Wall clock time and date at job start Tue Mar 31 2020 11:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31889 * 122.59293 * 2 1 4 4 S 1.75351 * 111.38412 * 180.02562 * 3 2 1 5 5 C 1.75746 * 92.18635 * 0.02562 * 4 3 2 6 6 N 1.33922 * 131.28157 * 180.02562 * 5 4 3 7 7 C 1.31261 * 121.04546 * 179.97438 * 6 5 4 8 8 C 1.50699 * 118.91214 * 179.97438 * 7 6 5 9 9 N 1.32110 * 122.18279 * 359.75345 * 7 6 5 10 10 C 1.32458 * 121.18453 * 0.52193 * 9 7 6 11 11 N 1.38319 * 120.53178 * 179.75016 * 10 9 7 12 12 C 1.46842 * 111.00175 * 63.02869 * 11 10 9 13 13 C 1.53037 * 109.52445 * 174.16226 * 12 11 10 14 14 C 1.53111 * 109.28072 * 59.17683 * 13 12 11 15 15 C 1.50697 * 109.52766 * 182.44122 * 14 13 12 16 16 H 1.07998 * 120.00272 * 119.68254 * 15 14 13 17 17 C 1.37882 * 119.99887 * 299.68848 * 15 14 13 18 18 N 1.31514 * 119.99856 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99691 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47309 * 60.00187 * 19 17 15 21 21 H 1.48503 * 109.46768 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47582 * 299.99653 * 19 17 15 23 23 C 1.53120 * 109.16263 * 302.35100 * 14 13 12 24 24 C 1.46845 * 110.99874 * 298.81982 * 11 10 9 25 25 C 1.39717 * 109.61538 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47042 * 264.58642 * 1 2 3 27 27 H 1.08996 * 109.47605 * 24.58615 * 1 2 3 28 28 H 1.09003 * 109.47554 * 144.59067 * 1 2 3 29 29 H 1.07998 * 124.30856 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47681 * 89.99686 * 8 7 6 31 31 H 1.08994 * 109.47202 * 210.00303 * 8 7 6 32 32 H 1.09009 * 109.46850 * 329.99811 * 8 7 6 33 33 H 1.09003 * 109.46382 * 294.17886 * 12 11 10 34 34 H 1.09000 * 109.46034 * 54.14453 * 12 11 10 35 35 H 1.09005 * 109.50039 * 299.23709 * 13 12 11 36 36 H 1.08995 * 109.50697 * 179.12271 * 13 12 11 37 37 H 1.09003 * 109.51965 * 62.25424 * 14 13 12 38 38 H 0.97003 * 119.99392 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.50128 * 297.70978 * 23 14 13 40 40 H 1.09000 * 109.50412 * 177.59193 * 23 14 13 41 41 H 1.09008 * 109.46134 * 305.85793 * 24 11 10 42 42 H 1.09002 * 109.46697 * 65.82054 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1112 0.0000 4 16 3.9375 0.7703 -0.0007 5 6 3.6619 -0.9654 -0.0018 6 7 4.5173 -1.9958 -0.0023 7 6 4.0844 -3.2350 -0.0026 8 6 5.0894 -4.3579 -0.0038 9 7 2.7967 -3.5305 0.0023 10 6 1.8748 -2.5794 -0.0024 11 7 0.5303 -2.9042 -0.0023 12 6 0.1636 -3.6271 1.2221 13 6 -1.3514 -3.8412 1.2553 14 6 -1.7761 -4.6416 0.0212 15 6 -3.2743 -4.8042 0.0172 16 1 -3.8580 -4.4114 -0.8021 17 6 -3.8999 -5.4545 1.0598 18 7 -3.1890 -5.9331 2.0574 19 14 -5.7570 -5.6554 1.0553 20 1 -6.1687 -6.4250 -0.1462 21 1 -6.1789 -6.3846 2.2782 22 1 -6.3997 -4.3169 1.0300 23 6 -1.3396 -3.8905 -1.2397 24 6 0.1750 -3.6750 -1.2006 25 6 2.2886 -1.2222 -0.0010 26 1 -0.3633 -0.0970 1.0231 27 1 -0.3634 0.9344 -0.4275 28 1 -0.3634 -0.8376 -0.5954 29 1 1.7938 2.1046 -0.0004 30 1 5.3324 -4.6292 1.0235 31 1 4.6683 -5.2219 -0.5178 32 1 5.9946 -4.0348 -0.5181 33 1 0.6673 -4.5936 1.2379 34 1 0.4673 -3.0451 2.0922 35 1 -1.8556 -2.8747 1.2535 36 1 -1.6215 -4.3914 2.1566 37 1 -1.3023 -5.6231 0.0428 38 1 -3.6292 -6.3909 2.7907 39 1 -1.8436 -2.9249 -1.2809 40 1 -1.6012 -4.4760 -2.1211 41 1 0.4871 -3.1278 -2.0902 42 1 0.6788 -4.6413 -1.1735 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542822602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:41 Heat of formation + Delta-G solvation = 51.066834 kcal Electronic energy + Delta-G solvation = -24619.899506 eV Core-core repulsion = 21304.406737 eV Total energy + Delta-G solvation = -3315.492768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46580 -39.88092 -37.96848 -36.26027 -34.24298 -33.32747 -32.07009 -31.59408 -29.48290 -28.73927 -27.62505 -25.34431 -24.22898 -23.88587 -22.99947 -20.94719 -20.44141 -19.57725 -18.79811 -18.33252 -17.17265 -16.78544 -16.55165 -16.25767 -15.71702 -15.37565 -15.01334 -14.64499 -14.61275 -14.57613 -14.36974 -14.19201 -13.65890 -13.55538 -13.30838 -13.23973 -13.07452 -12.90351 -12.75146 -12.60260 -12.38371 -12.13560 -12.12457 -11.97529 -11.96095 -11.63844 -11.38635 -10.91636 -10.74549 -10.48728 -10.34384 -9.98294 -9.74666 -9.02258 -8.05405 -6.18280 -0.71706 -0.34430 0.05457 0.82576 1.11237 1.45690 1.45954 1.53494 2.35489 2.41810 2.47008 2.91660 3.19292 3.22549 3.46403 3.61952 3.96352 4.10058 4.14998 4.34777 4.42230 4.44515 4.58443 4.63679 4.66168 4.67152 4.69382 4.73318 4.88260 4.91459 4.97363 5.00990 5.14798 5.20838 5.24760 5.25873 5.52165 5.60591 5.62939 5.71535 5.75930 5.99204 6.12808 6.16948 6.40969 6.87908 6.92764 7.49856 8.99337 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.003720 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.793700 B = 7525.964225 C = 8422.998955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.063 4.063 3 C -0.199 4.199 4 S 0.191 5.809 5 C 0.067 3.933 6 N -0.510 5.510 7 C 0.328 3.672 8 C -0.078 4.078 9 N -0.570 5.570 10 C 0.398 3.602 11 N -0.475 5.475 12 C 0.082 3.918 13 C -0.088 4.088 14 C 0.046 3.954 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.269 1.269 23 C -0.093 4.093 24 C 0.075 3.925 25 C -0.175 4.175 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.213 0.787 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.066 0.934 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 13.451 -4.330 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 C -0.333 4.333 4 S 0.450 5.550 5 C -0.184 4.184 6 N -0.228 5.228 7 C 0.057 3.943 8 C -0.136 4.136 9 N -0.290 5.290 10 C 0.152 3.848 11 N -0.198 5.198 12 C -0.045 4.045 13 C -0.126 4.126 14 C 0.027 3.973 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.195 1.195 23 C -0.131 4.131 24 C -0.051 4.051 25 C -0.190 4.190 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.230 0.770 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 15.778 14.030 -4.172 21.522 hybrid contribution -2.373 -1.665 0.388 2.924 sum 13.405 12.365 -3.784 18.626 Atomic orbital electron populations 1.20594 0.87584 1.03838 1.03035 1.19586 0.98373 0.88931 1.00540 1.25475 0.95507 1.03491 1.08801 1.83931 1.04897 0.89647 1.76478 1.24455 0.91845 1.01728 1.00401 1.67964 1.38103 0.98934 1.17756 1.23759 0.89614 0.91639 0.89330 1.20691 0.95315 0.92603 1.05024 1.68427 1.03566 1.38816 1.18157 1.20416 0.89868 0.88055 0.86418 1.60153 1.08902 1.46091 1.04696 1.22039 0.98322 0.94806 0.89289 1.21418 0.90312 0.99101 1.01779 1.18645 0.94435 0.92697 0.91515 1.21506 0.93240 1.36021 1.05951 0.92599 1.25704 1.02141 0.95206 0.95338 1.70007 1.36676 1.38744 1.10358 0.85719 0.80992 0.78377 0.77195 1.19892 1.21362 1.19458 1.21540 0.92231 1.00553 0.98772 1.22067 0.97574 0.95186 0.90272 1.20573 0.94167 0.95123 1.09145 0.91462 0.89262 0.90852 0.77043 0.88304 0.89040 0.87899 0.95677 0.92072 0.93639 0.91552 0.99394 0.93161 0.91607 0.92034 0.90512 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.17 9.59 71.24 0.68 -1.48 16 2 C -0.06 -1.56 5.96 -18.94 -0.11 -1.67 16 3 C -0.20 -3.68 10.75 66.99 0.72 -2.96 16 4 S 0.19 3.88 23.23 -56.49 -1.31 2.57 16 5 C 0.07 1.95 7.69 84.73 0.65 2.60 16 6 N -0.51 -15.48 10.36 -183.89 -1.90 -17.38 16 7 C 0.33 9.91 7.64 138.81 1.06 10.97 16 8 C -0.08 -1.63 10.31 71.24 0.73 -0.90 16 9 N -0.57 -19.79 9.75 -184.25 -1.80 -21.58 16 10 C 0.40 13.79 5.36 133.97 0.72 14.50 16 11 N -0.47 -17.01 2.54 -699.74 -1.77 -18.79 16 12 C 0.08 3.30 5.28 86.33 0.46 3.76 16 13 C -0.09 -4.07 5.12 30.64 0.16 -3.91 16 14 C 0.05 2.24 2.16 -11.46 -0.02 2.21 16 15 C -0.53 -28.37 8.56 25.60 0.22 -28.15 16 16 H 0.06 2.92 7.74 -2.91 -0.02 2.89 16 17 C 0.01 0.79 5.31 84.66 0.45 1.24 16 18 N -0.92 -52.40 11.37 21.45 0.24 -52.16 16 19 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 C -0.09 -3.71 5.32 30.65 0.16 -3.55 16 24 C 0.08 2.72 5.26 86.33 0.45 3.17 16 25 C -0.17 -5.38 6.06 -20.26 -0.12 -5.50 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 28 H 0.07 2.07 6.69 -2.39 -0.02 2.05 16 29 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.02 1.09 8.06 -2.39 -0.02 1.08 16 34 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 35 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.07 3.51 6.17 -2.39 -0.01 3.50 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 2.48 8.10 -2.38 -0.02 2.46 16 42 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 Total: -1.00 -63.40 350.97 2.71 -60.69 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.02 Total: 11.42 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 6.21 Total: -9.66 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -5.23 Total: -109.91 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.31 Total: 2.57 kcal Total: -63.40 2.71 -60.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542822602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.757 kcal (2) G-P(sol) polarization free energy of solvation -63.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds