Wall clock time and date at job start Tue Mar 31 2020 11:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53005 * 109.47127 * 240.00318 * 2 1 3 5 5 C 1.50698 * 109.47438 * 119.99731 * 2 1 3 6 6 N 1.30860 * 125.89094 * 255.28008 * 5 2 1 7 7 C 1.33685 * 109.77540 * 180.14660 * 6 5 2 8 8 S 1.76198 * 125.62134 * 179.87727 * 7 6 5 9 9 C 1.81402 * 103.00043 * 179.71663 * 8 7 6 10 10 C 1.50700 * 109.47015 * 180.02562 * 9 8 7 11 11 C 1.38629 * 119.75032 * 90.00088 * 10 9 8 12 12 C 1.37624 * 120.24653 * 180.23096 * 11 10 9 13 13 C 1.40716 * 119.74224 * 359.52057 * 12 11 10 14 14 C 1.41396 * 120.23809 * 180.23246 * 13 12 11 15 15 H 1.08004 * 119.99614 * 155.44655 * 14 13 12 16 16 C 1.39940 * 120.00247 * 335.43838 * 14 13 12 17 17 N 1.30823 * 120.00151 * 342.11422 * 16 14 13 18 18 Si 1.86806 * 119.99767 * 162.10433 * 16 14 13 19 19 H 1.48496 * 109.46866 * 94.67188 * 18 16 14 20 20 H 1.48498 * 109.46883 * 214.66477 * 18 16 14 21 21 H 1.48493 * 109.47470 * 334.66957 * 18 16 14 22 22 C 1.40712 * 119.51327 * 0.46996 * 13 12 11 23 23 C 1.37612 * 119.74657 * 359.76314 * 22 13 12 24 24 N 1.31257 * 108.76124 * 359.61118 * 7 6 5 25 25 N 1.34349 * 125.88194 * 74.99941 * 5 2 1 26 26 H 0.96996 * 126.76401 * 359.97438 * 25 5 2 27 27 H 1.08994 * 109.47316 * 299.99554 * 1 2 3 28 28 H 1.09004 * 109.47574 * 60.00076 * 1 2 3 29 29 H 1.09009 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47034 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46919 * 300.00325 * 3 2 1 32 32 H 1.08995 * 109.47255 * 59.99974 * 3 2 1 33 33 H 1.09006 * 109.46492 * 299.99473 * 4 2 1 34 34 H 1.08998 * 109.47501 * 59.99757 * 4 2 1 35 35 H 1.08996 * 109.46645 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47253 * 59.99561 * 9 8 7 37 37 H 1.09002 * 109.46892 * 300.00095 * 9 8 7 38 38 H 1.07999 * 119.87639 * 359.94983 * 11 10 9 39 39 H 1.07997 * 120.12681 * 179.71511 * 12 11 10 40 40 H 0.97002 * 120.00064 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.12762 * 179.73183 * 22 13 12 42 42 H 1.08003 * 119.88187 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 7 2.5421 -0.1390 2.2917 7 6 2.8843 -1.0711 3.1868 8 16 3.6109 -0.7633 4.7623 9 6 3.8056 -2.4288 5.4543 10 6 4.4250 -2.3340 6.8248 11 6 3.6112 -2.2152 7.9408 12 6 4.1661 -2.1231 9.1969 13 6 5.5648 -2.1601 9.3465 14 6 6.1459 -2.0713 10.6325 15 1 7.1291 -2.4814 10.8102 16 6 5.4473 -1.4518 11.6748 17 7 4.4411 -0.6594 11.4077 18 14 5.9512 -1.7565 13.4476 19 1 6.8739 -0.6811 13.8917 20 1 4.7435 -1.7606 14.3117 21 1 6.6366 -3.0699 13.5487 22 6 6.3809 -2.2811 8.2067 23 6 5.8044 -2.3668 6.9601 24 7 2.5847 -2.2531 2.7011 25 7 2.0293 -2.0390 1.4291 26 1 1.7066 -2.7171 0.8151 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 4.4505 -3.0195 4.8037 37 1 2.8291 -2.9074 5.5295 38 1 2.5378 -2.1903 7.8237 39 1 3.5304 -2.0260 10.0645 40 1 3.9571 -0.2297 12.1302 41 1 7.4557 -2.3061 8.3097 42 1 6.4288 -2.4593 6.0837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544074676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:11 Heat of formation + Delta-G solvation = 76.736320 kcal Electronic energy + Delta-G solvation = -22481.653859 eV Core-core repulsion = 19167.274203 eV Total energy + Delta-G solvation = -3314.379656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12290 -37.67328 -37.18374 -34.05979 -32.56806 -31.34104 -30.58905 -29.35984 -27.79545 -27.56629 -27.55095 -24.07432 -23.53002 -22.43609 -21.06356 -20.06274 -19.72752 -17.90011 -17.37594 -16.23790 -15.75621 -15.50837 -15.36102 -14.45287 -14.37038 -14.29696 -14.02061 -13.94022 -13.64835 -12.82085 -12.63486 -12.61247 -12.41879 -12.21634 -12.09384 -12.00395 -11.68487 -11.59998 -11.45801 -11.28765 -11.17289 -11.08693 -10.70225 -10.60922 -10.49934 -10.24416 -9.80156 -9.75176 -9.71585 -9.46674 -9.17329 -7.54686 -7.37356 -7.27710 -6.85709 -4.42943 1.46996 1.52493 2.35398 2.76142 2.82038 2.97868 3.02546 3.04292 3.08788 3.32720 3.86709 3.90080 4.26957 4.45814 4.56401 4.71125 4.95188 5.07182 5.23578 5.28775 5.43391 5.52665 5.55948 5.60780 5.61425 5.62092 5.74617 5.82739 5.88299 6.10625 6.20842 6.26878 6.29555 6.34410 6.89628 6.96074 6.98306 7.19124 7.27265 7.53425 7.75902 7.96972 7.97444 8.01886 8.20308 8.54876 8.79360 8.87796 10.07722 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.002193 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.068635 B =12765.905612 C =12984.426254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.011 3.989 3 C -0.130 4.130 4 C -0.147 4.147 5 C 0.296 3.704 6 N -0.514 5.514 7 C 0.214 3.786 8 S -0.006 6.006 9 C -0.025 4.025 10 C -0.217 4.217 11 C -0.076 4.076 12 C -0.168 4.168 13 C 0.118 3.882 14 C -0.452 4.452 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.782 5.782 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.227 4.227 23 C -0.064 4.064 24 N -0.324 5.324 25 N -0.484 5.484 26 H 0.435 0.565 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.095 0.905 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 0.439 -19.761 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.008 3.992 3 C -0.188 4.188 4 C -0.205 4.205 5 C 0.015 3.985 6 N -0.243 5.243 7 C -0.175 4.175 8 S 0.227 5.773 9 C -0.172 4.172 10 C -0.222 4.222 11 C -0.096 4.096 12 C -0.188 4.188 13 C 0.115 3.885 14 C -0.482 4.482 15 H 0.099 0.901 16 C -0.145 4.145 17 N -0.407 5.407 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.247 4.247 23 C -0.084 4.084 24 N -0.158 5.158 25 N -0.202 5.202 26 H 0.280 0.720 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.015 1.348 -18.787 20.099 hybrid contribution -0.490 -1.650 -0.370 1.760 sum -7.505 -0.302 -19.157 20.576 Atomic orbital electron populations 1.21929 0.92280 1.02414 1.03387 1.19257 0.96143 0.96172 0.87647 1.21730 1.01936 0.92478 1.02671 1.21975 1.02044 0.99978 0.96458 1.24286 0.95539 0.82337 0.96328 1.70587 1.20756 1.32363 1.00618 1.26698 1.00307 0.88415 1.02062 1.86504 1.73166 1.16073 1.01576 1.22263 1.03562 0.93465 0.97892 1.18359 0.93482 1.19917 0.90453 1.20549 0.97102 0.99117 0.92856 1.21291 0.95347 1.06436 0.95703 1.17692 0.91808 0.86712 0.92335 1.19689 1.03025 1.31993 0.93459 0.90135 1.25980 0.93922 0.92727 1.01862 1.69828 1.16524 1.19120 1.35195 0.86279 0.79168 0.80108 0.81124 1.19441 1.19925 1.18321 1.20962 0.97848 1.13701 0.92205 1.20406 0.93202 0.98509 0.96297 1.78431 1.22505 1.21198 0.93628 1.47803 1.49711 1.07379 1.15281 0.72029 0.91509 0.90805 0.92551 0.91842 0.91854 0.90936 0.92616 0.90581 0.91724 0.90270 0.90229 0.89125 0.86244 0.90581 0.88667 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.46 37.16 0.31 -0.62 16 2 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 3 C -0.13 -1.08 8.03 37.16 0.30 -0.78 16 4 C -0.15 -0.84 8.35 37.16 0.31 -0.53 16 5 C 0.30 3.69 6.48 -155.74 -1.01 2.68 16 6 N -0.51 -8.44 10.53 -10.96 -0.12 -8.55 16 7 C 0.21 3.83 8.28 -90.96 -0.75 3.08 16 8 S -0.01 -0.11 22.15 -107.50 -2.38 -2.49 16 9 C -0.02 -0.46 5.67 36.01 0.20 -0.26 16 10 C -0.22 -4.72 5.16 -104.33 -0.54 -5.26 16 11 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 12 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 13 C 0.12 3.08 5.57 -106.83 -0.60 2.48 16 14 C -0.45 -11.67 9.05 -37.74 -0.34 -12.01 16 15 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 16 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 17 N -0.78 -19.77 10.97 55.55 0.61 -19.16 16 18 Si 0.91 18.12 29.60 -169.99 -5.03 13.09 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.23 -5.48 9.80 -38.88 -0.38 -5.86 16 23 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 24 N -0.32 -5.38 12.36 30.13 0.37 -5.00 16 25 N -0.48 -5.96 7.27 32.61 0.24 -5.72 16 26 H 0.43 3.67 8.53 -182.34 -1.55 2.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.05 0.26 7.69 -51.93 -0.40 -0.14 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 1.43 8.08 -51.92 -0.42 1.01 16 37 H 0.08 1.46 8.08 -51.92 -0.42 1.04 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -29.54 367.19 -11.93 -41.47 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.31 Total: 4.81 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.84 Total: -23.98 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 1.10 Total: -38.44 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.38 Total: -2.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.54 -11.93 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544074676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.209 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds