 0.87731 1.21716 0.88324 1.00162 1.03817 1.18691 0.95683 0.93711 0.88968 1.21131 0.91827 1.36080 1.05956 0.92704 1.24958 0.97949 0.95368 0.95610 1.69854 1.35136 1.38153 1.09883 0.86694 0.85997 0.78222 0.77281 1.20371 1.21390 1.20297 1.21713 0.90856 1.00955 1.00722 1.22214 0.99210 0.95414 0.89226 1.20343 0.93294 0.95024 1.09362 0.90543 0.92054 0.88621 0.80827 0.89502 0.89351 0.89676 0.93790 0.92731 0.93475 0.88388 0.95776 0.92973 0.92205 0.92498 0.92488 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.59 36.01 0.35 -0.90 16 2 C -0.03 -0.46 5.96 -103.82 -0.62 -1.08 16 3 C -0.22 -2.51 10.75 28.83 0.31 -2.20 16 4 S 0.14 1.64 23.23 -107.50 -2.50 -0.86 16 5 C 0.10 1.48 7.69 -16.09 -0.12 1.36 16 6 N -0.50 -7.92 10.36 -9.48 -0.10 -8.01 16 7 C 0.34 5.25 7.64 -157.38 -1.20 4.04 16 8 C -0.08 -0.89 10.31 36.01 0.37 -0.52 16 9 N -0.55 -9.41 9.75 -9.59 -0.09 -9.50 16 10 C 0.42 7.28 5.36 -154.57 -0.83 6.45 16 11 N -0.49 -8.58 2.54 -172.52 -0.44 -9.01 16 12 C 0.06 1.26 5.28 -3.84 -0.02 1.24 16 13 C -0.10 -2.27 5.12 -26.65 -0.14 -2.41 16 14 C 0.05 1.13 2.16 -91.65 -0.20 0.94 16 15 C -0.51 -13.45 8.56 -34.44 -0.29 -13.75 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 18 N -0.89 -24.66 11.37 55.43 0.63 -24.03 16 19 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.10 -2.06 5.32 -26.65 -0.14 -2.20 16 24 C 0.07 1.17 5.26 -3.84 -0.02 1.15 16 25 C -0.16 -2.62 6.06 -105.24 -0.64 -3.26 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.10 1.40 6.69 -51.93 -0.35 1.05 16 29 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.04 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 2.47 6.17 -51.93 -0.32 2.15 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.94 8.10 -51.92 -0.42 0.52 16 42 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -28.57 350.97 -11.63 -40.20 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.11 Total: -0.21 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.29 Total: -9.58 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.00 Total: -50.56 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.50 Total: -0.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.57 -11.63 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542822602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.961 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds